Wall clock time and date at job start Mon Mar 30 2020 02:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.05742 * 2 1 4 4 C 1.53877 * 110.02691 * 238.58066 * 2 1 3 5 5 C 1.54270 * 106.59630 * 240.71704 * 4 2 1 6 6 C 1.54887 * 104.19669 * 336.39017 * 5 4 2 7 7 C 1.54266 * 110.03090 * 121.42059 * 2 1 3 8 8 H 1.09002 * 110.60517 * 24.15269 * 7 2 1 9 9 C 1.53006 * 110.48366 * 261.57003 * 7 2 1 10 10 C 1.50698 * 109.47184 * 178.77463 * 9 7 2 11 11 O 1.21312 * 120.00008 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.40601 * 119.99886 * 179.97438 * 12 10 9 14 14 C 1.40647 * 126.08338 * 359.68818 * 13 12 10 15 15 N 1.30903 * 108.38780 * 179.81273 * 14 13 12 16 16 N 1.40067 * 108.40696 * 0.44677 * 15 14 13 17 17 C 1.37328 * 126.07346 * 179.69251 * 16 15 14 18 18 H 1.07997 * 119.99762 * 180.02562 * 17 16 15 19 19 C 1.38988 * 119.99491 * 0.02562 * 17 16 15 20 20 N 1.31288 * 120.00426 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99544 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47346 * 60.00138 * 21 19 17 23 23 H 1.48498 * 109.46890 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47474 * 299.99906 * 21 19 17 25 25 C 1.35681 * 126.08106 * 179.97438 * 13 12 10 26 26 H 1.09005 * 109.46789 * 298.58430 * 1 2 3 27 27 H 1.08993 * 109.47056 * 58.58070 * 1 2 3 28 28 H 1.08995 * 109.47659 * 178.58581 * 1 2 3 29 29 H 1.08994 * 110.03168 * 121.43710 * 4 2 1 30 30 H 1.08999 * 110.03623 * 359.97438 * 4 2 1 31 31 H 1.09004 * 110.48405 * 217.71591 * 5 4 2 32 32 H 1.08998 * 110.59960 * 95.13127 * 5 4 2 33 33 H 1.08999 * 110.75854 * 279.62573 * 6 5 4 34 34 H 1.09005 * 110.91005 * 156.33205 * 6 5 4 35 35 H 1.09001 * 109.47002 * 298.76867 * 9 7 2 36 36 H 1.08993 * 109.46955 * 58.77304 * 9 7 2 37 37 H 0.96998 * 119.99962 * 359.97438 * 12 10 9 38 38 H 1.07999 * 125.80140 * 359.96488 * 14 13 12 39 39 H 0.96998 * 120.00177 * 179.97438 * 20 19 17 40 40 H 1.08007 * 126.24292 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0570 -0.7537 -1.2337 5 6 2.8873 -1.9408 -0.7035 6 6 3.3136 -1.5008 0.7191 7 6 2.0584 -0.7556 1.2368 8 1 1.3152 -1.4659 1.5989 9 6 2.4392 0.2296 2.3438 10 6 2.9233 -0.5328 3.5502 11 8 2.9597 -1.7452 3.5270 12 7 3.3149 0.1322 4.6551 13 6 3.7660 -0.5793 5.7808 14 6 3.8553 -1.9782 5.8956 15 7 4.3211 -2.2661 7.0846 16 7 4.5370 -1.0679 7.7771 17 6 5.0154 -0.9496 9.0589 18 1 5.1442 0.0281 9.4991 19 6 5.3338 -2.0883 9.7895 20 7 5.1768 -3.2769 9.2545 21 14 5.9852 -1.9275 11.5329 22 1 4.9798 -1.2306 12.3747 23 1 6.2457 -3.2789 12.0905 24 1 7.2474 -1.1452 11.5196 25 6 4.1876 -0.0385 6.9517 26 1 -0.3633 0.4917 0.9025 27 1 -0.3633 0.5357 -0.8769 28 1 -0.3634 -1.0273 -0.0254 29 1 2.6866 -0.0956 -1.8325 30 1 1.2228 -1.1198 -1.8322 31 1 3.7636 -2.1039 -1.3310 32 1 2.2789 -2.8440 -0.6573 33 1 4.1710 -0.8293 0.6751 34 1 3.5343 -2.3662 1.3441 35 1 3.2320 0.8876 1.9877 36 1 1.5677 0.8250 2.6159 37 1 3.2854 1.1015 4.6738 38 1 3.5877 -2.6931 5.1316 39 1 5.3993 -4.0715 9.7643 40 1 4.2370 1.0143 7.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769371889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:19 Heat of formation + Delta-G solvation = 21.006623 kcal Electronic energy + Delta-G solvation = -21097.006593 eV Core-core repulsion = 17912.591918 eV Total energy + Delta-G solvation = -3184.414675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98792 -39.12433 -37.81291 -34.12374 -33.10296 -31.55135 -31.21149 -30.15295 -27.87530 -26.20578 -24.95064 -24.12281 -21.09417 -20.71222 -19.93260 -19.48555 -19.28969 -17.41877 -16.38151 -15.51496 -15.41229 -15.17475 -15.02844 -14.63421 -13.98292 -13.74454 -13.48171 -13.19894 -13.07585 -12.84891 -12.73246 -12.26660 -11.81517 -11.65747 -11.37103 -11.21818 -10.97744 -10.93251 -10.87547 -10.75059 -10.56221 -10.53232 -10.45712 -10.41645 -10.04818 -9.11473 -9.01126 -8.75192 -8.01509 -6.63998 -6.52283 -4.19073 2.91037 3.06327 3.10299 3.10393 3.68352 3.72883 3.92623 4.47525 4.52825 4.60735 4.66746 4.85160 5.05298 5.18734 5.22586 5.29745 5.34189 5.40612 5.49851 5.56152 5.68386 5.71101 5.80043 5.87246 5.95802 6.03103 6.12277 6.14263 6.28458 6.34035 6.45689 6.52312 6.57695 6.95516 7.01809 7.19647 7.30595 7.89859 8.25711 8.35977 8.69132 8.96729 9.42235 9.71838 10.43797 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051025 B = 0.003132 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.618265 B = 8938.665589 C = 9222.922528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.069 4.069 8 H 0.083 0.917 9 C -0.129 4.129 10 C 0.497 3.503 11 O -0.534 6.534 12 N -0.629 5.629 13 C -0.058 4.058 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.324 4.324 18 H 0.115 0.885 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.086 4.086 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.176 0.824 39 H 0.275 0.725 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 8.413 -14.838 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.163 4.163 6 C -0.155 4.155 7 C -0.088 4.088 8 H 0.101 0.899 9 C -0.170 4.170 10 C 0.283 3.717 11 O -0.411 6.411 12 N -0.272 5.272 13 C -0.164 4.164 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.088 4.912 17 C -0.457 4.457 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.398 5.398 21 Si 0.758 3.242 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.237 4.237 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.045 6.350 -14.008 16.187 hybrid contribution 0.038 1.467 0.270 1.492 sum -5.007 7.817 -13.738 16.580 Atomic orbital electron populations 1.21887 0.95183 1.01800 1.01316 1.21824 0.95521 0.99318 0.94658 0.91122 1.22211 0.99257 0.97176 0.97065 1.22355 0.99240 0.97857 0.96881 1.22561 0.96667 1.00974 0.95302 1.21789 0.98241 0.96133 0.92634 0.89852 1.21691 1.02161 0.99014 0.94086 1.20456 0.78970 0.88459 0.83772 1.90571 1.54330 1.13985 1.82223 1.42606 1.63270 1.08807 1.12504 1.17312 1.18202 0.91910 0.88938 1.24107 1.06343 0.93353 0.97186 1.78238 1.22972 1.03817 1.04200 1.44527 1.35017 1.02548 1.09103 1.19807 1.44070 0.95411 0.86365 0.86747 1.25627 0.96263 0.94587 1.00598 1.70206 1.35473 0.97776 1.36322 0.85908 0.79561 0.78279 0.80457 1.19197 1.20152 1.19192 1.21267 1.16112 0.93782 0.92534 0.92708 0.93036 0.92587 0.92206 0.92037 0.92121 0.91805 0.92167 0.89950 0.89452 0.89513 0.77206 0.80734 0.91460 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.84 37.16 0.33 -0.90 16 2 C -0.09 -0.88 3.07 -89.50 -0.27 -1.15 16 3 H 0.07 0.60 7.84 -51.93 -0.41 0.19 16 4 C -0.12 -1.07 6.46 -25.61 -0.17 -1.24 16 5 C -0.13 -1.30 6.83 -25.07 -0.17 -1.47 16 6 C -0.12 -1.48 5.63 -24.74 -0.14 -1.62 16 7 C -0.07 -0.81 2.00 -88.96 -0.18 -0.99 16 8 H 0.08 1.13 7.73 -51.93 -0.40 0.72 16 9 C -0.13 -1.51 5.06 -27.88 -0.14 -1.65 16 10 C 0.50 8.49 7.58 -10.99 -0.08 8.41 16 11 O -0.53 -11.15 11.65 5.53 0.06 -11.08 16 12 N -0.63 -11.20 5.47 -10.00 -0.05 -11.26 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.92 10.85 -17.04 -0.18 -1.11 16 15 N -0.26 -7.73 10.40 30.80 0.32 -7.41 16 16 N -0.14 -4.02 3.74 -11.41 -0.04 -4.06 16 17 C -0.32 -8.71 10.25 -14.81 -0.15 -8.86 16 18 H 0.11 2.73 7.83 -52.49 -0.41 2.32 16 19 C 0.05 1.21 5.50 -17.51 -0.10 1.11 16 20 N -0.77 -21.86 11.81 55.49 0.66 -21.20 16 21 Si 0.93 19.14 29.55 -169.99 -5.02 14.11 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 25 C -0.09 -2.06 11.49 -16.39 -0.19 -2.25 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 34 H 0.08 1.26 7.05 -51.93 -0.37 0.90 16 35 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.40 5.40 8.83 -40.82 -0.36 5.04 16 38 H 0.18 4.64 5.92 -52.49 -0.31 4.32 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -32.88 326.76 -7.19 -40.07 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -6.01 Total: 9.57 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -2.03 Total: -13.66 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.88 Total: -43.93 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.06 Total: -11.08 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.88 -7.19 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769371889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.074 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds