Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.01763 * 2 1 4 4 C 1.54266 * 110.03403 * 121.39532 * 2 1 3 5 5 C 1.54884 * 104.19779 * 142.89238 * 4 2 1 6 6 C 1.54898 * 102.74787 * 322.05858 * 5 4 2 7 7 C 1.53879 * 110.02976 * 238.56098 * 2 1 3 8 8 H 1.08996 * 110.03239 * 121.42907 * 7 2 1 9 9 C 1.53000 * 110.03209 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47163 * 174.99883 * 9 7 2 11 11 O 1.21301 * 119.99651 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00175 * 179.97438 * 10 9 7 13 13 C 1.40596 * 119.99885 * 179.97438 * 12 10 9 14 14 C 1.40642 * 126.08225 * 0.02874 * 13 12 10 15 15 N 1.30907 * 108.38947 * 179.97438 * 14 13 12 16 16 N 1.40077 * 108.40400 * 0.02562 * 15 14 13 17 17 C 1.37322 * 126.07125 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00086 * 180.02562 * 17 16 15 19 19 C 1.38988 * 119.99786 * 0.02562 * 17 16 15 20 20 N 1.31298 * 120.00293 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47314 * 120.00036 * 21 19 17 24 24 H 1.48494 * 109.47036 * 240.00085 * 21 19 17 25 25 C 1.35673 * 126.08009 * 179.71389 * 13 12 10 26 26 H 1.09001 * 109.47002 * 300.05728 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.06165 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08996 * 110.48715 * 261.57205 * 4 2 1 30 30 H 1.09008 * 110.48618 * 24.21420 * 4 2 1 31 31 H 1.08996 * 110.75676 * 80.36866 * 5 4 2 32 32 H 1.08998 * 110.75814 * 203.74249 * 5 4 2 33 33 H 1.09006 * 110.48573 * 156.61986 * 6 5 4 34 34 H 1.08997 * 110.48422 * 279.12669 * 6 5 4 35 35 H 1.08999 * 109.47257 * 294.99956 * 9 7 2 36 36 H 1.08999 * 109.47005 * 55.00116 * 9 7 2 37 37 H 0.97003 * 119.99955 * 0.02562 * 12 10 9 38 38 H 1.08002 * 125.81031 * 359.95767 * 14 13 12 39 39 H 0.96994 * 120.00238 * 179.97438 * 20 19 17 40 40 H 1.08009 * 126.24871 * 0.02849 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7550 1.2371 5 6 3.3137 -1.5005 0.7197 6 6 2.8874 -1.9410 -0.7028 7 6 2.0571 -0.7541 -1.2335 8 1 2.6867 -0.0961 -1.8325 9 6 0.8861 -1.2682 -2.0733 10 6 1.4126 -1.8963 -3.3381 11 8 2.6070 -1.9297 -3.5469 12 7 0.5564 -2.4216 -4.2366 13 6 1.0476 -3.0070 -5.4168 14 6 2.4000 -3.1140 -5.7876 15 7 2.4637 -3.7170 -6.9477 16 7 1.1597 -4.0172 -7.3623 17 6 0.8077 -4.6498 -8.5292 18 1 -0.2332 -4.8323 -8.7517 19 6 1.7911 -5.0551 -9.4239 20 7 3.0566 -4.8337 -9.1531 21 14 1.3123 -5.9149 -11.0116 22 1 -0.1657 -6.0428 -11.0790 23 1 1.7931 -5.1195 -12.1698 24 1 1.9287 -7.2654 -11.0485 25 6 0.3016 -3.5745 -6.3976 26 1 -0.3633 0.5147 0.8895 27 1 -0.3633 0.5128 -0.8905 28 1 -0.3633 -1.0277 0.0005 29 1 2.3298 -0.0529 2.0254 30 1 1.3143 -1.4654 1.5972 31 1 4.1710 -0.8289 0.6754 32 1 3.5326 -2.3674 1.3431 33 1 3.7637 -2.1043 -1.3303 34 1 2.2791 -2.8442 -0.6562 35 1 0.3289 -2.0116 -1.5032 36 1 0.2283 -0.4369 -2.3270 37 1 -0.3988 -2.3952 -4.0694 38 1 3.2428 -2.7588 -5.2131 39 1 3.7429 -5.1169 -9.7773 40 1 -0.7752 -3.6580 -6.4138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769371891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = 26.495554 kcal Electronic energy + Delta-G solvation = -21205.068462 eV Core-core repulsion = 18020.891804 eV Total energy + Delta-G solvation = -3184.176657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.05577 -39.22803 -37.81953 -34.11891 -33.10511 -31.89023 -30.86577 -30.13638 -27.86846 -25.94112 -25.02216 -24.45774 -21.09930 -20.81213 -20.32910 -19.33127 -18.43795 -17.51530 -16.77596 -15.61699 -15.38969 -15.24279 -14.97695 -14.61418 -13.98740 -13.79821 -13.46774 -13.39871 -13.01440 -12.82741 -12.42977 -12.31919 -11.90556 -11.65352 -11.36677 -11.25204 -10.96362 -10.89466 -10.81950 -10.73491 -10.66141 -10.50532 -10.48653 -10.25326 -10.06258 -9.12265 -9.00495 -8.75027 -8.01298 -6.63666 -6.52492 -4.18981 2.90215 3.06705 3.10129 3.12603 3.69396 3.73172 3.93201 4.47144 4.52570 4.56983 4.65929 4.84070 5.05287 5.16651 5.24513 5.28496 5.32860 5.39036 5.45880 5.57739 5.64438 5.74242 5.78783 5.87726 5.90932 5.99041 6.12144 6.15928 6.28581 6.34059 6.44022 6.52798 6.54769 6.96149 7.02242 7.19862 7.30814 7.90338 8.26125 8.36416 8.69349 8.97495 9.42501 9.71981 10.43706 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.003208 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.208011 B = 8726.540316 C = 9105.282873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.113 4.113 7 C -0.070 4.070 8 H 0.080 0.920 9 C -0.131 4.131 10 C 0.495 3.505 11 O -0.535 6.535 12 N -0.630 5.630 13 C -0.058 4.058 14 C -0.035 4.035 15 N -0.261 5.261 16 N -0.145 5.145 17 C -0.323 4.323 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.086 4.086 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.395 0.605 38 H 0.176 0.824 39 H 0.274 0.726 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 6.723 15.657 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.165 4.165 6 C -0.150 4.150 7 C -0.089 4.089 8 H 0.098 0.902 9 C -0.171 4.171 10 C 0.281 3.719 11 O -0.412 6.412 12 N -0.272 5.272 13 C -0.163 4.163 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.087 4.913 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.398 5.398 21 Si 0.758 3.242 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.237 4.237 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.084 0.916 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.382 6.235 14.485 16.367 hybrid contribution -1.434 -0.068 -0.004 1.436 sum -5.816 6.167 14.481 16.780 Atomic orbital electron populations 1.22018 0.95337 1.01902 1.01375 1.21812 0.95572 0.99263 0.94662 0.91148 1.22443 0.97542 0.98796 0.96906 1.22522 0.97488 0.99647 0.96890 1.22377 1.00389 0.97097 0.95144 1.21520 0.95344 0.97226 0.94794 0.90181 1.21915 0.99642 1.01240 0.94332 1.20562 0.86850 0.79622 0.84853 1.90572 1.15699 1.57755 1.77167 1.42608 1.08977 1.57080 1.18555 1.17314 0.93419 1.14460 0.91140 1.24107 0.95377 1.05169 0.96353 1.78241 0.97941 1.20912 1.12118 1.44543 1.03190 1.31952 1.11590 1.19897 0.94820 1.36862 0.93985 0.86661 1.25637 0.94752 0.96805 0.99928 1.70229 0.99633 1.35659 1.34237 0.85774 0.79320 0.78937 0.80156 1.18729 1.19947 1.19941 1.21267 0.95474 1.13126 0.93801 0.93166 0.92339 0.92232 0.92166 0.91703 0.91711 0.91934 0.90596 0.92113 0.89274 0.89155 0.77228 0.80746 0.91578 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.87 37.16 0.29 -0.87 16 2 C -0.09 -0.87 3.50 -89.50 -0.31 -1.18 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.04 6.36 -25.07 -0.16 -1.20 16 5 C -0.13 -1.28 6.91 -24.74 -0.17 -1.45 16 6 C -0.11 -1.41 5.42 -25.07 -0.14 -1.54 16 7 C -0.07 -0.82 2.55 -89.50 -0.23 -1.05 16 8 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 9 C -0.13 -1.53 3.88 -27.88 -0.11 -1.64 16 10 C 0.49 8.48 7.58 -10.98 -0.08 8.40 16 11 O -0.53 -11.24 11.98 5.54 0.07 -11.18 16 12 N -0.63 -11.23 5.47 -10.00 -0.05 -11.29 16 13 C -0.06 -1.35 6.90 -83.85 -0.58 -1.93 16 14 C -0.03 -0.93 10.85 -17.04 -0.18 -1.11 16 15 N -0.26 -7.73 10.40 30.80 0.32 -7.41 16 16 N -0.14 -4.05 3.74 -11.41 -0.04 -4.09 16 17 C -0.32 -8.69 10.25 -14.81 -0.15 -8.85 16 18 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 19 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.86 11.81 55.50 0.66 -21.21 16 21 Si 0.93 19.17 29.55 -169.99 -5.02 14.14 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.09 -2.06 11.49 -16.40 -0.19 -2.25 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.44 6.70 -51.93 -0.35 0.09 16 28 H 0.06 0.45 6.79 -51.93 -0.35 0.10 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.54 7.85 -51.92 -0.41 0.14 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.13 7.66 -51.93 -0.40 0.73 16 34 H 0.06 0.77 7.76 -51.93 -0.40 0.37 16 35 H 0.09 0.89 6.87 -51.93 -0.36 0.54 16 36 H 0.09 0.89 6.46 -51.93 -0.34 0.55 16 37 H 0.40 5.41 8.83 -40.82 -0.36 5.05 16 38 H 0.18 4.65 5.92 -52.49 -0.31 4.34 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.14 2.87 8.06 -52.48 -0.42 2.45 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -33.06 321.00 -7.11 -40.17 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.77 Total: 9.61 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.11 Total: -13.59 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.88 Total: -44.00 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.07 Total: -11.18 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.06 -7.11 -40.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769371891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.666 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds