Wall clock time and date at job start Mon Mar 30 2020 02:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.01763 * 2 1 4 4 C 1.54266 * 110.03403 * 121.39532 * 2 1 3 5 5 C 1.54884 * 104.19779 * 142.89238 * 4 2 1 6 6 C 1.54898 * 102.74787 * 322.05858 * 5 4 2 7 7 C 1.53879 * 110.02976 * 238.56098 * 2 1 3 8 8 H 1.08996 * 110.03239 * 121.42907 * 7 2 1 9 9 C 1.53000 * 110.03209 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47163 * 174.99883 * 9 7 2 11 11 O 1.21301 * 119.99651 * 0.02562 * 10 9 7 12 12 N 1.34776 * 120.00175 * 179.97438 * 10 9 7 13 13 C 1.40596 * 119.99885 * 179.97438 * 12 10 9 14 14 C 1.40642 * 126.08225 * 0.02874 * 13 12 10 15 15 N 1.30907 * 108.38947 * 179.97438 * 14 13 12 16 16 N 1.40077 * 108.40400 * 0.02562 * 15 14 13 17 17 C 1.37322 * 126.07125 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00086 * 180.02562 * 17 16 15 19 19 C 1.38988 * 119.99786 * 0.02562 * 17 16 15 20 20 N 1.31298 * 120.00293 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47157 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47314 * 120.00036 * 21 19 17 24 24 H 1.48494 * 109.47036 * 240.00085 * 21 19 17 25 25 C 1.35673 * 126.08009 * 179.71389 * 13 12 10 26 26 H 1.09001 * 109.47002 * 300.05728 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.06165 * 1 2 3 28 28 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 29 29 H 1.08996 * 110.48715 * 261.57205 * 4 2 1 30 30 H 1.09008 * 110.48618 * 24.21420 * 4 2 1 31 31 H 1.08996 * 110.75676 * 80.36866 * 5 4 2 32 32 H 1.08998 * 110.75814 * 203.74249 * 5 4 2 33 33 H 1.09006 * 110.48573 * 156.61986 * 6 5 4 34 34 H 1.08997 * 110.48422 * 279.12669 * 6 5 4 35 35 H 1.08999 * 109.47257 * 294.99956 * 9 7 2 36 36 H 1.08999 * 109.47005 * 55.00116 * 9 7 2 37 37 H 0.97003 * 119.99955 * 0.02562 * 12 10 9 38 38 H 1.08002 * 125.81031 * 359.95767 * 14 13 12 39 39 H 0.96994 * 120.00238 * 179.97438 * 20 19 17 40 40 H 1.08009 * 126.24871 * 0.02849 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0585 -0.7550 1.2371 5 6 3.3137 -1.5005 0.7197 6 6 2.8874 -1.9410 -0.7028 7 6 2.0571 -0.7541 -1.2335 8 1 2.6867 -0.0961 -1.8325 9 6 0.8861 -1.2682 -2.0733 10 6 1.4126 -1.8963 -3.3381 11 8 2.6070 -1.9297 -3.5469 12 7 0.5564 -2.4216 -4.2366 13 6 1.0476 -3.0070 -5.4168 14 6 2.4000 -3.1140 -5.7876 15 7 2.4637 -3.7170 -6.9477 16 7 1.1597 -4.0172 -7.3623 17 6 0.8077 -4.6498 -8.5292 18 1 -0.2332 -4.8323 -8.7517 19 6 1.7911 -5.0551 -9.4239 20 7 3.0566 -4.8337 -9.1531 21 14 1.3123 -5.9149 -11.0116 22 1 -0.1657 -6.0428 -11.0790 23 1 1.7931 -5.1195 -12.1698 24 1 1.9287 -7.2654 -11.0485 25 6 0.3016 -3.5745 -6.3976 26 1 -0.3633 0.5147 0.8895 27 1 -0.3633 0.5128 -0.8905 28 1 -0.3633 -1.0277 0.0005 29 1 2.3298 -0.0529 2.0254 30 1 1.3143 -1.4654 1.5972 31 1 4.1710 -0.8289 0.6754 32 1 3.5326 -2.3674 1.3431 33 1 3.7637 -2.1043 -1.3303 34 1 2.2791 -2.8442 -0.6562 35 1 0.3289 -2.0116 -1.5032 36 1 0.2283 -0.4369 -2.3270 37 1 -0.3988 -2.3952 -4.0694 38 1 3.2428 -2.7588 -5.2131 39 1 3.7429 -5.1169 -9.7773 40 1 -0.7752 -3.6580 -6.4138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769371891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:21 Heat of formation + Delta-G solvation = 5.256331 kcal Electronic energy + Delta-G solvation = -21205.989463 eV Core-core repulsion = 18020.891804 eV Total energy + Delta-G solvation = -3185.097659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.71431 -40.65987 -39.04780 -35.86301 -34.91654 -32.84795 -32.20794 -31.65164 -29.64010 -27.29774 -26.26894 -25.64025 -22.87877 -22.12048 -21.53258 -21.13721 -19.35685 -19.30229 -18.06456 -17.41102 -16.84286 -16.68920 -16.18810 -15.76611 -15.51524 -15.18444 -14.82270 -14.74429 -14.42579 -14.20233 -13.51216 -13.34634 -13.22277 -13.13526 -12.93241 -12.83488 -12.75459 -12.03047 -11.86066 -11.74725 -11.61673 -11.53568 -11.45319 -11.35995 -11.08924 -10.98681 -10.81631 -10.48186 -10.09124 -8.48815 -8.46560 -6.23422 1.24063 1.39684 1.58602 1.58922 1.90635 2.08109 2.39541 2.56903 2.96059 3.09446 3.67764 3.73807 3.82269 4.12630 4.36143 4.44902 4.47723 4.49078 4.58266 4.62746 4.71847 4.78839 4.81098 4.92660 4.98515 5.01262 5.10252 5.14215 5.15996 5.22185 5.31126 5.34424 5.46369 5.49111 5.55975 5.57202 5.66784 5.97421 6.34809 6.75462 6.86340 7.46600 7.53781 7.71161 8.53241 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.050693 B = 0.003208 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.208011 B = 8726.540316 C = 9105.282873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.116 4.116 7 C -0.072 4.072 8 H 0.053 0.947 9 C -0.117 4.117 10 C 0.489 3.511 11 O -0.578 6.578 12 N -0.622 5.622 13 C -0.042 4.042 14 C -0.063 4.063 15 N -0.312 5.312 16 N -0.170 5.170 17 C -0.354 4.354 18 H 0.141 0.859 19 C -0.009 4.009 20 N -0.827 5.827 21 Si 1.020 2.980 22 H -0.240 1.240 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.083 4.083 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.419 0.581 38 H 0.165 0.835 39 H 0.275 0.725 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 7.088 16.887 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.164 4.164 6 C -0.154 4.154 7 C -0.091 4.091 8 H 0.072 0.928 9 C -0.156 4.156 10 C 0.279 3.721 11 O -0.457 6.457 12 N -0.268 5.268 13 C -0.149 4.149 14 C -0.238 4.238 15 N -0.144 5.144 16 N 0.060 4.940 17 C -0.485 4.485 18 H 0.158 0.842 19 C -0.220 4.220 20 N -0.455 5.455 21 Si 0.839 3.161 22 H -0.162 1.162 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.234 4.234 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.256 0.744 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.787 6.626 15.767 18.792 hybrid contribution -0.363 -0.112 -0.245 0.452 sum -8.150 6.514 15.522 18.703 Atomic orbital electron populations 1.22027 0.93623 1.02623 1.02360 1.21768 0.96935 0.98887 0.93108 0.90878 1.22438 0.96711 0.99010 0.96966 1.22512 0.98381 1.00116 0.95345 1.22350 0.99167 0.97593 0.96298 1.21520 0.95084 0.96660 0.95806 0.92807 1.21985 0.99916 1.02451 0.91235 1.21709 0.86233 0.78332 0.85873 1.90574 1.17984 1.58984 1.78156 1.42615 1.10524 1.56773 1.16873 1.17412 0.91954 1.12886 0.92616 1.24144 0.97033 1.06233 0.96404 1.78134 1.00090 1.22620 1.13567 1.44849 1.03104 1.33162 1.12862 1.20654 0.96324 1.37311 0.94217 0.84161 1.26905 0.94297 0.96964 1.03804 1.70415 1.01287 1.37692 1.36093 0.84521 0.80130 0.77065 0.74371 1.16244 1.19812 1.19801 1.22019 0.97196 1.11514 0.92630 0.91891 0.91780 0.91580 0.90735 0.90682 0.92008 0.91248 0.94333 0.92369 0.86395 0.86105 0.74382 0.81798 0.91482 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 7.87 71.98 0.57 -1.13 16 2 C -0.09 -1.38 3.50 -10.07 -0.04 -1.42 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.67 6.36 31.67 0.20 -1.47 16 5 C -0.13 -2.41 6.91 31.89 0.22 -2.19 16 6 C -0.12 -2.93 5.42 31.67 0.17 -2.76 16 7 C -0.07 -1.61 2.55 -10.07 -0.03 -1.64 16 8 H 0.05 1.49 7.92 -2.39 -0.02 1.47 16 9 C -0.12 -2.42 3.88 29.85 0.12 -2.31 16 10 C 0.49 16.43 7.58 87.66 0.66 17.10 16 11 O -0.58 -25.21 11.98 -3.09 -0.04 -25.25 16 12 N -0.62 -21.19 5.47 -303.93 -1.66 -22.85 16 13 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 14 C -0.06 -3.54 10.85 85.42 0.93 -2.61 16 15 N -0.31 -19.33 10.40 -56.47 -0.59 -19.92 16 16 N -0.17 -9.67 3.74 -190.02 -0.71 -10.38 16 17 C -0.35 -19.07 10.25 84.01 0.86 -18.21 16 18 H 0.14 6.54 7.83 -2.91 -0.02 6.51 16 19 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 20 N -0.83 -48.75 11.81 21.66 0.26 -48.49 16 21 Si 1.02 39.20 29.55 68.60 2.03 41.22 16 22 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 23 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 C -0.08 -3.92 11.49 83.37 0.96 -2.97 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.67 6.70 -2.39 -0.02 0.66 16 28 H 0.07 0.68 6.79 -2.39 -0.02 0.67 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.98 7.85 -2.38 -0.02 0.96 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 1.23 7.66 -2.38 -0.02 1.21 16 34 H 0.06 1.46 7.76 -2.39 -0.02 1.44 16 35 H 0.12 1.88 6.87 -2.39 -0.02 1.86 16 36 H 0.12 1.87 6.46 -2.39 -0.02 1.85 16 37 H 0.42 10.08 8.83 -92.71 -0.82 9.26 16 38 H 0.17 9.37 5.92 -2.91 -0.02 9.36 16 39 H 0.28 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -77.34 321.00 4.87 -72.46 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: 0.23 Total: 34.51 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 5.35 Total: -21.31 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -2.70 Total: -101.63 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.04 Total: -25.25 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.22 kcal Total: -77.34 4.87 -72.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769371891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.719 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds