Wall clock time and date at job start Mon Mar 30 2020 02:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.47552 * 2 1 4 4 C 1.50704 * 109.47325 * 239.99663 * 2 1 3 5 5 C 1.38671 * 120.42025 * 99.99818 * 4 2 1 6 6 C 1.38626 * 118.42098 * 180.02562 * 5 4 2 7 7 C 1.38229 * 119.16278 * 359.97438 * 6 5 4 8 8 N 1.31855 * 120.76350 * 0.02562 * 7 6 5 9 9 C 1.31893 * 121.72246 * 359.69968 * 8 7 6 10 10 N 1.46898 * 109.47223 * 119.99947 * 2 1 3 11 11 C 1.46901 * 111.00443 * 176.04521 * 10 2 1 12 12 C 1.46906 * 110.99820 * 299.99834 * 10 2 1 13 13 C 1.50696 * 109.47351 * 169.99890 * 12 10 2 14 14 O 1.21285 * 119.99962 * 359.97438 * 13 12 10 15 15 N 1.34775 * 120.00393 * 180.02562 * 13 12 10 16 16 C 1.46497 * 120.00052 * 180.02562 * 15 13 12 17 17 C 1.50708 * 109.46912 * 180.02562 * 16 15 13 18 18 H 1.07994 * 119.99744 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99843 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00112 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99862 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.47144 * 119.99745 * 21 19 17 24 24 H 1.48497 * 109.47332 * 239.99818 * 21 19 17 25 25 H 1.09000 * 109.47552 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47057 * 300.00273 * 1 2 3 27 27 H 1.09007 * 109.46908 * 60.00057 * 1 2 3 28 28 H 1.08005 * 120.78678 * 359.97438 * 5 4 2 29 29 H 1.08007 * 120.41809 * 180.02562 * 6 5 4 30 30 H 1.07994 * 119.61640 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.61518 * 180.30810 * 9 8 7 32 32 H 1.09002 * 109.47401 * 183.95136 * 11 10 2 33 33 H 1.09001 * 109.46874 * 63.95149 * 11 10 2 34 34 H 1.09004 * 109.46970 * 303.95282 * 11 10 2 35 35 H 1.08997 * 109.46995 * 289.99871 * 12 10 2 36 36 H 1.09001 * 109.46848 * 49.99877 * 12 10 2 37 37 H 0.96996 * 119.99654 * 0.02562 * 15 13 12 38 38 H 1.08997 * 109.47181 * 299.99787 * 16 15 13 39 39 H 1.09001 * 109.47370 * 60.00228 * 16 15 13 40 40 H 0.96998 * 119.99904 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 2.4621 0.0129 -2.3327 6 6 2.9156 -0.6829 -3.4426 7 6 2.9246 -2.0648 -3.4138 8 7 2.5084 -2.7200 -2.3480 9 6 2.0755 -2.0910 -1.2725 10 7 2.0196 -0.6925 1.1994 11 6 3.4850 -0.7946 1.1871 12 6 1.5486 -0.0263 2.4211 13 6 1.8578 -0.8909 3.6159 14 8 2.4153 -1.9574 3.4647 15 7 1.5141 -0.4796 4.8525 16 6 1.8152 -1.3200 6.0141 17 6 1.3308 -0.6372 7.2672 18 1 0.8466 0.3261 7.2045 19 6 1.5057 -1.2423 8.4936 20 7 2.0949 -2.4157 8.5699 21 14 0.9059 -0.3956 10.0469 22 1 0.2818 0.9043 9.6926 23 1 -0.0963 -1.2569 10.7247 24 1 2.0547 -0.1617 10.9583 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 2.4433 1.0928 -2.3268 29 1 3.2582 -0.1519 -4.3185 30 1 3.2760 -2.6143 -4.2746 31 1 1.7470 -2.6616 -0.4165 32 1 3.8163 -1.3721 2.0501 33 1 3.9192 0.2043 1.2300 34 1 3.8069 -1.2916 0.2719 35 1 2.0518 0.9346 2.5280 36 1 0.4722 0.1325 2.3563 37 1 1.0673 0.3728 4.9733 38 1 1.3127 -2.2813 5.9071 39 1 2.8918 -1.4780 6.0790 40 1 2.2182 -2.8412 9.4328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772255799.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:19 Heat of formation + Delta-G solvation = 6.679692 kcal Electronic energy + Delta-G solvation = -21000.223782 eV Core-core repulsion = 17815.187845 eV Total energy + Delta-G solvation = -3185.035937 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58213 -39.10756 -37.20084 -34.17122 -33.00944 -32.32955 -31.88631 -30.01014 -28.61546 -26.62754 -24.80933 -23.83283 -23.55852 -22.26002 -20.42320 -19.59031 -17.45956 -17.03952 -16.76575 -16.02572 -15.41642 -15.39544 -15.02933 -14.69636 -14.40664 -14.20182 -13.83598 -13.76476 -13.31127 -13.22681 -12.78658 -12.52194 -12.36654 -11.99887 -11.92600 -11.68555 -11.66430 -11.20710 -11.09111 -10.94128 -10.84554 -10.31321 -9.97350 -9.55775 -9.37798 -9.08959 -8.99081 -8.73553 -8.26983 -7.84784 -6.16825 -4.23685 0.95877 1.12215 3.22996 3.29979 3.32847 3.39134 3.53505 3.73377 4.24090 4.26010 4.42247 4.58349 4.65918 4.83010 4.88061 5.04339 5.10816 5.18929 5.19612 5.32694 5.37084 5.50418 5.57489 5.64933 5.68287 5.71458 5.76882 5.91806 6.03474 6.11217 6.30085 6.58444 6.92645 7.05559 7.33182 7.46223 7.52910 7.67813 7.88859 7.97418 8.64339 8.79554 9.13641 9.43243 10.93399 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045792 B = 0.002999 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.314386 B = 9333.531340 C = 9633.222381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 H 0.050 0.950 4 C -0.127 4.127 5 C -0.075 4.075 6 C -0.178 4.178 7 C 0.091 3.909 8 N -0.487 5.487 9 C 0.129 3.871 10 N -0.515 5.515 11 C 0.018 3.982 12 C 0.031 3.969 13 C 0.499 3.501 14 O -0.538 6.538 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.542 4.542 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.152 0.848 31 H 0.167 0.833 32 H 0.096 0.904 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.389 0.611 38 H 0.027 0.973 39 H 0.026 0.974 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.098 8.500 -21.830 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.068 0.932 4 C -0.129 4.129 5 C -0.101 4.101 6 C -0.198 4.198 7 C -0.065 4.065 8 N -0.195 5.195 9 C -0.028 4.028 10 N -0.239 5.239 11 C -0.129 4.129 12 C -0.100 4.100 13 C 0.283 3.717 14 O -0.415 6.415 15 N -0.364 5.364 16 C 0.131 3.869 17 C -0.581 4.581 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.169 0.831 31 H 0.184 0.816 32 H 0.114 0.886 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.221 0.779 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.807 6.171 -21.786 22.658 hybrid contribution -0.130 2.654 0.941 2.819 sum -0.937 8.825 -20.845 22.655 Atomic orbital electron populations 1.21928 0.93042 1.03398 1.01910 1.20499 0.95928 0.94635 0.87449 0.93244 1.20766 1.00589 0.95705 0.95885 1.21445 0.95698 1.00316 0.92656 1.22064 1.02377 0.95924 0.99408 1.22797 0.95601 0.91747 0.96394 1.67817 1.10141 1.41237 1.00287 1.22891 0.92948 0.91555 0.95443 1.61671 1.11610 1.50873 0.99783 1.22600 0.86068 0.99922 1.04335 1.22115 1.02416 0.95702 0.89743 1.20248 0.80082 0.87147 0.84236 1.90633 1.42262 1.23074 1.85563 1.46444 1.59452 1.23572 1.06964 1.19083 0.96749 0.90422 0.80694 1.21264 1.40211 1.05476 0.91132 0.91895 1.24958 0.94931 0.94886 0.99293 1.69986 1.41713 1.15077 1.25464 0.86370 0.78514 0.79436 0.82631 1.19663 1.20786 1.20820 0.91163 0.91622 0.92096 0.85175 0.85025 0.83066 0.81576 0.88555 0.96389 0.91859 0.92400 0.87850 0.77872 0.95510 0.95646 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.97 37.15 0.33 -1.00 16 2 C 0.12 1.30 2.30 -68.87 -0.16 1.14 16 3 H 0.05 0.47 8.03 -51.93 -0.42 0.05 16 4 C -0.13 -1.36 3.73 -104.48 -0.39 -1.75 16 5 C -0.07 -0.66 9.82 -39.28 -0.39 -1.05 16 6 C -0.18 -1.48 10.11 -39.44 -0.40 -1.87 16 7 C 0.09 0.90 11.18 -17.54 -0.20 0.71 16 8 N -0.49 -6.23 10.36 -13.25 -0.14 -6.37 16 9 C 0.13 1.62 9.27 -17.55 -0.16 1.46 16 10 N -0.51 -6.95 3.72 -237.73 -0.88 -7.84 16 11 C 0.02 0.26 8.80 60.07 0.53 0.79 16 12 C 0.03 0.43 5.26 -4.97 -0.03 0.40 16 13 C 0.50 9.64 7.55 -10.99 -0.08 9.56 16 14 O -0.54 -12.58 14.31 5.55 0.08 -12.50 16 15 N -0.72 -14.67 5.55 -61.47 -0.34 -15.01 16 16 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 17 C -0.54 -14.60 9.28 -34.44 -0.32 -14.92 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -26.05 13.29 55.43 0.74 -25.32 16 21 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.56 6.20 -51.93 -0.32 0.24 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 30 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.17 2.29 7.72 -52.49 -0.40 1.89 16 32 H 0.10 1.68 5.88 -51.93 -0.31 1.38 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.87 6.01 -51.93 -0.31 0.56 16 35 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 36 H 0.10 1.20 5.83 -51.93 -0.30 0.89 16 37 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -32.60 332.16 -7.69 -40.29 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.74 Total: 4.35 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.38 Total: 1.66 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.63 Total: -54.53 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.60 -7.69 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772255799.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.968 kcal (2) G-P(sol) polarization free energy of solvation -32.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds