Wall clock time and date at job start Mon Mar 30 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.05439 * 2 1 4 4 C 1.53874 * 110.02978 * 121.41359 * 2 1 3 5 5 C 1.54269 * 106.59640 * 119.28574 * 4 2 1 6 6 C 1.55028 * 104.28028 * 23.51604 * 5 4 2 7 7 C 1.54257 * 110.03084 * 238.57969 * 2 1 3 8 8 H 1.08998 * 110.49112 * 335.91650 * 7 2 1 9 9 C 1.53000 * 110.48509 * 98.42985 * 7 2 1 10 10 C 1.50702 * 109.47267 * 183.16110 * 9 7 2 11 11 O 1.21302 * 119.99753 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99993 * 180.02562 * 10 9 7 13 13 C 1.40593 * 119.99750 * 179.97438 * 12 10 9 14 14 C 1.40649 * 126.08674 * 0.03759 * 13 12 10 15 15 N 1.30909 * 108.39054 * 179.70405 * 14 13 12 16 16 N 1.40070 * 108.40315 * 0.41098 * 15 14 13 17 17 C 1.37322 * 126.06589 * 179.85060 * 16 15 14 18 18 H 1.07998 * 120.00219 * 185.44859 * 17 16 15 19 19 C 1.38989 * 120.00001 * 5.17634 * 17 16 15 20 20 N 1.31295 * 120.00227 * 354.31114 * 19 17 16 21 21 Si 1.86803 * 120.00145 * 174.31106 * 19 17 16 22 22 H 1.48494 * 109.47248 * 94.97708 * 21 19 17 23 23 H 1.48500 * 109.47261 * 214.98192 * 21 19 17 24 24 H 1.48496 * 109.46966 * 334.98056 * 21 19 17 25 25 C 1.35688 * 126.08299 * 179.97438 * 13 12 10 26 26 H 1.09003 * 109.47211 * 181.41919 * 1 2 3 27 27 H 1.09003 * 109.47046 * 301.41772 * 1 2 3 28 28 H 1.08997 * 109.46947 * 61.41337 * 1 2 3 29 29 H 1.09002 * 110.02980 * 238.57066 * 4 2 1 30 30 H 1.08996 * 110.03539 * 359.97438 * 4 2 1 31 31 H 1.08998 * 110.48358 * 142.28447 * 5 4 2 32 32 H 1.08991 * 110.48536 * 264.79488 * 5 4 2 33 33 H 1.08997 * 110.87338 * 203.90112 * 6 5 4 34 34 H 1.09001 * 110.69819 * 80.48198 * 6 5 4 35 35 H 1.09005 * 109.47660 * 63.15772 * 9 7 2 36 36 H 1.09003 * 109.47321 * 303.15422 * 9 7 2 37 37 H 0.96996 * 120.00481 * 359.97438 * 12 10 9 38 38 H 1.08005 * 125.80026 * 359.97167 * 14 13 12 39 39 H 0.96997 * 120.00133 * 179.97438 * 20 19 17 40 40 H 1.07994 * 126.24021 * 0.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7535 1.2338 5 6 2.8874 -1.9406 0.7036 6 6 3.3131 -1.5033 -0.7215 7 6 2.0584 -0.7555 -1.2367 8 1 1.3133 -1.4644 -1.5979 9 6 2.4392 0.2296 -2.3437 10 6 2.8783 -0.5339 -3.5666 11 8 2.8863 -1.7468 -3.5537 12 7 3.2630 0.1309 -4.6741 13 6 3.6731 -0.5815 -5.8147 14 6 3.7308 -1.9811 -5.9409 15 7 4.1529 -2.2700 -7.1459 16 7 4.3895 -1.0714 -7.8308 17 6 4.8436 -0.9538 -9.1215 18 1 5.0763 0.0204 -9.5254 19 6 5.0092 -2.0890 -9.9060 20 7 4.8395 -3.2804 -9.3810 21 14 5.4734 -1.9199 -11.7076 22 1 6.9467 -2.0368 -11.8522 23 1 4.8122 -2.9934 -12.4921 24 1 5.0303 -0.5948 -12.2105 25 6 4.0825 -0.0411 -6.9900 26 1 -0.3634 -1.0274 0.0255 27 1 -0.3633 0.5357 0.8770 28 1 -0.3633 0.4917 -0.9024 29 1 2.6866 -0.0952 1.8325 30 1 1.2229 -1.1188 1.8327 31 1 3.7637 -2.1036 1.3310 32 1 2.2778 -2.8430 0.6595 33 1 3.5294 -2.3705 -1.3455 34 1 4.1717 -0.8332 -0.6785 35 1 3.2553 0.8651 -1.9997 36 1 1.5768 0.8483 -2.5920 37 1 3.2569 1.1008 -4.6842 38 1 3.4671 -2.6959 -5.1754 39 1 4.9547 -4.0727 -9.9287 40 1 4.1526 1.0121 -7.2184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769371893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:24 Heat of formation + Delta-G solvation = -0.193554 kcal Electronic energy + Delta-G solvation = -21091.334156 eV Core-core repulsion = 17906.000172 eV Total energy + Delta-G solvation = -3185.333984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.69609 -40.54449 -38.98762 -35.86191 -34.91392 -32.67184 -32.10167 -31.97931 -29.64442 -27.40124 -26.52363 -25.20476 -22.86192 -22.08930 -21.26779 -21.01181 -20.29398 -19.24036 -17.78387 -17.36092 -16.89046 -16.39742 -16.22136 -15.74517 -15.57355 -15.20899 -14.81971 -14.62968 -14.49423 -14.06240 -13.64361 -13.48114 -13.27874 -13.11794 -12.91505 -12.83130 -12.68073 -12.08295 -11.89527 -11.75238 -11.73144 -11.54403 -11.43176 -11.35459 -11.15872 -10.98093 -10.80951 -10.47623 -10.08909 -8.48945 -8.46811 -6.23396 1.24804 1.39583 1.57005 1.59959 1.90801 2.08435 2.39164 2.57025 2.95875 3.08564 3.67429 3.75647 3.84398 4.11936 4.37339 4.44278 4.48066 4.49061 4.59770 4.63192 4.72712 4.76509 4.82310 4.86794 4.99889 5.01672 5.09053 5.13293 5.16842 5.25545 5.31062 5.34798 5.38935 5.42988 5.56274 5.58619 5.68201 5.97394 6.34983 6.75450 6.86401 7.46736 7.53817 7.71218 8.52859 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.051004 B = 0.003125 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.840136 B = 8956.815441 C = 9223.352127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.091 0.909 4 C -0.116 4.116 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.071 4.071 8 H 0.057 0.943 9 C -0.116 4.116 10 C 0.492 3.508 11 O -0.576 6.576 12 N -0.622 5.622 13 C -0.042 4.042 14 C -0.062 4.062 15 N -0.313 5.313 16 N -0.170 5.170 17 C -0.356 4.356 18 H 0.141 0.859 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.243 1.243 25 C -0.083 4.083 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.419 0.581 38 H 0.165 0.835 39 H 0.276 0.724 40 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 11.959 15.732 20.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.153 4.153 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.090 4.090 8 H 0.075 0.925 9 C -0.155 4.155 10 C 0.281 3.719 11 O -0.456 6.456 12 N -0.268 5.268 13 C -0.149 4.149 14 C -0.238 4.238 15 N -0.145 5.145 16 N 0.060 4.940 17 C -0.487 4.487 18 H 0.158 0.842 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.838 3.162 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.166 1.166 25 C -0.233 4.233 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.256 0.744 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -4.955 9.961 14.916 18.608 hybrid contribution 0.068 0.369 -0.331 0.500 sum -4.886 10.330 14.585 18.529 Atomic orbital electron populations 1.21893 0.94611 1.01464 1.02227 1.21786 0.95934 0.99831 0.92951 0.89065 1.22211 0.99452 0.96537 0.97141 1.22366 0.99784 0.98412 0.95687 1.22549 0.97533 0.99703 0.96114 1.21782 0.97192 0.96067 0.93947 0.92463 1.21748 1.04461 0.98678 0.90647 1.21602 0.77094 0.88346 0.84870 1.90574 1.55079 1.16414 1.83507 1.42616 1.64200 1.09829 1.10163 1.17411 1.16709 0.90821 0.89927 1.24147 1.08082 0.95287 0.96240 1.78127 1.25024 1.06087 1.05263 1.44834 1.36804 1.02732 1.09585 1.20611 1.46030 0.97334 0.84681 0.84206 1.26902 0.95078 0.93726 1.06181 1.70411 1.37778 0.98939 1.38297 0.84578 0.78623 0.79599 0.73380 1.18939 1.20236 1.16594 1.22021 1.14708 0.95095 0.91507 0.93681 0.91397 0.92482 0.90663 0.91253 0.91291 0.92758 0.94055 0.91484 0.86339 0.86398 0.74370 0.81764 0.91462 0.79538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.84 71.98 0.64 -1.44 16 2 C -0.09 -1.33 3.07 -10.07 -0.03 -1.36 16 3 H 0.09 1.09 7.84 -2.39 -0.02 1.07 16 4 C -0.12 -1.76 6.46 31.32 0.20 -1.56 16 5 C -0.12 -2.47 6.83 31.72 0.22 -2.26 16 6 C -0.12 -3.01 5.70 31.93 0.18 -2.83 16 7 C -0.07 -1.57 1.99 -9.72 -0.02 -1.59 16 8 H 0.06 1.58 7.67 -2.39 -0.02 1.56 16 9 C -0.12 -2.37 5.05 29.85 0.15 -2.22 16 10 C 0.49 16.39 7.60 87.66 0.67 17.05 16 11 O -0.58 -24.99 11.76 -3.10 -0.04 -25.02 16 12 N -0.62 -21.11 5.47 -303.92 -1.66 -22.77 16 13 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 14 C -0.06 -3.49 10.85 85.42 0.93 -2.57 16 15 N -0.31 -19.36 10.42 -56.46 -0.59 -19.95 16 16 N -0.17 -9.65 3.74 -190.02 -0.71 -10.36 16 17 C -0.36 -19.16 10.24 84.01 0.86 -18.30 16 18 H 0.14 6.51 7.84 -2.91 -0.02 6.49 16 19 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 20 N -0.83 -48.68 11.84 21.66 0.26 -48.42 16 21 Si 1.02 39.16 29.56 68.60 2.03 41.18 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 23 H -0.28 -10.58 7.11 99.48 0.71 -9.88 16 24 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 25 C -0.08 -3.91 11.49 83.38 0.96 -2.95 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.04 1.34 7.16 -2.39 -0.02 1.32 16 34 H 0.07 1.54 8.00 -2.39 -0.02 1.52 16 35 H 0.12 1.80 8.06 -2.38 -0.02 1.78 16 36 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.42 10.04 8.83 -92.71 -0.82 9.22 16 38 H 0.17 9.36 5.92 -2.91 -0.02 9.34 16 39 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -77.12 326.96 4.99 -72.13 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: 0.22 Total: 34.87 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 5.48 Total: -21.66 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -2.70 Total: -101.50 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.02 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -77.12 4.99 -72.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769371893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.941 kcal (2) G-P(sol) polarization free energy of solvation -77.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds