Wall clock time and date at job start Mon Mar 30 2020 02:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47552 * 2 1 4 4 C 1.52998 * 109.47383 * 239.99614 * 2 1 3 5 5 C 1.52999 * 109.47311 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47404 * 59.99854 * 5 4 2 7 7 C 1.52998 * 109.47380 * 300.00331 * 6 5 4 8 8 C 1.52999 * 109.47122 * 59.99497 * 7 6 5 9 9 H 1.08998 * 109.46962 * 60.00484 * 8 7 6 10 10 C 1.50707 * 109.47100 * 180.02562 * 8 7 6 11 11 O 1.21303 * 119.99309 * 120.00196 * 10 8 7 12 12 N 1.34769 * 119.99951 * 300.00162 * 10 8 7 13 13 C 1.40594 * 119.99693 * 179.97438 * 12 10 8 14 14 C 1.40650 * 126.08395 * 359.97438 * 13 12 10 15 15 N 1.30905 * 108.38944 * 180.02562 * 14 13 12 16 16 N 1.40075 * 108.40615 * 359.97438 * 15 14 13 17 17 C 1.37323 * 126.06722 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00043 * 180.02562 * 17 16 15 19 19 C 1.38990 * 120.00330 * 0.02562 * 17 16 15 20 20 N 1.31299 * 119.99795 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47270 * 120.00135 * 21 19 17 24 24 H 1.48499 * 109.47211 * 240.00008 * 21 19 17 25 25 C 1.35685 * 126.08136 * 179.97438 * 13 12 10 26 26 H 1.09001 * 109.47277 * 300.00161 * 1 2 3 27 27 H 1.09004 * 109.47137 * 60.00389 * 1 2 3 28 28 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46992 * 300.00184 * 4 2 1 30 30 H 1.09004 * 109.46986 * 59.99905 * 4 2 1 31 31 H 1.09001 * 109.47205 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.46962 * 299.99859 * 5 4 2 33 33 H 1.08998 * 109.47057 * 60.00063 * 6 5 4 34 34 H 1.08998 * 109.47348 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46807 * 299.99885 * 7 6 5 36 36 H 1.08995 * 109.47523 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00453 * 0.02562 * 12 10 8 38 38 H 1.08002 * 125.80681 * 0.03201 * 14 13 12 39 39 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 40 40 H 1.07998 * 126.24416 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6758 -1.7490 1.2492 10 6 1.5371 -0.0105 2.4795 11 8 0.8401 0.9759 2.3676 12 7 1.8623 -0.4707 3.7037 13 6 1.3941 0.1930 4.8513 14 6 0.5834 1.3421 4.8709 15 7 0.3557 1.6657 6.1187 16 7 1.0087 0.7396 6.9420 17 6 1.0103 0.7388 8.3152 18 1 1.5499 -0.0260 8.8542 19 6 0.3175 1.7221 9.0117 20 7 -0.3389 2.6515 8.3565 21 14 0.3192 1.7204 10.8796 22 1 1.1267 0.5760 11.3729 23 1 0.9074 2.9907 11.3752 24 1 -1.0747 1.5938 11.3757 25 6 1.6439 -0.1613 6.1371 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.9334 -1.2354 -2.1390 32 1 3.9337 0.3057 -1.2487 33 1 3.7158 -2.4708 0.0003 34 1 5.1695 -1.4441 0.0004 35 1 3.9332 0.3055 1.2498 36 1 3.9328 -1.2358 2.1396 37 1 2.4200 -1.2593 3.7932 38 1 0.2118 1.8681 4.0038 39 1 -0.8220 3.3379 8.8426 40 1 2.2369 -1.0026 6.4639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819201882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:13 Heat of formation + Delta-G solvation = 20.797169 kcal Electronic energy + Delta-G solvation = -21533.712163 eV Core-core repulsion = 18349.288406 eV Total energy + Delta-G solvation = -3184.423758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.28129 -39.23538 -37.38759 -34.27317 -33.19117 -32.34902 -31.17088 -30.13196 -27.75246 -26.40704 -24.84708 -23.38229 -21.50469 -20.97369 -20.37522 -19.49930 -19.30956 -17.45139 -16.58503 -15.43414 -15.25580 -14.94600 -14.75792 -14.37879 -14.20636 -13.99452 -13.77215 -13.30221 -12.91149 -12.77324 -12.46193 -12.20550 -11.84346 -11.65252 -11.47135 -11.35790 -11.28988 -11.19196 -10.92104 -10.90907 -10.53373 -10.49464 -10.40896 -10.13485 -10.00107 -9.12566 -8.87538 -8.73200 -8.02054 -6.64458 -6.53093 -4.19622 2.88179 3.06472 3.07577 3.12374 3.66831 3.72002 3.91715 4.45628 4.56869 4.63217 4.68799 4.88984 5.04677 5.06050 5.13777 5.31713 5.35012 5.38303 5.44199 5.50449 5.72596 5.77598 5.89855 5.96234 5.99928 6.02641 6.10203 6.18440 6.25811 6.28905 6.49802 6.52469 6.69095 6.95622 7.01259 7.19842 7.30828 7.89612 8.24743 8.35112 8.68492 8.95777 9.41727 9.71211 10.43089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045471 B = 0.003529 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.632475 B = 7932.541370 C = 8360.400466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.067 4.067 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.097 4.097 9 H 0.091 0.909 10 C 0.502 3.498 11 O -0.532 6.532 12 N -0.626 5.626 13 C -0.058 4.058 14 C -0.034 4.034 15 N -0.261 5.261 16 N -0.144 5.144 17 C -0.324 4.324 18 H 0.116 0.884 19 C 0.046 3.954 20 N -0.771 5.771 21 Si 0.934 3.066 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.085 4.085 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.176 0.824 39 H 0.274 0.726 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 -8.773 -13.560 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.086 4.086 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.150 4.150 8 C -0.119 4.119 9 H 0.109 0.891 10 C 0.289 3.711 11 O -0.409 6.409 12 N -0.268 5.268 13 C -0.164 4.164 14 C -0.210 4.210 15 N -0.092 5.092 16 N 0.088 4.912 17 C -0.456 4.456 18 H 0.133 0.867 19 C -0.171 4.171 20 N -0.397 5.397 21 Si 0.758 3.242 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.236 4.236 26 H 0.107 0.893 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.193 0.807 39 H 0.084 0.916 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.831 -7.037 -12.809 15.735 hybrid contribution 0.775 -1.139 0.365 1.425 sum 6.606 -8.176 -12.444 16.290 Atomic orbital electron populations 1.22077 0.94692 1.01310 1.03612 1.20861 0.96293 0.99474 0.92004 0.90586 1.21633 0.95188 1.00636 0.97737 1.21562 0.95966 1.00842 0.97542 1.21521 1.00179 0.99323 0.94398 1.21542 0.93400 1.01749 0.98284 1.21338 0.96492 1.00547 0.93488 0.89118 1.20384 0.81460 0.85343 0.83932 1.90516 1.38059 1.26463 1.85883 1.42591 1.50504 1.29540 1.04146 1.17314 1.12567 1.01724 0.84779 1.24106 1.02882 0.97594 0.96380 1.78243 1.19374 1.12985 0.98594 1.44541 1.27041 1.14575 1.05054 1.19903 1.34151 1.14636 0.76890 0.86653 1.25636 0.95249 0.94964 1.01270 1.70231 1.22998 1.10269 1.36230 0.85770 0.78702 0.78963 0.80734 1.18724 1.19944 1.19941 1.21263 1.11037 1.01886 0.89429 0.89310 0.93388 0.93780 0.92093 0.91905 0.92222 0.91930 0.91896 0.91875 0.91282 0.91497 0.77223 0.80748 0.91573 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 8.87 37.15 0.33 -1.78 16 2 C -0.07 -0.82 1.89 -90.62 -0.17 -0.99 16 3 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 4 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 5 C -0.12 -1.03 5.92 -26.74 -0.16 -1.18 16 6 C -0.12 -0.97 5.92 -26.74 -0.16 -1.13 16 7 C -0.11 -1.16 5.10 -26.73 -0.14 -1.30 16 8 C -0.10 -1.20 2.06 -91.77 -0.19 -1.38 16 9 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.50 8.66 6.83 -10.99 -0.08 8.59 16 11 O -0.53 -11.12 10.81 5.54 0.06 -11.06 16 12 N -0.63 -11.16 5.36 -10.00 -0.05 -11.22 16 13 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 16 14 C -0.03 -0.91 10.85 -17.04 -0.18 -1.09 16 15 N -0.26 -7.69 10.40 30.80 0.32 -7.37 16 16 N -0.14 -4.01 3.74 -11.41 -0.04 -4.05 16 17 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 18 H 0.12 2.77 7.83 -52.49 -0.41 2.36 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 20 N -0.77 -21.79 11.81 55.50 0.66 -21.13 16 21 Si 0.93 19.12 29.55 -169.99 -5.02 14.10 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.09 -2.04 11.49 -16.39 -0.19 -2.22 16 26 H 0.09 1.47 5.51 -51.93 -0.29 1.18 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.39 5.52 8.24 -40.82 -0.34 5.18 16 38 H 0.18 4.61 5.92 -52.49 -0.31 4.30 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.14 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -32.47 320.73 -7.09 -39.56 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -5.94 Total: 9.72 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.90 Total: -13.37 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.88 Total: -43.78 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.06 Total: -11.06 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.47 -7.09 -39.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819201882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.357 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds