Wall clock time and date at job start Mon Mar 30 2020 02:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46707 * 2 1 4 4 C 1.50699 * 109.47333 * 120.00071 * 2 1 3 5 5 C 1.38649 * 120.78810 * 73.54613 * 4 2 1 6 6 C 1.38202 * 119.16028 * 179.75779 * 5 4 2 7 7 N 1.31872 * 120.76546 * 0.53289 * 6 5 4 8 8 C 1.31875 * 121.72275 * 359.73939 * 7 6 5 9 9 C 1.38203 * 120.76199 * 359.97438 * 8 7 6 10 10 N 1.46894 * 109.46678 * 240.00393 * 2 1 3 11 11 C 1.46899 * 111.00577 * 54.91283 * 10 2 1 12 12 C 1.46902 * 110.99928 * 178.86571 * 10 2 1 13 13 C 1.50697 * 109.47306 * 169.99670 * 12 10 2 14 14 O 1.21274 * 119.99997 * 0.02562 * 13 12 10 15 15 N 1.34779 * 119.99831 * 180.02562 * 13 12 10 16 16 C 1.46504 * 119.99989 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47017 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00280 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99965 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00195 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99824 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47120 * 89.99609 * 21 19 17 23 23 H 1.48498 * 109.46962 * 209.99821 * 21 19 17 24 24 H 1.48496 * 109.47243 * 329.99448 * 21 19 17 25 25 H 1.09004 * 109.46822 * 299.99603 * 1 2 3 26 26 H 1.08999 * 109.47171 * 59.99852 * 1 2 3 27 27 H 1.08999 * 109.47073 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.42091 * 0.02562 * 5 4 2 29 29 H 1.08001 * 119.61950 * 180.30076 * 6 5 4 30 30 H 1.07996 * 119.61175 * 179.97438 * 8 7 6 31 31 H 1.08001 * 120.41184 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.46947 * 53.18154 * 11 10 2 33 33 H 1.09001 * 109.47286 * 173.18528 * 11 10 2 34 34 H 1.08999 * 109.46657 * 293.18150 * 11 10 2 35 35 H 1.09003 * 109.46980 * 290.00430 * 12 10 2 36 36 H 1.09007 * 109.47169 * 49.99632 * 12 10 2 37 37 H 0.97002 * 120.00393 * 359.97438 * 15 13 12 38 38 H 1.09003 * 109.46710 * 299.99613 * 16 15 13 39 39 H 1.08997 * 109.47286 * 59.99435 * 16 15 13 40 40 H 0.96997 * 119.99598 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9510 -2.0905 1.3361 6 6 2.4266 -2.7077 2.4775 7 7 2.9431 -1.9989 3.4623 8 6 3.0315 -0.6846 3.3986 9 6 2.5818 0.0010 2.2860 10 7 2.0196 -0.6924 -1.1995 11 6 1.4519 -0.1001 -2.4180 12 6 3.4878 -0.6886 -1.2471 13 6 3.9572 -1.6080 -2.3450 14 8 3.1484 -2.2070 -3.0215 15 7 5.2760 -1.7645 -2.5751 16 6 5.7323 -2.6579 -3.6428 17 6 7.2385 -2.6539 -3.6915 18 1 7.7997 -2.0471 -2.9965 19 6 7.9001 -3.4260 -4.6228 20 7 9.2146 -3.4222 -4.6657 21 14 6.9294 -4.4762 -5.8246 22 1 6.6405 -3.6880 -7.0495 23 1 7.7236 -5.6781 -6.1851 24 1 5.6525 -4.8975 -5.1944 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.5252 -2.6761 0.5348 29 1 2.3713 -3.7827 2.5656 30 1 3.4603 -0.1379 4.2253 31 1 2.6574 1.0773 2.2396 32 1 1.6349 0.9744 -2.4189 33 1 1.9212 -0.5494 -3.2931 34 1 0.3782 -0.2858 -2.4459 35 1 3.8423 0.3232 -1.4440 36 1 3.8833 -1.0325 -0.2913 37 1 5.9230 -1.2850 -2.0343 38 1 5.3774 -3.6696 -3.4464 39 1 5.3373 -2.3134 -4.5985 40 1 9.6799 -3.9651 -5.3211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769926072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:32 Heat of formation + Delta-G solvation = -15.281343 kcal Electronic energy + Delta-G solvation = -21312.624951 eV Core-core repulsion = 18126.636711 eV Total energy + Delta-G solvation = -3185.988239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42131 -40.57501 -38.46447 -36.12967 -34.41346 -34.02594 -32.06333 -31.54898 -30.17840 -28.49131 -26.43626 -24.58740 -24.17152 -23.68188 -21.55997 -21.14431 -19.16503 -18.03265 -17.68694 -17.57612 -16.90994 -16.69217 -16.41176 -16.12730 -15.78965 -15.42256 -15.18409 -14.78006 -14.54558 -14.47140 -14.35762 -14.04342 -13.85586 -13.16457 -13.11838 -12.90273 -12.78738 -12.72230 -12.54355 -12.27695 -12.10590 -11.94184 -11.67049 -10.92608 -10.73586 -10.49881 -10.35230 -10.02198 -9.91285 -9.31867 -8.41040 -6.48186 0.25739 0.31945 1.31775 1.34249 1.46836 1.73454 2.24688 2.28085 2.87559 2.94440 3.04069 3.53748 3.65588 3.86402 3.94247 4.11601 4.22897 4.29602 4.30502 4.32726 4.38106 4.55166 4.63231 4.75711 4.78202 4.81981 4.88856 4.98193 5.02401 5.10638 5.13527 5.25406 5.30433 5.41864 5.53269 5.83118 5.87487 6.08491 6.10574 6.52904 6.85411 7.08309 7.15136 7.42395 8.73818 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020913 B = 0.004098 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.559129 B = 6830.835781 C = 7570.714945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.122 3.878 3 H 0.073 0.927 4 C -0.042 4.042 5 C -0.152 4.152 6 C 0.080 3.920 7 N -0.514 5.514 8 C 0.086 3.914 9 C -0.164 4.164 10 N -0.531 5.531 11 C 0.024 3.976 12 C 0.049 3.951 13 C 0.501 3.499 14 O -0.574 6.574 15 N -0.709 5.709 16 C 0.235 3.765 17 C -0.548 4.548 18 H 0.058 0.942 19 C 0.027 3.973 20 N -0.932 5.932 21 Si 0.938 3.062 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.261 1.261 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.162 0.838 30 H 0.178 0.822 31 H 0.162 0.838 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.406 0.594 38 H 0.010 0.990 39 H 0.012 0.988 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.632 10.701 13.341 24.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 H 0.091 0.909 4 C -0.051 4.051 5 C -0.172 4.172 6 C -0.076 4.076 7 N -0.224 5.224 8 C -0.070 4.070 9 C -0.184 4.184 10 N -0.256 5.256 11 C -0.123 4.123 12 C -0.082 4.082 13 C 0.288 3.712 14 O -0.454 6.454 15 N -0.360 5.360 16 C 0.111 3.889 17 C -0.585 4.585 18 H 0.076 0.924 19 C -0.173 4.173 20 N -0.570 5.570 21 Si 0.762 3.238 22 H -0.188 1.188 23 H -0.198 1.198 24 H -0.186 1.186 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.149 0.851 29 H 0.179 0.821 30 H 0.195 0.805 31 H 0.179 0.821 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.241 0.759 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.898 9.278 13.522 24.275 hybrid contribution 0.517 0.547 -1.318 1.518 sum -17.381 9.825 12.204 23.400 Atomic orbital electron populations 1.21866 0.91629 1.02852 1.03240 1.20699 0.96968 0.95078 0.85762 0.90935 1.20348 0.95392 0.93877 0.95451 1.22073 1.00654 0.95604 0.98854 1.22993 0.94232 1.01005 0.89336 1.67682 1.15073 1.09440 1.30218 1.23197 0.95892 0.89820 0.98136 1.22310 0.99479 1.02627 0.93945 1.61608 1.04963 1.55984 1.03053 1.22485 1.01310 0.96858 0.91690 1.21857 0.90169 0.98544 0.97613 1.21131 0.81933 0.82904 0.85229 1.90608 1.54211 1.49557 1.51022 1.46051 1.06989 1.46698 1.36263 1.19046 0.93520 0.89475 0.86812 1.21300 0.90141 1.28284 1.18818 0.92399 1.25603 0.95662 0.97345 0.98738 1.69984 1.08531 1.41513 1.37001 0.85848 0.79224 0.79056 0.79707 1.18844 1.19836 1.18570 0.90457 0.90777 0.92527 0.85053 0.82122 0.80507 0.82058 0.94081 0.92534 0.89865 0.89712 0.87708 0.75865 0.97223 0.97019 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.73 71.98 0.63 -1.31 16 2 C 0.12 2.05 2.29 44.17 0.10 2.15 16 3 H 0.07 0.97 8.00 -2.39 -0.02 0.95 16 4 C -0.04 -0.77 3.46 -19.67 -0.07 -0.84 16 5 C -0.15 -3.32 9.07 22.36 0.20 -3.12 16 6 C 0.08 1.81 11.18 84.68 0.95 2.75 16 7 N -0.51 -12.04 10.36 -195.84 -2.03 -14.07 16 8 C 0.09 1.54 11.18 84.68 0.95 2.49 16 9 C -0.16 -2.50 9.77 22.36 0.22 -2.28 16 10 N -0.53 -12.39 3.95 -906.04 -3.58 -15.97 16 11 C 0.02 0.54 8.52 127.69 1.09 1.63 16 12 C 0.05 1.25 5.25 85.56 0.45 1.70 16 13 C 0.50 18.34 7.45 87.66 0.65 19.00 16 14 O -0.57 -25.19 14.40 -3.01 -0.04 -25.24 16 15 N -0.71 -28.33 5.55 -466.79 -2.59 -30.92 16 16 C 0.24 11.59 4.50 85.63 0.38 11.97 16 17 C -0.55 -30.40 9.83 25.60 0.25 -30.15 16 18 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 19 C 0.03 1.52 5.47 84.65 0.46 1.99 16 20 N -0.93 -55.87 13.96 21.45 0.30 -55.57 16 21 Si 0.94 44.27 27.47 68.60 1.88 46.15 16 22 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 24 H -0.26 -12.29 6.54 99.48 0.65 -11.63 16 25 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.07 0.92 6.49 -2.39 -0.02 0.90 16 27 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 28 H 0.13 3.12 7.98 -2.91 -0.02 3.10 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.16 1.45 8.04 -2.91 -0.02 1.43 16 32 H 0.04 0.75 8.11 -2.39 -0.02 0.73 16 33 H 0.06 1.71 5.78 -2.39 -0.01 1.69 16 34 H 0.08 1.65 6.64 -2.39 -0.02 1.63 16 35 H 0.09 1.77 8.12 -2.39 -0.02 1.75 16 36 H 0.10 2.56 6.62 -2.38 -0.02 2.54 16 37 H 0.41 14.31 8.32 -92.71 -0.77 13.54 16 38 H 0.01 0.51 7.20 -2.39 -0.02 0.50 16 39 H 0.01 0.60 7.57 -2.39 -0.02 0.59 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -70.54 330.55 0.42 -70.12 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.21 Total: 19.53 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 6.27 Total: 5.97 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -7.90 Total: -116.54 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.04 Total: -25.24 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -70.54 0.42 -70.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769926072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.838 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds