Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46869 * 2 1 4 4 C 1.50702 * 109.47013 * 119.99511 * 2 1 3 5 5 C 1.38676 * 120.41951 * 334.36656 * 4 2 1 6 6 C 1.38624 * 118.41837 * 179.78159 * 5 4 2 7 7 C 1.38227 * 119.16164 * 0.50596 * 6 5 4 8 8 N 1.31858 * 120.76666 * 359.73295 * 7 6 5 9 9 C 1.31891 * 121.72118 * 359.97438 * 8 7 6 10 10 N 1.46902 * 109.47137 * 239.99849 * 2 1 3 11 11 C 1.46903 * 111.00110 * 305.61698 * 10 2 1 12 12 C 1.46894 * 111.00080 * 69.57860 * 10 2 1 13 13 C 1.50700 * 109.47441 * 170.00013 * 12 10 2 14 14 O 1.21284 * 119.99737 * 359.97438 * 13 12 10 15 15 N 1.34779 * 120.00068 * 179.72109 * 13 12 10 16 16 C 1.46498 * 119.99521 * 180.27162 * 15 13 12 17 17 C 1.50704 * 109.46484 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00545 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99542 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00258 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00020 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.46779 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47338 * 120.00046 * 21 19 17 24 24 H 1.48500 * 109.46889 * 240.00496 * 21 19 17 25 25 H 1.08994 * 109.47519 * 299.99750 * 1 2 3 26 26 H 1.08998 * 109.46989 * 60.00801 * 1 2 3 27 27 H 1.09000 * 109.46869 * 180.02562 * 1 2 3 28 28 H 1.07994 * 120.79141 * 0.02562 * 5 4 2 29 29 H 1.07998 * 120.41868 * 180.21671 * 6 5 4 30 30 H 1.08001 * 119.61881 * 179.74331 * 7 6 5 31 31 H 1.07994 * 119.61468 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.47070 * 191.11714 * 11 10 2 33 33 H 1.08994 * 109.47178 * 311.12274 * 11 10 2 34 34 H 1.08998 * 109.46570 * 71.11828 * 11 10 2 35 35 H 1.08997 * 109.47419 * 49.99460 * 12 10 2 36 36 H 1.09002 * 109.46645 * 289.99593 * 12 10 2 37 37 H 0.96991 * 120.00002 * 0.27684 * 15 13 12 38 38 H 1.09001 * 109.47616 * 299.99695 * 16 15 13 39 39 H 1.08997 * 109.47025 * 60.00512 * 16 15 13 40 40 H 0.97002 * 120.00320 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.2499 -0.7729 2.3738 6 6 1.7509 -1.4407 3.4804 7 6 3.0091 -2.0088 3.4116 8 7 3.7275 -1.9254 2.3091 9 6 3.2806 -1.3030 1.2356 10 7 2.0197 -0.6925 -1.1994 11 6 1.4422 -2.0394 -1.3024 12 6 1.7441 0.0925 -2.4100 13 6 2.4681 -0.5195 -3.5814 14 8 3.1474 -1.5118 -3.4232 15 7 2.3568 0.0328 -4.8058 16 6 3.0560 -0.5657 -5.9456 17 6 2.7691 0.2369 -7.1884 18 1 2.1304 1.1060 -7.1346 19 6 3.3231 -0.1379 -8.3941 20 7 4.1014 -1.1960 -8.4596 21 14 2.9683 0.8573 -9.9347 22 1 2.0716 1.9915 -9.5956 23 1 4.2418 1.3825 -10.4890 24 1 2.3096 -0.0106 -10.9437 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2718 -0.3157 2.4000 29 1 1.1674 -1.5121 4.3864 30 1 3.4084 -2.5272 4.2708 31 1 3.8976 -1.2556 0.3505 32 1 1.9634 -2.5998 -2.0784 33 1 1.5494 -2.5546 -0.3479 34 1 0.3852 -1.9628 -1.5573 35 1 2.0879 1.1166 -2.2651 36 1 0.6718 0.0935 -2.6060 37 1 1.8138 0.8265 -4.9322 38 1 4.1290 -0.5669 -5.7539 39 1 2.7108 -1.5900 -6.0864 40 1 4.4909 -1.4599 -9.3079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772255895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -16.835305 kcal Electronic energy + Delta-G solvation = -21019.374924 eV Core-core repulsion = 17833.319300 eV Total energy + Delta-G solvation = -3186.055624 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.44714 -40.53006 -38.50387 -36.07648 -34.32759 -34.00601 -32.49629 -30.36356 -30.02393 -28.39726 -26.70680 -24.94267 -24.13299 -23.77559 -21.42377 -20.87972 -18.98934 -18.12829 -17.63987 -17.28503 -17.05982 -16.63882 -16.51769 -16.08377 -15.80575 -15.18094 -14.97085 -14.63505 -14.39174 -14.31863 -14.08988 -13.95164 -13.88660 -13.32765 -12.96284 -12.86916 -12.80336 -12.75226 -12.47176 -12.33411 -12.20397 -11.92949 -11.44247 -10.80459 -10.70339 -10.64138 -10.32300 -9.82522 -9.77471 -9.21852 -8.28428 -6.44927 0.23405 0.41902 1.43438 1.44672 1.58029 1.85123 2.27769 2.46293 2.92905 3.06592 3.09555 3.54522 3.84133 3.95587 4.02440 4.13399 4.15352 4.25604 4.32752 4.36377 4.45345 4.50996 4.61626 4.65927 4.89997 4.92656 4.98309 5.12330 5.14079 5.22626 5.26497 5.31202 5.37123 5.51809 5.72799 5.85097 5.87130 5.94723 6.13500 6.67351 6.99568 7.13353 7.25124 7.58893 8.84014 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.043987 B = 0.003017 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.399407 B = 9278.380636 C = 9670.990705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 H 0.110 0.890 4 C -0.130 4.130 5 C -0.073 4.073 6 C -0.168 4.168 7 C 0.075 3.925 8 N -0.524 5.524 9 C 0.100 3.900 10 N -0.534 5.534 11 C 0.031 3.969 12 C 0.051 3.949 13 C 0.492 3.508 14 O -0.586 6.586 15 N -0.710 5.710 16 C 0.269 3.731 17 C -0.553 4.553 18 H 0.085 0.915 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.985 3.015 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.165 0.835 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.139 0.861 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.408 0.592 38 H -0.016 1.016 39 H -0.015 1.015 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.300 6.196 22.887 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.017 3.983 3 H 0.128 0.872 4 C -0.132 4.132 5 C -0.099 4.099 6 C -0.188 4.188 7 C -0.081 4.081 8 N -0.233 5.233 9 C -0.056 4.056 10 N -0.258 5.258 11 C -0.117 4.117 12 C -0.080 4.080 13 C 0.279 3.721 14 O -0.466 6.466 15 N -0.361 5.361 16 C 0.146 3.854 17 C -0.591 4.591 18 H 0.103 0.897 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.808 3.192 22 H -0.174 1.174 23 H -0.206 1.206 24 H -0.205 1.205 25 H 0.108 0.892 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.183 0.817 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.157 0.843 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.148 0.852 36 H 0.109 0.891 37 H 0.244 0.756 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.364 4.951 22.889 25.609 hybrid contribution -1.232 0.470 -1.275 1.834 sum -11.596 5.421 21.614 25.120 Atomic orbital electron populations 1.22516 0.94509 1.02888 1.04203 1.20627 0.94408 0.97512 0.85715 0.87197 1.20858 0.95470 1.00299 0.96622 1.21897 1.00332 0.96235 0.91439 1.22471 0.97037 0.98617 1.00651 1.23270 0.92229 0.96861 0.95764 1.67717 1.37633 1.16949 1.01019 1.22643 0.94476 0.92945 0.95523 1.61669 1.59920 1.02772 1.01424 1.22329 0.97220 0.90365 1.01761 1.21972 0.99726 0.98920 0.87338 1.21419 0.81678 0.84113 0.84857 1.90628 1.42762 1.28011 1.85222 1.46163 1.50540 1.31546 1.07852 1.18477 0.90460 0.92681 0.83817 1.21664 1.31341 1.13262 0.92803 0.89674 1.26090 0.94208 0.96232 1.03271 1.70153 1.32720 1.26790 1.27472 0.85111 0.78223 0.78485 0.77389 1.17440 1.20583 1.20535 0.89199 0.91055 0.92466 0.81740 0.81527 0.81050 0.84316 0.93045 0.91976 0.94194 0.85202 0.89097 0.75617 0.99825 0.99747 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 7.66 71.98 0.55 -1.66 16 2 C 0.13 2.22 2.74 44.17 0.12 2.34 16 3 H 0.11 1.67 7.94 -2.39 -0.02 1.66 16 4 C -0.13 -2.58 4.45 -19.77 -0.09 -2.67 16 5 C -0.07 -1.03 9.24 22.47 0.21 -0.83 16 6 C -0.17 -2.28 10.11 22.36 0.23 -2.06 16 7 C 0.08 1.42 11.18 84.69 0.95 2.37 16 8 N -0.52 -14.07 10.36 -195.84 -2.03 -16.10 16 9 C 0.10 2.68 9.83 84.67 0.83 3.51 16 10 N -0.53 -13.69 3.58 -906.05 -3.24 -16.93 16 11 C 0.03 0.87 7.98 127.69 1.02 1.89 16 12 C 0.05 1.27 5.01 85.56 0.43 1.70 16 13 C 0.49 19.26 7.59 87.66 0.67 19.93 16 14 O -0.59 -29.08 14.31 -3.04 -0.04 -29.12 16 15 N -0.71 -29.39 5.55 -466.78 -2.59 -31.98 16 16 C 0.27 14.81 5.43 85.63 0.46 15.27 16 17 C -0.55 -29.99 9.28 25.60 0.24 -29.76 16 18 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 21 Si 0.98 42.31 29.54 68.60 2.03 44.33 16 22 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 25 H 0.09 0.66 6.61 -2.39 -0.02 0.64 16 26 H 0.07 0.79 6.90 -2.39 -0.02 0.78 16 27 H 0.06 0.80 6.58 -2.39 -0.02 0.79 16 28 H 0.17 1.27 6.19 -2.91 -0.02 1.25 16 29 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.14 4.36 7.55 -2.91 -0.02 4.33 16 32 H 0.05 1.90 6.04 -2.39 -0.01 1.88 16 33 H 0.06 1.67 6.59 -2.39 -0.02 1.66 16 34 H 0.04 0.95 6.82 -2.39 -0.02 0.94 16 35 H 0.13 2.49 7.94 -2.39 -0.02 2.47 16 36 H 0.09 1.77 6.97 -2.39 -0.02 1.76 16 37 H 0.41 13.58 8.32 -92.71 -0.77 12.81 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -77.21 326.66 0.76 -76.45 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.28 Total: 19.31 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 6.07 Total: 10.57 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -7.58 Total: -121.53 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.04 Total: -29.12 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -77.21 0.76 -76.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772255895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.610 kcal (2) G-P(sol) polarization free energy of solvation -77.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds