Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46707 * 2 1 4 4 C 1.50699 * 109.47333 * 120.00071 * 2 1 3 5 5 C 1.38649 * 120.78810 * 73.54613 * 4 2 1 6 6 C 1.38202 * 119.16028 * 179.75779 * 5 4 2 7 7 N 1.31872 * 120.76546 * 0.53289 * 6 5 4 8 8 C 1.31875 * 121.72275 * 359.73939 * 7 6 5 9 9 C 1.38203 * 120.76199 * 359.97438 * 8 7 6 10 10 N 1.46894 * 109.46678 * 240.00393 * 2 1 3 11 11 C 1.46899 * 111.00577 * 54.91283 * 10 2 1 12 12 C 1.46902 * 110.99928 * 178.86571 * 10 2 1 13 13 C 1.50697 * 109.47306 * 169.99670 * 12 10 2 14 14 O 1.21274 * 119.99997 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99831 * 180.02562 * 13 12 10 16 16 C 1.46504 * 119.99989 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47017 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00195 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99824 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47120 * 89.99609 * 21 19 17 23 23 H 1.48498 * 109.46962 * 209.99821 * 21 19 17 24 24 H 1.48496 * 109.47243 * 329.99448 * 21 19 17 25 25 H 1.09004 * 109.46822 * 299.99603 * 1 2 3 26 26 H 1.08999 * 109.47171 * 59.99852 * 1 2 3 27 27 H 1.08999 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.42091 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.61950 * 180.30076 * 6 5 4 30 30 H 1.07996 * 119.61175 * 179.97438 * 8 7 6 31 31 H 1.08001 * 120.41184 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.46947 * 53.18154 * 11 10 2 33 33 H 1.09001 * 109.47286 * 173.18528 * 11 10 2 34 34 H 1.08999 * 109.46657 * 293.18150 * 11 10 2 35 35 H 1.09003 * 109.46980 * 290.00430 * 12 10 2 36 36 H 1.09007 * 109.47169 * 49.99632 * 12 10 2 37 37 H 0.97002 * 120.00393 * 359.97438 * 15 13 12 38 38 H 1.09003 * 109.46710 * 299.99613 * 16 15 13 39 39 H 1.08997 * 109.47286 * 59.99435 * 16 15 13 40 40 H 0.96997 * 119.99598 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9510 -2.0905 1.3361 6 6 2.4266 -2.7077 2.4775 7 7 2.9431 -1.9989 3.4623 8 6 3.0315 -0.6846 3.3986 9 6 2.5818 0.0010 2.2860 10 7 2.0196 -0.6924 -1.1995 11 6 1.4519 -0.1001 -2.4180 12 6 3.4878 -0.6886 -1.2471 13 6 3.9572 -1.6080 -2.3450 14 8 3.1484 -2.2070 -3.0215 15 7 5.2760 -1.7645 -2.5751 16 6 5.7323 -2.6579 -3.6428 17 6 7.2385 -2.6539 -3.6915 18 1 7.7997 -2.0471 -2.9965 19 6 7.9001 -3.4260 -4.6228 20 7 9.2146 -3.4222 -4.6657 21 14 6.9294 -4.4762 -5.8246 22 1 6.6405 -3.6880 -7.0495 23 1 7.7236 -5.6781 -6.1851 24 1 5.6525 -4.8975 -5.1944 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.5252 -2.6761 0.5348 29 1 2.3713 -3.7827 2.5656 30 1 3.4603 -0.1379 4.2253 31 1 2.6574 1.0773 2.2396 32 1 1.6349 0.9744 -2.4189 33 1 1.9212 -0.5494 -3.2931 34 1 0.3782 -0.2858 -2.4459 35 1 3.8423 0.3232 -1.4440 36 1 3.8833 -1.0325 -0.2913 37 1 5.9230 -1.2850 -2.0343 38 1 5.3774 -3.6696 -3.4464 39 1 5.3373 -2.3134 -4.5985 40 1 9.6799 -3.9651 -5.3211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769926072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = 8.473524 kcal Electronic energy + Delta-G solvation = -21311.594862 eV Core-core repulsion = 18126.636711 eV Total energy + Delta-G solvation = -3184.958151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55432 -39.22985 -37.40115 -34.31929 -33.12020 -32.37576 -31.29363 -30.56929 -28.63097 -27.21827 -25.37493 -23.73315 -23.20881 -21.94529 -20.43292 -19.83286 -17.39195 -17.00792 -16.74757 -16.02936 -15.78079 -15.53420 -15.31500 -14.56304 -14.49640 -14.36796 -13.97201 -13.66738 -13.55730 -13.33741 -12.73122 -12.56541 -12.42017 -12.21218 -12.10743 -11.88076 -11.64022 -11.37854 -11.27084 -11.01310 -10.75707 -9.97844 -9.70595 -9.55111 -9.50912 -9.23966 -9.19604 -8.78646 -8.39840 -8.13441 -6.22426 -4.24804 1.02784 1.11718 3.20889 3.26199 3.32337 3.41192 3.46379 3.72677 4.13977 4.32321 4.35665 4.38639 4.67773 4.89735 4.98770 5.00781 5.12146 5.12639 5.14174 5.26642 5.40856 5.47052 5.51690 5.52993 5.57458 5.59140 5.73471 5.89684 5.90316 6.13576 6.23667 6.59842 6.74449 6.88023 6.97098 7.06181 7.22326 7.38355 7.87070 8.13045 8.50531 8.74552 8.93335 9.37677 10.89577 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.004098 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.559129 B = 6830.835781 C = 7570.714945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.119 3.881 3 H 0.052 0.948 4 C -0.037 4.037 5 C -0.141 4.141 6 C 0.095 3.905 7 N -0.488 5.488 8 C 0.094 3.906 9 C -0.172 4.172 10 N -0.514 5.514 11 C 0.020 3.980 12 C 0.034 3.966 13 C 0.502 3.498 14 O -0.541 6.541 15 N -0.707 5.707 16 C 0.223 3.777 17 C -0.544 4.544 18 H 0.079 0.921 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.260 1.260 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.131 0.869 32 H 0.020 0.980 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.395 0.605 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 9.102 12.685 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.010 3.990 3 H 0.070 0.930 4 C -0.045 4.045 5 C -0.161 4.161 6 C -0.062 4.062 7 N -0.197 5.197 8 C -0.063 4.063 9 C -0.192 4.192 10 N -0.238 5.238 11 C -0.128 4.128 12 C -0.097 4.097 13 C 0.287 3.713 14 O -0.419 6.419 15 N -0.357 5.357 16 C 0.100 3.900 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.530 5.530 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.185 1.185 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.172 0.828 30 H 0.171 0.829 31 H 0.149 0.851 32 H 0.038 0.962 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.228 0.772 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.571 7.656 12.841 22.318 hybrid contribution 0.117 0.988 -1.194 1.554 sum -16.454 8.644 11.647 21.934 Atomic orbital electron populations 1.21877 0.92738 1.03271 1.02042 1.20619 0.96170 0.94654 0.87521 0.92989 1.20196 0.95325 0.94259 0.94766 1.22119 0.99993 0.94848 0.99128 1.22833 0.93797 1.00400 0.89137 1.67670 1.14179 1.08110 1.29708 1.22693 0.96276 0.90304 0.97004 1.22028 1.00987 1.01206 0.95006 1.61672 1.05841 1.54474 1.01857 1.22578 1.00989 0.96036 0.93170 1.22014 0.89103 0.98861 0.99771 1.20274 0.83144 0.83089 0.84823 1.90621 1.53551 1.48149 1.49555 1.46182 1.05758 1.46898 1.36818 1.19469 0.95528 0.89290 0.85667 1.21094 0.88683 1.28951 1.19475 0.90300 1.24797 0.94824 0.96055 0.96921 1.69882 1.07008 1.40268 1.35810 0.86812 0.80727 0.80369 0.81759 1.19877 1.20878 1.18478 0.92050 0.91610 0.91255 0.83897 0.82760 0.82948 0.85093 0.96167 0.89054 0.91086 0.92240 0.88484 0.77151 0.95700 0.96253 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.73 37.16 0.32 -0.87 16 2 C 0.12 1.18 2.29 -68.86 -0.16 1.02 16 3 H 0.05 0.47 8.00 -51.93 -0.42 0.06 16 4 C -0.04 -0.38 3.46 -104.32 -0.36 -0.75 16 5 C -0.14 -1.60 9.07 -39.44 -0.36 -1.95 16 6 C 0.09 1.08 11.18 -17.55 -0.20 0.89 16 7 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16 8 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 9 C -0.17 -1.60 9.77 -39.45 -0.39 -1.98 16 10 N -0.51 -6.53 3.95 -237.73 -0.94 -7.47 16 11 C 0.02 0.24 8.52 60.06 0.51 0.76 16 12 C 0.03 0.47 5.25 -4.98 -0.03 0.44 16 13 C 0.50 9.37 7.45 -10.99 -0.08 9.28 16 14 O -0.54 -11.85 14.40 5.56 0.08 -11.77 16 15 N -0.71 -14.23 5.55 -61.47 -0.34 -14.58 16 16 C 0.22 5.46 4.50 -5.19 -0.02 5.44 16 17 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 18 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 19 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 20 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 21 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.51 6.49 -51.93 -0.34 0.17 16 27 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.14 1.68 7.98 -52.49 -0.42 1.26 16 29 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.13 0.91 8.04 -52.49 -0.42 0.48 16 32 H 0.02 0.21 8.11 -51.93 -0.42 -0.21 16 33 H 0.09 1.41 5.78 -51.93 -0.30 1.11 16 34 H 0.07 0.77 6.64 -51.93 -0.35 0.43 16 35 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 36 H 0.10 1.29 6.62 -51.93 -0.34 0.95 16 37 H 0.40 7.07 8.32 -40.82 -0.34 6.73 16 38 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 330.55 15.07 4.98 4.98 Total: -1.00 -32.54 330.55 -7.44 -39.98 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.80 Total: 4.08 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -1.39 Total: -0.14 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.64 Total: -53.90 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.77 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.54 -7.44 -39.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769926072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.449 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds