Wall clock time and date at job start Mon Mar 30 2020 02:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47043 * 2 1 4 4 N 1.46500 * 109.46922 * 240.00062 * 2 1 3 5 5 C 1.34781 * 120.00102 * 85.00204 * 4 2 1 6 6 O 1.21586 * 119.99890 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99985 * 180.02562 * 5 4 2 8 8 C 1.46494 * 119.99691 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47277 * 178.28528 * 8 7 5 10 10 C 1.50707 * 115.54854 * 65.13771 * 9 8 7 11 11 H 1.08000 * 120.00024 * 265.41171 * 10 9 8 12 12 C 1.37875 * 119.99674 * 85.41068 * 10 9 8 13 13 N 1.31522 * 120.00069 * 353.55071 * 12 10 9 14 14 Si 1.86796 * 120.00172 * 173.55543 * 12 10 9 15 15 H 1.48504 * 109.47084 * 89.99833 * 14 12 10 16 16 H 1.48498 * 109.47439 * 209.99862 * 14 12 10 17 17 H 1.48503 * 109.47153 * 330.00163 * 14 12 10 18 18 C 1.53005 * 117.49839 * 279.47785 * 9 8 7 19 19 C 1.52999 * 117.50299 * 210.81548 * 9 8 7 20 20 C 1.50702 * 109.47020 * 120.00226 * 2 1 3 21 21 C 1.34852 * 125.89182 * 85.04300 * 20 2 1 22 22 C 1.40891 * 107.41504 * 179.72931 * 21 20 2 23 23 C 1.34855 * 107.41690 * 0.38113 * 22 21 20 24 24 N 1.36339 * 108.21874 * 359.61936 * 23 22 21 25 25 H 0.96994 * 125.63925 * 180.22554 * 24 23 22 26 26 H 1.09003 * 109.46985 * 299.99667 * 1 2 3 27 27 H 1.09003 * 109.47136 * 59.99695 * 1 2 3 28 28 H 1.09000 * 109.47043 * 180.02562 * 1 2 3 29 29 H 0.96997 * 120.00282 * 264.99908 * 4 2 1 30 30 H 0.97000 * 119.99882 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47202 * 298.28545 * 8 7 5 32 32 H 1.09003 * 109.47252 * 58.28861 * 8 7 5 33 33 H 0.96992 * 119.99743 * 185.07084 * 13 12 10 34 34 H 1.08994 * 117.49681 * 359.97438 * 18 9 8 35 35 H 1.08998 * 117.50146 * 145.01692 * 18 9 8 36 36 H 1.08996 * 117.49739 * 214.97818 * 19 9 8 37 37 H 1.08997 * 117.49764 * 359.97032 * 19 9 8 38 38 H 1.07998 * 126.28720 * 359.97438 * 21 20 2 39 39 H 1.07993 * 126.28770 * 180.23437 * 22 21 20 40 40 H 1.07999 * 125.88539 * 179.88307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8575 1.1614 -2.4119 7 7 2.5958 -0.6537 -3.4578 8 6 2.7352 0.0770 -4.7198 9 6 3.2994 -0.8583 -5.7911 10 6 2.4097 -2.0102 -6.1822 11 1 2.5317 -2.9723 -5.7070 12 6 1.4400 -1.8357 -7.1467 13 7 1.2056 -0.6368 -7.6342 14 14 0.4590 -3.3018 -7.7610 15 1 -0.7559 -3.4703 -6.9238 16 1 0.0594 -3.0737 -9.1729 17 1 1.2936 -4.5271 -7.6745 18 6 4.8101 -1.1003 -5.7932 19 6 4.1714 -0.2366 -6.8838 20 6 2.0324 -0.7105 1.2305 21 6 2.2069 -2.0415 1.3590 22 6 2.6946 -2.2792 2.6592 23 6 2.7915 -1.0852 3.2786 24 7 2.3896 -0.1183 2.4055 25 1 2.3620 0.8336 2.5898 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.2490 -1.6317 -1.1527 30 1 2.8264 -1.5949 -3.4142 31 1 1.7592 0.4451 -5.0362 32 1 3.4130 0.9190 -4.5792 33 1 0.4752 -0.5012 -8.2577 34 1 5.4021 -0.5928 -5.0316 35 1 5.1606 -2.0924 -6.0779 36 1 4.1019 -0.6608 -7.8853 37 1 4.3428 0.8389 -6.8396 38 1 2.0126 -2.7875 0.6027 39 1 2.9428 -3.2411 3.0828 40 1 3.1331 -0.9226 4.2901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797504019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:10 Heat of formation + Delta-G solvation = 15.332645 kcal Electronic energy + Delta-G solvation = -21181.703129 eV Core-core repulsion = 17997.042412 eV Total energy + Delta-G solvation = -3184.660717 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12704 -40.85678 -38.58967 -36.48646 -34.94492 -33.94634 -32.01662 -31.62166 -28.89637 -27.98077 -26.95517 -24.14485 -22.94908 -22.03011 -21.44616 -21.24770 -20.58681 -19.66176 -18.51084 -17.75038 -16.94969 -16.65172 -16.35991 -15.83006 -15.51195 -15.29500 -15.06520 -14.56436 -14.42818 -14.30572 -13.99647 -13.56023 -13.48600 -13.32847 -13.09508 -12.89543 -12.89006 -12.82102 -12.32819 -12.06477 -12.02337 -11.50186 -11.27751 -10.82805 -10.44068 -10.33600 -10.03367 -9.74295 -9.61555 -8.95871 -8.07256 -6.20158 1.27262 1.43736 1.46483 1.54717 1.77951 2.13120 2.24944 2.44508 2.56705 3.20951 3.36027 3.62928 3.74666 4.12892 4.26800 4.29172 4.48355 4.58668 4.61203 4.67209 4.69314 4.76507 4.76827 4.91113 5.01485 5.05391 5.20967 5.29315 5.37141 5.38668 5.55108 5.61311 5.63867 5.73580 5.81226 6.09350 6.13973 6.22409 6.39572 6.77855 6.86555 7.23326 7.49091 7.68690 9.00301 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.003890 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.922126 B = 7197.059432 C = 7483.233194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.236 3.764 3 H 0.075 0.925 4 N -0.725 5.725 5 C 0.700 3.300 6 O -0.643 6.643 7 N -0.715 5.715 8 C 0.200 3.800 9 C 0.006 3.994 10 C -0.503 4.503 11 H 0.064 0.936 12 C 0.025 3.975 13 N -0.908 5.908 14 Si 0.949 3.051 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.263 1.263 18 C -0.176 4.176 19 C -0.159 4.159 20 C -0.003 4.003 21 C -0.200 4.200 22 C -0.223 4.223 23 C -0.001 4.001 24 N -0.548 5.548 25 H 0.425 0.575 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.408 0.592 30 H 0.406 0.594 31 H 0.027 0.973 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -2.409 20.449 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.130 3.870 3 H 0.093 0.907 4 N -0.382 5.382 5 C 0.399 3.601 6 O -0.526 6.526 7 N -0.368 5.368 8 C 0.075 3.925 9 C 0.005 3.995 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.776 3.224 15 H -0.207 1.207 16 H -0.216 1.216 17 H -0.188 1.188 18 C -0.213 4.213 19 C -0.197 4.197 20 C -0.117 4.117 21 C -0.226 4.226 22 C -0.247 4.247 23 C -0.133 4.133 24 N -0.144 5.144 25 H 0.263 0.737 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.245 0.755 30 H 0.242 0.758 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.492 -1.100 20.225 20.407 hybrid contribution -0.609 -0.820 -0.789 1.291 sum 1.884 -1.921 19.436 19.621 Atomic orbital electron populations 1.22118 0.93882 1.02835 1.02074 1.18781 0.93799 0.94870 0.79565 0.90669 1.44931 1.71675 1.14055 1.07547 1.16109 0.78203 0.84677 0.81070 1.90834 1.59594 1.16554 1.85571 1.44909 1.69297 1.14308 1.08240 1.20399 0.98207 0.92364 0.81520 1.19058 0.88830 0.96600 0.94980 1.20651 1.17205 0.95714 1.20540 0.91814 1.25695 0.98165 0.97662 0.96040 1.70106 1.29897 1.22609 1.31916 0.85691 0.78966 0.80545 0.77238 1.20660 1.21615 1.18762 1.23001 0.96674 1.00300 1.01366 1.22433 1.06130 0.96635 0.94485 1.20028 1.09383 0.93322 0.88962 1.20865 1.08495 0.94136 0.99081 1.21186 1.09529 0.98708 0.95304 1.22391 1.05832 0.87570 0.97479 1.41929 1.51669 1.10118 1.10677 0.73682 0.90074 0.93913 0.91510 0.75504 0.75847 0.95503 0.94952 0.93268 0.89430 0.89533 0.91742 0.91130 0.84564 0.83481 0.78566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.47 71.98 0.68 -2.96 16 2 C 0.24 5.97 3.08 44.25 0.14 6.10 16 3 H 0.08 2.11 7.58 -2.39 -0.02 2.09 16 4 N -0.73 -20.86 5.06 -461.39 -2.33 -23.20 16 5 C 0.70 27.00 8.53 179.05 1.53 28.53 16 6 O -0.64 -29.94 16.01 -3.99 -0.06 -30.01 16 7 N -0.71 -28.10 5.48 -478.54 -2.62 -30.73 16 8 C 0.20 9.34 5.50 86.38 0.48 9.82 16 9 C 0.01 0.29 1.38 -52.92 -0.07 0.21 16 10 C -0.50 -25.68 8.63 25.60 0.22 -25.46 16 11 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 12 C 0.03 1.33 5.39 84.65 0.46 1.79 16 13 N -0.91 -51.57 12.91 21.45 0.28 -51.29 16 14 Si 0.95 42.29 29.55 68.60 2.03 44.32 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 18 C -0.18 -7.02 9.96 30.62 0.30 -6.72 16 19 C -0.16 -7.25 9.42 30.62 0.29 -6.96 16 20 C 0.00 -0.07 6.22 41.08 0.26 0.18 16 21 C -0.20 -4.19 10.00 22.14 0.22 -3.97 16 22 C -0.22 -3.99 10.86 22.14 0.24 -3.75 16 23 C 0.00 -0.02 11.94 83.22 0.99 0.98 16 24 N -0.55 -8.71 6.07 -182.76 -1.11 -9.82 16 25 H 0.42 4.63 8.96 -92.71 -0.83 3.80 16 26 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.41 9.82 7.35 -92.71 -0.68 9.14 16 30 H 0.41 14.20 8.38 -92.71 -0.78 13.43 16 31 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 33 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 34 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.14 2.66 7.42 -2.91 -0.02 2.64 16 39 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 40 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -67.12 341.94 0.68 -66.44 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -1.22 Total: 36.48 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 5.73 Total: -2.20 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -5.79 Total: -115.04 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.06 Total: -30.01 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -67.12 0.68 -66.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797504019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.778 kcal (2) G-P(sol) polarization free energy of solvation -67.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds