Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46738 * 2 1 4 4 C 1.52997 * 109.46830 * 119.99669 * 2 1 3 5 5 C 1.53010 * 109.46872 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47255 * 300.00405 * 5 4 2 7 7 C 1.53000 * 109.47097 * 59.99664 * 6 5 4 8 8 C 1.52997 * 109.47375 * 300.00064 * 7 6 5 9 9 H 1.08995 * 109.47553 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47261 * 300.00250 * 8 7 6 11 11 O 1.21310 * 120.00282 * 120.00059 * 10 8 7 12 12 N 1.34781 * 119.99817 * 299.99553 * 10 8 7 13 13 C 1.40593 * 119.99726 * 179.97438 * 12 10 8 14 14 C 1.40644 * 126.08558 * 359.70060 * 13 12 10 15 15 N 1.30906 * 108.39107 * 179.81173 * 14 13 12 16 16 N 1.40072 * 108.40263 * 0.44100 * 15 14 13 17 17 C 1.37332 * 126.06847 * 179.73929 * 16 15 14 18 18 H 1.07996 * 119.99933 * 174.09092 * 17 16 15 19 19 C 1.38984 * 119.99859 * 354.09404 * 17 16 15 20 20 N 1.31291 * 120.00168 * 5.93048 * 19 17 16 21 21 Si 1.86803 * 119.99852 * 185.93048 * 19 17 16 22 22 H 1.48498 * 109.47214 * 94.97761 * 21 19 17 23 23 H 1.48495 * 109.47287 * 214.98074 * 21 19 17 24 24 H 1.48510 * 109.47098 * 334.97937 * 21 19 17 25 25 C 1.35678 * 126.08000 * 179.97438 * 13 12 10 26 26 H 1.08998 * 109.47736 * 300.00090 * 1 2 3 27 27 H 1.09000 * 109.47120 * 60.00223 * 1 2 3 28 28 H 1.09008 * 109.47190 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46932 * 60.01083 * 4 2 1 30 30 H 1.08998 * 109.47612 * 300.00313 * 4 2 1 31 31 H 1.08998 * 109.46998 * 60.00147 * 5 4 2 32 32 H 1.09000 * 109.47162 * 180.02562 * 5 4 2 33 33 H 1.08995 * 109.47216 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46913 * 300.00355 * 6 5 4 35 35 H 1.08998 * 109.47133 * 60.00272 * 7 6 5 36 36 H 1.08998 * 109.47198 * 180.02562 * 7 6 5 37 37 H 0.96993 * 119.99705 * 0.02562 * 12 10 8 38 38 H 1.08000 * 125.80754 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99924 * 180.02562 * 20 19 17 40 40 H 1.08000 * 126.24788 * 0.03167 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 1 1.6772 -0.2067 -2.1389 10 6 1.5388 -2.1418 -1.2495 11 8 0.8412 -2.5390 -0.3399 12 7 1.8649 -2.9714 -2.2604 13 6 1.3971 -4.2973 -2.2604 14 6 0.5906 -4.8911 -1.2730 15 7 0.3582 -6.1316 -1.6206 16 7 1.0129 -6.3810 -2.8336 17 6 1.0146 -7.5693 -3.5220 18 1 1.4737 -7.6273 -4.4978 19 6 0.4254 -8.6971 -2.9630 20 7 -0.2336 -8.6010 -1.8316 21 14 0.5713 -10.3498 -3.8215 22 1 1.7188 -11.1026 -3.2543 23 1 -0.6786 -11.1253 -3.6182 24 1 0.7899 -10.1352 -5.2746 25 6 1.6478 -5.2331 -3.2103 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2492 30 1 1.6765 -0.2074 2.1393 31 1 3.9329 0.3072 1.2498 32 1 3.9333 -1.2348 2.1394 33 1 5.1705 -1.4407 0.0004 34 1 3.7176 -2.4692 0.0001 35 1 3.9335 0.3075 -1.2487 36 1 3.9339 -1.2341 -2.1389 37 1 2.4228 -2.6539 -2.9875 38 1 0.2230 -4.4055 -0.3811 39 1 -0.6445 -9.3883 -1.4413 40 1 2.2420 -5.0951 -4.1015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819201879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = 26.582572 kcal Electronic energy + Delta-G solvation = -22012.721819 eV Core-core repulsion = 18828.548936 eV Total energy + Delta-G solvation = -3184.172884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52278 -39.27382 -36.87554 -34.29611 -33.21577 -32.27452 -31.02234 -30.13038 -27.70079 -26.34363 -24.85846 -23.24305 -21.36012 -21.12444 -20.78589 -19.38863 -18.98315 -17.36084 -16.00075 -15.67809 -15.39775 -15.25926 -14.69526 -14.19526 -14.04760 -13.71752 -13.54035 -13.20567 -12.97960 -12.88419 -12.29371 -12.07860 -11.86429 -11.64860 -11.43118 -11.35980 -11.33060 -11.21203 -10.92778 -10.73078 -10.55690 -10.50055 -10.04422 -9.95976 -9.89222 -9.10798 -8.81735 -8.67172 -8.01962 -6.64128 -6.53691 -4.19896 2.89092 3.06138 3.08521 3.11546 3.67931 3.72363 3.92408 4.46420 4.64525 4.72579 4.81835 4.93975 5.03770 5.18781 5.23580 5.40298 5.45481 5.50274 5.57321 5.64731 5.81434 5.89738 5.95539 6.05350 6.06838 6.24771 6.27428 6.31731 6.35153 6.42181 6.51904 6.67734 6.78626 6.96479 7.01419 7.20966 7.32715 7.89617 8.25009 8.35626 8.68783 8.97183 9.41724 9.71155 10.42689 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.003986 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.130702 B = 7022.475454 C = 7190.297238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.063 4.063 3 H 0.065 0.935 4 C -0.131 4.131 5 C -0.116 4.116 6 C -0.124 4.124 7 C -0.109 4.109 8 C -0.102 4.102 9 H 0.090 0.910 10 C 0.508 3.492 11 O -0.528 6.528 12 N -0.626 5.626 13 C -0.057 4.057 14 C -0.033 4.033 15 N -0.262 5.262 16 N -0.144 5.144 17 C -0.325 4.325 18 H 0.115 0.885 19 C 0.047 3.953 20 N -0.771 5.771 21 Si 0.933 3.067 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.264 1.264 25 C -0.085 4.085 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.176 0.824 39 H 0.274 0.726 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.896 14.230 0.152 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.082 4.082 3 H 0.084 0.916 4 C -0.168 4.168 5 C -0.154 4.154 6 C -0.162 4.162 7 C -0.146 4.146 8 C -0.124 4.124 9 H 0.108 0.892 10 C 0.295 3.705 11 O -0.406 6.406 12 N -0.268 5.268 13 C -0.162 4.162 14 C -0.209 4.209 15 N -0.093 5.093 16 N 0.088 4.912 17 C -0.457 4.457 18 H 0.133 0.867 19 C -0.170 4.170 20 N -0.397 5.397 21 Si 0.757 3.243 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.236 4.236 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.227 0.773 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.667 12.711 1.279 13.975 hybrid contribution 0.879 0.310 -1.164 1.491 sum 6.546 13.021 0.115 14.574 Atomic orbital electron populations 1.22101 0.94867 1.04655 1.00271 1.20816 0.96096 0.97702 0.93553 0.91642 1.21879 0.94515 1.03967 0.96411 1.21515 0.96551 0.99763 0.97554 1.21571 0.99904 1.00252 0.94449 1.21519 0.93274 1.01214 0.98626 1.21375 0.96650 0.93865 1.00488 0.89215 1.20266 0.81211 0.86967 0.82068 1.90448 1.38143 1.76395 1.35565 1.42613 1.50494 1.09814 1.23913 1.17299 1.12737 0.85059 1.01149 1.24094 1.03041 0.92753 1.01021 1.78235 1.18844 1.14201 0.98024 1.44526 1.26737 1.06566 1.13386 1.19857 1.39697 0.83915 1.02236 0.86714 1.25621 0.95071 1.00309 0.95974 1.70224 1.24059 1.30244 1.15200 0.85836 0.78424 0.80404 0.79618 1.19671 1.20120 1.18815 1.21270 1.10794 0.88729 1.02805 0.93402 0.93825 0.89236 0.88396 0.92775 0.92712 0.92355 0.92146 0.91371 0.91230 0.91665 0.77295 0.80741 0.91535 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.90 37.16 0.33 -1.79 16 2 C -0.06 -0.76 2.46 -90.62 -0.22 -0.99 16 3 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 4 C -0.13 -1.70 4.93 -26.73 -0.13 -1.84 16 5 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 6 C -0.12 -1.48 5.70 -26.73 -0.15 -1.63 16 7 C -0.11 -1.13 5.36 -26.73 -0.14 -1.27 16 8 C -0.10 -1.25 2.55 -91.77 -0.23 -1.48 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.51 8.49 5.32 -10.99 -0.06 8.43 16 11 O -0.53 -10.50 8.50 5.53 0.05 -10.45 16 12 N -0.63 -10.97 5.36 -10.00 -0.05 -11.02 16 13 C -0.06 -1.30 6.90 -83.84 -0.58 -1.88 16 14 C -0.03 -0.88 10.85 -17.04 -0.18 -1.06 16 15 N -0.26 -7.66 10.42 30.80 0.32 -7.34 16 16 N -0.14 -3.99 3.74 -11.41 -0.04 -4.03 16 17 C -0.32 -8.68 10.24 -14.81 -0.15 -8.83 16 18 H 0.12 2.75 7.84 -52.49 -0.41 2.33 16 19 C 0.05 1.23 5.50 -17.51 -0.10 1.13 16 20 N -0.77 -21.72 11.84 55.49 0.66 -21.06 16 21 Si 0.93 19.07 29.56 -169.99 -5.02 14.05 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 25 C -0.09 -2.01 11.49 -16.40 -0.19 -2.20 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.46 5.51 -51.92 -0.29 1.17 16 29 H 0.10 1.61 5.51 -51.93 -0.29 1.32 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.02 7.22 -51.93 -0.37 0.65 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 37 H 0.39 5.47 8.24 -40.82 -0.34 5.13 16 38 H 0.18 4.52 5.92 -52.49 -0.31 4.21 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -31.76 314.29 -7.09 -38.85 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -5.76 Total: 11.17 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -1.97 Total: -14.91 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.88 Total: -43.45 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.05 Total: -10.45 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.76 -7.09 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819201879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.432 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds