Wall clock time and date at job start Mon Mar 30 2020 02:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47552 * 2 1 4 4 C 1.52998 * 109.47383 * 239.99614 * 2 1 3 5 5 C 1.52999 * 109.47311 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47404 * 59.99854 * 5 4 2 7 7 C 1.52998 * 109.47380 * 300.00331 * 6 5 4 8 8 C 1.52999 * 109.47122 * 59.99497 * 7 6 5 9 9 H 1.08998 * 109.46962 * 60.00484 * 8 7 6 10 10 C 1.50707 * 109.47100 * 180.02562 * 8 7 6 11 11 O 1.21303 * 119.99309 * 120.00196 * 10 8 7 12 12 N 1.34769 * 119.99951 * 300.00162 * 10 8 7 13 13 C 1.40594 * 119.99693 * 179.97438 * 12 10 8 14 14 C 1.40650 * 126.08395 * 359.97438 * 13 12 10 15 15 N 1.30905 * 108.38944 * 180.02562 * 14 13 12 16 16 N 1.40075 * 108.40615 * 359.97438 * 15 14 13 17 17 C 1.37323 * 126.06722 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00043 * 180.02562 * 17 16 15 19 19 C 1.38990 * 120.00330 * 0.02562 * 17 16 15 20 20 N 1.31299 * 119.99795 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00100 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47327 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47270 * 120.00135 * 21 19 17 24 24 H 1.48499 * 109.47211 * 240.00008 * 21 19 17 25 25 C 1.35685 * 126.08136 * 179.97438 * 13 12 10 26 26 H 1.09001 * 109.47277 * 300.00161 * 1 2 3 27 27 H 1.09004 * 109.47137 * 60.00389 * 1 2 3 28 28 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46992 * 300.00184 * 4 2 1 30 30 H 1.09004 * 109.46986 * 59.99905 * 4 2 1 31 31 H 1.09001 * 109.47205 * 180.02562 * 5 4 2 32 32 H 1.08998 * 109.46962 * 299.99859 * 5 4 2 33 33 H 1.08998 * 109.47057 * 60.00063 * 6 5 4 34 34 H 1.08998 * 109.47348 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.46807 * 299.99885 * 7 6 5 36 36 H 1.08995 * 109.47523 * 180.02562 * 7 6 5 37 37 H 0.96996 * 120.00453 * 0.02562 * 12 10 8 38 38 H 1.08002 * 125.80681 * 0.03201 * 14 13 12 39 39 H 0.96995 * 119.99726 * 180.02562 * 20 19 17 40 40 H 1.07998 * 126.24416 * 359.97438 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7215 1.2493 9 1 1.6758 -1.7490 1.2492 10 6 1.5371 -0.0105 2.4795 11 8 0.8401 0.9759 2.3676 12 7 1.8623 -0.4707 3.7037 13 6 1.3941 0.1930 4.8513 14 6 0.5834 1.3421 4.8709 15 7 0.3557 1.6657 6.1187 16 7 1.0087 0.7396 6.9420 17 6 1.0103 0.7388 8.3152 18 1 1.5499 -0.0260 8.8542 19 6 0.3175 1.7221 9.0117 20 7 -0.3389 2.6515 8.3565 21 14 0.3192 1.7204 10.8796 22 1 1.1267 0.5760 11.3729 23 1 0.9074 2.9907 11.3752 24 1 -1.0747 1.5938 11.3757 25 6 1.6439 -0.1613 6.1371 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6767 -1.7490 -1.2491 30 1 1.6767 -0.2075 -2.1392 31 1 3.9334 -1.2354 -2.1390 32 1 3.9337 0.3057 -1.2487 33 1 3.7158 -2.4708 0.0003 34 1 5.1695 -1.4441 0.0004 35 1 3.9332 0.3055 1.2498 36 1 3.9328 -1.2358 2.1396 37 1 2.4200 -1.2593 3.7932 38 1 0.2118 1.8681 4.0038 39 1 -0.8220 3.3379 8.8426 40 1 2.2369 -1.0026 6.4639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819201882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:12 Heat of formation + Delta-G solvation = 0.224446 kcal Electronic energy + Delta-G solvation = -21534.604264 eV Core-core repulsion = 18349.288406 eV Total energy + Delta-G solvation = -3185.315858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82628 -40.84756 -38.56745 -35.95203 -35.00164 -33.28398 -32.42075 -31.89522 -29.50972 -27.50821 -26.67734 -24.43198 -22.88395 -22.46185 -21.57932 -21.13154 -20.53381 -19.26458 -17.96963 -17.39143 -16.85629 -16.16629 -15.98031 -15.47844 -15.43667 -15.11814 -15.08711 -14.92244 -14.78329 -13.88015 -13.59194 -13.38879 -13.27437 -13.14061 -12.92658 -12.83358 -12.70150 -12.38413 -12.11345 -12.02850 -11.80251 -11.69199 -11.39719 -11.29200 -10.98957 -10.93014 -10.80960 -10.23463 -10.09266 -8.49483 -8.46707 -6.23596 1.23179 1.39820 1.56229 1.59023 1.89188 2.07311 2.36215 2.55388 2.94224 3.09342 3.66901 3.77840 3.84585 4.21377 4.29018 4.37597 4.44807 4.48415 4.54423 4.60230 4.61966 4.67178 4.82735 4.97144 5.00784 5.05116 5.10734 5.11764 5.23588 5.28008 5.30769 5.35798 5.40116 5.44212 5.47998 5.63077 5.68586 5.97163 6.34191 6.75168 6.82808 7.45694 7.51347 7.70350 8.53068 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.045471 B = 0.003529 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.632475 B = 7932.541370 C = 8360.400466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 H 0.051 0.949 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.111 4.111 7 C -0.110 4.110 8 C -0.085 4.085 9 H 0.117 0.883 10 C 0.497 3.503 11 O -0.571 6.571 12 N -0.619 5.619 13 C -0.043 4.043 14 C -0.062 4.062 15 N -0.311 5.311 16 N -0.169 5.169 17 C -0.354 4.354 18 H 0.141 0.859 19 C -0.008 4.008 20 N -0.826 5.826 21 Si 1.020 2.980 22 H -0.240 1.240 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.083 4.083 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.417 0.583 38 H 0.166 0.834 39 H 0.276 0.724 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.997 -11.751 -13.937 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.145 4.145 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.148 4.148 8 C -0.106 4.106 9 H 0.135 0.865 10 C 0.286 3.714 11 O -0.450 6.450 12 N -0.264 5.264 13 C -0.149 4.149 14 C -0.237 4.237 15 N -0.143 5.143 16 N 0.061 4.939 17 C -0.485 4.485 18 H 0.158 0.842 19 C -0.219 4.219 20 N -0.454 5.454 21 Si 0.839 3.161 22 H -0.163 1.163 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.233 4.233 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.182 0.818 39 H 0.085 0.915 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.806 -10.064 -13.228 18.363 hybrid contribution 0.178 -0.227 0.318 0.429 sum 7.984 -10.292 -12.910 18.339 Atomic orbital electron populations 1.22015 0.95737 1.01689 1.02079 1.20867 0.95414 0.98751 0.93635 0.93022 1.21582 0.95971 1.00936 0.95974 1.21583 0.95048 1.00723 0.98595 1.21513 1.00980 0.99646 0.92717 1.21569 0.91467 1.01372 1.00402 1.21374 0.97977 1.00849 0.90384 0.86532 1.21473 0.80164 0.84822 0.84938 1.90524 1.39564 1.28435 1.86502 1.42582 1.50876 1.30088 1.02816 1.17402 1.10551 1.00330 0.86597 1.24142 1.04529 0.99409 0.95602 1.78136 1.21316 1.15052 0.99845 1.44840 1.28023 1.15272 1.05739 1.20660 1.35034 1.15840 0.77012 0.84167 1.26899 0.94031 0.93908 1.07093 1.70415 1.24646 1.11577 1.38796 0.84519 0.78865 0.79576 0.73119 1.16261 1.19809 1.19804 1.22003 1.10168 1.02006 0.89123 0.93274 0.92481 0.92349 0.90612 0.91381 0.90244 0.92881 0.90242 0.90555 0.93100 0.90180 0.74587 0.81751 0.91474 0.79583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 8.87 71.98 0.64 -3.49 16 2 C -0.07 -1.57 1.89 -10.80 -0.02 -1.59 16 3 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 4 C -0.11 -1.70 5.20 30.59 0.16 -1.54 16 5 C -0.12 -1.66 5.92 30.59 0.18 -1.48 16 6 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 7 C -0.11 -2.00 5.10 30.59 0.16 -1.85 16 8 C -0.08 -1.92 2.06 -11.54 -0.02 -1.95 16 9 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 10 C 0.50 17.05 6.83 87.66 0.60 17.65 16 11 O -0.57 -24.94 10.81 -3.10 -0.03 -24.97 16 12 N -0.62 -21.38 5.36 -303.92 -1.63 -23.01 16 13 C -0.04 -1.99 6.90 37.73 0.26 -1.73 16 14 C -0.06 -3.45 10.85 85.42 0.93 -2.52 16 15 N -0.31 -19.22 10.40 -56.47 -0.59 -19.81 16 16 N -0.17 -9.59 3.74 -190.01 -0.71 -10.30 16 17 C -0.35 -19.06 10.25 84.01 0.86 -18.20 16 18 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 19 C -0.01 -0.43 5.50 84.95 0.47 0.04 16 20 N -0.83 -48.58 11.81 21.66 0.26 -48.33 16 21 Si 1.02 39.12 29.55 68.60 2.03 41.14 16 22 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 23 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 24 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 25 C -0.08 -3.89 11.49 83.38 0.96 -2.93 16 26 H 0.05 1.70 5.51 -2.39 -0.01 1.68 16 27 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.25 7.57 -2.39 -0.02 1.23 16 37 H 0.42 10.51 8.24 -92.71 -0.76 9.74 16 38 H 0.17 9.35 5.92 -2.91 -0.02 9.33 16 39 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.19 6.87 8.06 -2.91 -0.02 6.84 16 Total: -1.00 -75.79 320.73 4.95 -70.84 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.28 Total: 35.26 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 5.34 Total: -20.84 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -2.67 Total: -101.44 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.03 Total: -24.97 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.14 kcal Total: -75.79 4.95 -70.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819201882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.069 kcal (2) G-P(sol) polarization free energy of solvation -75.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds