Wall clock time and date at job start Mon Mar 30 2020 02:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 110.05742 * 2 1 4 4 C 1.53877 * 110.02691 * 238.58066 * 2 1 3 5 5 C 1.54270 * 106.59630 * 240.71704 * 4 2 1 6 6 C 1.54887 * 104.19669 * 336.39017 * 5 4 2 7 7 C 1.54266 * 110.03090 * 121.42059 * 2 1 3 8 8 H 1.09002 * 110.60517 * 24.15269 * 7 2 1 9 9 C 1.53006 * 110.48366 * 261.57003 * 7 2 1 10 10 C 1.50698 * 109.47184 * 178.77463 * 9 7 2 11 11 O 1.21312 * 120.00008 * 359.97438 * 10 9 7 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.40601 * 119.99886 * 179.97438 * 12 10 9 14 14 C 1.40647 * 126.08338 * 359.68818 * 13 12 10 15 15 N 1.30903 * 108.38780 * 179.81273 * 14 13 12 16 16 N 1.40067 * 108.40696 * 0.44677 * 15 14 13 17 17 C 1.37328 * 126.07346 * 179.69251 * 16 15 14 18 18 H 1.07997 * 119.99762 * 180.02562 * 17 16 15 19 19 C 1.38988 * 119.99491 * 0.02562 * 17 16 15 20 20 N 1.31288 * 120.00426 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99544 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47346 * 60.00138 * 21 19 17 23 23 H 1.48498 * 109.46890 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47474 * 299.99906 * 21 19 17 25 25 C 1.35681 * 126.08106 * 179.97438 * 13 12 10 26 26 H 1.09005 * 109.46789 * 298.58430 * 1 2 3 27 27 H 1.08993 * 109.47056 * 58.58070 * 1 2 3 28 28 H 1.08995 * 109.47659 * 178.58581 * 1 2 3 29 29 H 1.08994 * 110.03168 * 121.43710 * 4 2 1 30 30 H 1.08999 * 110.03623 * 359.97438 * 4 2 1 31 31 H 1.09004 * 110.48405 * 217.71591 * 5 4 2 32 32 H 1.08998 * 110.59960 * 95.13127 * 5 4 2 33 33 H 1.08999 * 110.75854 * 279.62573 * 6 5 4 34 34 H 1.09005 * 110.91005 * 156.33205 * 6 5 4 35 35 H 1.09001 * 109.47002 * 298.76867 * 9 7 2 36 36 H 1.08993 * 109.46955 * 58.77304 * 9 7 2 37 37 H 0.96998 * 119.99962 * 359.97438 * 12 10 9 38 38 H 1.07999 * 125.80140 * 359.96488 * 14 13 12 39 39 H 0.96998 * 120.00177 * 179.97438 * 20 19 17 40 40 H 1.08007 * 126.24292 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0570 -0.7537 -1.2337 5 6 2.8873 -1.9408 -0.7035 6 6 3.3136 -1.5008 0.7191 7 6 2.0584 -0.7556 1.2368 8 1 1.3152 -1.4659 1.5989 9 6 2.4392 0.2296 2.3438 10 6 2.9233 -0.5328 3.5502 11 8 2.9597 -1.7452 3.5270 12 7 3.3149 0.1322 4.6551 13 6 3.7660 -0.5793 5.7808 14 6 3.8553 -1.9782 5.8956 15 7 4.3211 -2.2661 7.0846 16 7 4.5370 -1.0679 7.7771 17 6 5.0154 -0.9496 9.0589 18 1 5.1442 0.0281 9.4991 19 6 5.3338 -2.0883 9.7895 20 7 5.1768 -3.2769 9.2545 21 14 5.9852 -1.9275 11.5329 22 1 4.9798 -1.2306 12.3747 23 1 6.2457 -3.2789 12.0905 24 1 7.2474 -1.1452 11.5196 25 6 4.1876 -0.0385 6.9517 26 1 -0.3633 0.4917 0.9025 27 1 -0.3633 0.5357 -0.8769 28 1 -0.3634 -1.0273 -0.0254 29 1 2.6866 -0.0956 -1.8325 30 1 1.2228 -1.1198 -1.8322 31 1 3.7636 -2.1039 -1.3310 32 1 2.2789 -2.8440 -0.6573 33 1 4.1710 -0.8293 0.6751 34 1 3.5343 -2.3662 1.3441 35 1 3.2320 0.8876 1.9877 36 1 1.5677 0.8250 2.6159 37 1 3.2854 1.1015 4.6738 38 1 3.5877 -2.6931 5.1316 39 1 5.3993 -4.0715 9.7643 40 1 4.2370 1.0143 7.1876 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769371889.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:18 Heat of formation + Delta-G solvation = 0.114778 kcal Electronic energy + Delta-G solvation = -21097.912532 eV Core-core repulsion = 17912.591918 eV Total energy + Delta-G solvation = -3185.320613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.69564 -40.54888 -38.98638 -35.86086 -34.91235 -32.67190 -32.10275 -31.97804 -29.64257 -27.39745 -26.52232 -25.20337 -22.86038 -22.09290 -21.26708 -21.00976 -20.29510 -19.23718 -17.77590 -17.35617 -16.88972 -16.40184 -16.21908 -15.75136 -15.57790 -15.20181 -14.81831 -14.62257 -14.48912 -14.06222 -13.64902 -13.46727 -13.27817 -13.11659 -12.87295 -12.85071 -12.67269 -12.14143 -11.89175 -11.75128 -11.71765 -11.54769 -11.43166 -11.35613 -11.16155 -10.96470 -10.81207 -10.46518 -10.08838 -8.48696 -8.46179 -6.23294 1.25980 1.39419 1.56079 1.59837 1.91039 2.08857 2.39219 2.57192 2.95847 3.09639 3.67616 3.75843 3.84345 4.12216 4.37416 4.44210 4.48292 4.49195 4.59981 4.62959 4.72598 4.76618 4.82228 4.86696 4.99953 5.01101 5.09405 5.13478 5.16984 5.25748 5.31122 5.35109 5.39278 5.43245 5.56340 5.59163 5.68159 5.97164 6.35064 6.75662 6.86510 7.46599 7.53984 7.71397 8.53227 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051025 B = 0.003132 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.618265 B = 8938.665589 C = 9222.922528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.070 4.070 8 H 0.057 0.943 9 C -0.116 4.116 10 C 0.492 3.508 11 O -0.576 6.576 12 N -0.623 5.623 13 C -0.042 4.042 14 C -0.063 4.063 15 N -0.312 5.312 16 N -0.170 5.170 17 C -0.356 4.356 18 H 0.141 0.859 19 C -0.008 4.008 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.253 1.253 23 H -0.278 1.278 24 H -0.253 1.253 25 C -0.084 4.084 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.419 0.581 38 H 0.166 0.834 39 H 0.276 0.724 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 11.885 -15.507 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.153 4.153 5 C -0.163 4.163 6 C -0.159 4.159 7 C -0.089 4.089 8 H 0.076 0.924 9 C -0.155 4.155 10 C 0.281 3.719 11 O -0.455 6.455 12 N -0.268 5.268 13 C -0.149 4.149 14 C -0.238 4.238 15 N -0.144 5.144 16 N 0.061 4.939 17 C -0.487 4.487 18 H 0.158 0.842 19 C -0.219 4.219 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.177 1.177 23 H -0.203 1.203 24 H -0.177 1.177 25 C -0.234 4.234 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.256 0.744 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -5.368 9.883 -14.720 18.525 hybrid contribution 0.084 0.396 0.329 0.521 sum -5.284 10.278 -14.391 18.457 Atomic orbital electron populations 1.21889 0.94560 1.01486 1.02243 1.21787 0.95974 0.99803 0.92935 0.89097 1.22213 0.99450 0.96514 0.97159 1.22345 0.99780 0.98424 0.95705 1.22527 0.97510 0.99758 0.96126 1.21781 0.97155 0.96062 0.93945 0.92399 1.21745 1.04121 0.98692 0.90975 1.21601 0.77358 0.88334 0.84631 1.90576 1.55565 1.16431 1.82959 1.42618 1.63183 1.09899 1.11111 1.17408 1.16137 0.90849 0.90462 1.24147 1.07590 0.95299 0.96749 1.78129 1.24723 1.06024 1.05552 1.44832 1.36282 1.02801 1.10005 1.20583 1.44583 0.96991 0.86541 0.84187 1.26898 0.95751 0.93728 1.05526 1.70400 1.37525 0.98927 1.38626 0.84645 0.79367 0.78271 0.73856 1.17684 1.20343 1.17676 1.22021 1.14406 0.95117 0.91887 0.92437 0.91416 0.93647 0.90700 0.91222 0.91361 0.92700 0.91658 0.93998 0.86370 0.86390 0.74380 0.81754 0.91457 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.84 71.98 0.64 -1.41 16 2 C -0.09 -1.33 3.07 -10.07 -0.03 -1.36 16 3 H 0.09 1.09 7.84 -2.39 -0.02 1.08 16 4 C -0.12 -1.77 6.46 31.32 0.20 -1.57 16 5 C -0.12 -2.50 6.83 31.67 0.22 -2.28 16 6 C -0.12 -3.05 5.63 31.88 0.18 -2.87 16 7 C -0.07 -1.56 2.00 -9.72 -0.02 -1.58 16 8 H 0.06 1.58 7.73 -2.39 -0.02 1.56 16 9 C -0.12 -2.37 5.06 29.85 0.15 -2.22 16 10 C 0.49 16.38 7.58 87.66 0.66 17.05 16 11 O -0.58 -24.94 11.65 -3.13 -0.04 -24.98 16 12 N -0.62 -21.12 5.47 -303.92 -1.66 -22.79 16 13 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 14 C -0.06 -3.51 10.85 85.42 0.93 -2.59 16 15 N -0.31 -19.32 10.40 -56.47 -0.59 -19.91 16 16 N -0.17 -9.64 3.74 -190.01 -0.71 -10.35 16 17 C -0.36 -19.19 10.25 84.01 0.86 -18.33 16 18 H 0.14 6.50 7.83 -2.91 -0.02 6.48 16 19 C -0.01 -0.41 5.50 84.95 0.47 0.06 16 20 N -0.83 -48.75 11.81 21.66 0.26 -48.49 16 21 Si 1.02 39.14 29.55 68.60 2.03 41.17 16 22 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 23 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 24 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 25 C -0.08 -3.96 11.49 83.38 0.96 -3.00 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.53 8.02 -2.39 -0.02 1.51 16 34 H 0.04 1.37 7.05 -2.38 -0.02 1.36 16 35 H 0.12 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.42 10.05 8.83 -92.71 -0.82 9.23 16 38 H 0.17 9.36 5.92 -2.91 -0.02 9.35 16 39 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -77.06 326.76 4.98 -72.08 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.22 Total: 35.08 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 5.47 Total: -21.82 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.70 Total: -101.53 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.04 Total: -24.98 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -77.06 4.98 -72.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769371889.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.191 kcal (2) G-P(sol) polarization free energy of solvation -77.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds