Wall clock time and date at job start Mon Mar 30 2020 02:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46738 * 2 1 4 4 C 1.52997 * 109.46830 * 119.99669 * 2 1 3 5 5 C 1.53010 * 109.46872 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47255 * 300.00405 * 5 4 2 7 7 C 1.53000 * 109.47097 * 59.99664 * 6 5 4 8 8 C 1.52997 * 109.47375 * 300.00064 * 7 6 5 9 9 H 1.08995 * 109.47553 * 179.97438 * 8 7 6 10 10 C 1.50695 * 109.47261 * 300.00250 * 8 7 6 11 11 O 1.21310 * 120.00282 * 120.00059 * 10 8 7 12 12 N 1.34781 * 119.99817 * 299.99553 * 10 8 7 13 13 C 1.40593 * 119.99726 * 179.97438 * 12 10 8 14 14 C 1.40644 * 126.08558 * 359.70060 * 13 12 10 15 15 N 1.30906 * 108.39107 * 179.81173 * 14 13 12 16 16 N 1.40072 * 108.40263 * 0.44100 * 15 14 13 17 17 C 1.37332 * 126.06847 * 179.73929 * 16 15 14 18 18 H 1.07996 * 119.99933 * 174.09092 * 17 16 15 19 19 C 1.38984 * 119.99859 * 354.09404 * 17 16 15 20 20 N 1.31291 * 120.00168 * 5.93048 * 19 17 16 21 21 Si 1.86803 * 119.99852 * 185.93048 * 19 17 16 22 22 H 1.48498 * 109.47214 * 94.97761 * 21 19 17 23 23 H 1.48495 * 109.47287 * 214.98074 * 21 19 17 24 24 H 1.48510 * 109.47098 * 334.97937 * 21 19 17 25 25 C 1.35678 * 126.08000 * 179.97438 * 13 12 10 26 26 H 1.08998 * 109.47736 * 300.00090 * 1 2 3 27 27 H 1.09000 * 109.47120 * 60.00223 * 1 2 3 28 28 H 1.09008 * 109.47190 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46932 * 60.01083 * 4 2 1 30 30 H 1.08998 * 109.47612 * 300.00313 * 4 2 1 31 31 H 1.08998 * 109.46998 * 60.00147 * 5 4 2 32 32 H 1.09000 * 109.47162 * 180.02562 * 5 4 2 33 33 H 1.08995 * 109.47216 * 179.97438 * 6 5 4 34 34 H 1.08998 * 109.46913 * 300.00355 * 6 5 4 35 35 H 1.08998 * 109.47133 * 60.00272 * 7 6 5 36 36 H 1.08998 * 109.47198 * 180.02562 * 7 6 5 37 37 H 0.96993 * 119.99705 * 0.02562 * 12 10 8 38 38 H 1.08000 * 125.80754 * 359.97438 * 14 13 12 39 39 H 0.97001 * 119.99924 * 180.02562 * 20 19 17 40 40 H 1.08000 * 126.24788 * 0.03167 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0806 -1.4415 0.0004 7 6 3.5705 -0.7203 -1.2489 8 6 2.0406 -0.7209 -1.2492 9 1 1.6772 -0.2067 -2.1389 10 6 1.5388 -2.1418 -1.2495 11 8 0.8412 -2.5390 -0.3399 12 7 1.8649 -2.9714 -2.2604 13 6 1.3971 -4.2973 -2.2604 14 6 0.5906 -4.8911 -1.2730 15 7 0.3582 -6.1316 -1.6206 16 7 1.0129 -6.3810 -2.8336 17 6 1.0146 -7.5693 -3.5220 18 1 1.4737 -7.6273 -4.4978 19 6 0.4254 -8.6971 -2.9630 20 7 -0.2336 -8.6010 -1.8316 21 14 0.5713 -10.3498 -3.8215 22 1 1.7188 -11.1026 -3.2543 23 1 -0.6786 -11.1253 -3.6182 24 1 0.7899 -10.1352 -5.2746 25 6 1.6478 -5.2331 -3.2103 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6767 -1.7489 1.2492 30 1 1.6765 -0.2074 2.1393 31 1 3.9329 0.3072 1.2498 32 1 3.9333 -1.2348 2.1394 33 1 5.1705 -1.4407 0.0004 34 1 3.7176 -2.4692 0.0001 35 1 3.9335 0.3075 -1.2487 36 1 3.9339 -1.2341 -2.1389 37 1 2.4228 -2.6539 -2.9875 38 1 0.2230 -4.4055 -0.3811 39 1 -0.6445 -9.3883 -1.4413 40 1 2.2420 -5.0951 -4.1015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819201879.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:03 Heat of formation + Delta-G solvation = 6.341856 kcal Electronic energy + Delta-G solvation = -22013.599523 eV Core-core repulsion = 18828.548936 eV Total energy + Delta-G solvation = -3185.050587 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.93393 -40.99351 -38.12586 -35.91075 -35.01135 -33.28571 -32.37188 -31.86697 -29.46922 -27.48587 -26.69414 -24.37420 -22.81498 -22.47451 -22.07117 -21.15956 -20.34538 -19.13540 -17.48319 -17.19679 -16.97904 -16.58390 -15.91009 -15.73194 -15.32275 -15.06457 -14.93133 -14.76217 -14.49805 -14.07034 -13.55374 -13.36538 -13.25810 -13.05633 -12.91777 -12.85503 -12.75684 -12.39811 -12.30876 -12.06762 -11.78429 -11.71794 -11.42657 -10.96495 -10.92697 -10.85206 -10.78684 -10.08402 -10.06920 -8.47637 -8.45227 -6.22801 1.25523 1.39395 1.57558 1.60337 1.92428 2.08670 2.40215 2.59263 2.96631 3.08947 3.70763 3.83392 3.87574 4.17343 4.29455 4.36977 4.45533 4.52960 4.59024 4.64645 4.66054 4.74496 4.88280 4.96388 5.01863 5.04871 5.11309 5.15066 5.17324 5.29035 5.31441 5.37036 5.40000 5.47972 5.52436 5.60041 5.85174 5.98458 6.36931 6.76755 6.88495 7.47957 7.57453 7.72966 8.53259 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036161 B = 0.003986 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.130702 B = 7022.475454 C = 7190.297238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.061 4.061 3 H 0.101 0.899 4 C -0.132 4.132 5 C -0.113 4.113 6 C -0.126 4.126 7 C -0.104 4.104 8 C -0.093 4.093 9 H 0.119 0.881 10 C 0.503 3.497 11 O -0.561 6.561 12 N -0.622 5.622 13 C -0.038 4.038 14 C -0.060 4.060 15 N -0.313 5.313 16 N -0.170 5.170 17 C -0.356 4.356 18 H 0.139 0.861 19 C -0.006 4.006 20 N -0.827 5.827 21 Si 1.019 2.981 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.242 1.242 25 C -0.085 4.085 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.415 0.585 38 H 0.166 0.834 39 H 0.275 0.725 40 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.069 16.472 -1.985 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.080 4.080 3 H 0.119 0.881 4 C -0.170 4.170 5 C -0.151 4.151 6 C -0.164 4.164 7 C -0.141 4.141 8 C -0.114 4.114 9 H 0.137 0.863 10 C 0.292 3.708 11 O -0.440 6.440 12 N -0.267 5.267 13 C -0.144 4.144 14 C -0.235 4.235 15 N -0.145 5.145 16 N 0.060 4.940 17 C -0.487 4.487 18 H 0.157 0.843 19 C -0.217 4.217 20 N -0.455 5.455 21 Si 0.837 3.163 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.165 1.165 25 C -0.235 4.235 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.123 0.877 36 H 0.096 0.904 37 H 0.252 0.748 38 H 0.183 0.817 39 H 0.085 0.915 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 7.869 15.011 -0.878 16.971 hybrid contribution 0.208 -0.220 -0.405 0.506 sum 8.077 14.791 -1.283 16.902 Atomic orbital electron populations 1.22051 0.96048 1.02317 1.01406 1.20886 0.95117 0.99234 0.92761 0.88069 1.21821 0.95944 1.01603 0.97588 1.21506 0.95063 1.01280 0.97201 1.21582 1.00957 0.98109 0.95722 1.21575 0.91279 1.03203 0.98072 1.21468 0.98182 0.89997 1.01799 0.86307 1.21348 0.79996 0.88674 0.80785 1.90476 1.39375 1.77436 1.36745 1.42627 1.51057 1.07745 1.25299 1.17374 1.10503 0.87275 0.99263 1.24129 1.04666 0.92819 1.01910 1.78122 1.20790 1.15735 0.99893 1.44810 1.27814 1.07984 1.13362 1.20601 1.40480 0.84226 1.03423 0.84317 1.26867 0.93850 1.04582 0.96412 1.70410 1.25925 1.31558 1.17593 0.84590 0.78188 0.74247 0.79242 1.19200 1.20153 1.16509 1.22002 1.10063 0.87550 1.03860 0.92586 0.92411 0.93218 0.92755 0.92215 0.89795 0.93088 0.90394 0.95633 0.87691 0.90430 0.74813 0.81702 0.91492 0.79773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 8.90 71.98 0.64 -3.40 16 2 C -0.06 -1.32 2.46 -10.79 -0.03 -1.35 16 3 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 4 C -0.13 -3.35 4.93 30.60 0.15 -3.20 16 5 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 6 C -0.13 -2.73 5.70 30.59 0.17 -2.55 16 7 C -0.10 -1.72 5.36 30.59 0.16 -1.56 16 8 C -0.09 -1.99 2.55 -11.54 -0.03 -2.02 16 9 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 10 C 0.50 16.59 5.32 87.65 0.47 17.06 16 11 O -0.56 -23.43 8.50 -3.12 -0.03 -23.45 16 12 N -0.62 -21.17 5.36 -303.92 -1.63 -22.80 16 13 C -0.04 -1.76 6.90 37.73 0.26 -1.50 16 14 C -0.06 -3.32 10.85 85.42 0.93 -2.40 16 15 N -0.31 -19.30 10.42 -56.47 -0.59 -19.89 16 16 N -0.17 -9.64 3.74 -190.02 -0.71 -10.35 16 17 C -0.36 -19.24 10.24 84.01 0.86 -18.37 16 18 H 0.14 6.50 7.84 -2.91 -0.02 6.48 16 19 C -0.01 -0.31 5.50 84.95 0.47 0.16 16 20 N -0.83 -48.72 11.84 21.66 0.26 -48.46 16 21 Si 1.02 39.25 29.56 68.60 2.03 41.28 16 22 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 25 C -0.08 -3.98 11.49 83.38 0.96 -3.02 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.05 1.67 5.51 -2.38 -0.01 1.66 16 29 H 0.05 1.88 5.51 -2.39 -0.01 1.87 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.02 0.76 7.22 -2.39 -0.02 0.74 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.13 7.56 -2.39 -0.02 1.11 16 37 H 0.42 10.40 8.24 -92.71 -0.76 9.64 16 38 H 0.17 9.27 5.92 -2.91 -0.02 9.25 16 39 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.19 6.85 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -75.68 314.29 4.81 -70.87 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.29 Total: 37.14 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 5.19 Total: -24.33 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -2.67 Total: -101.51 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.03 Total: -23.45 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -75.68 4.81 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819201879.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.212 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds