Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 O 1.42900 * 109.46823 * 119.99609 * 2 1 3 5 5 C 1.35979 * 116.99931 * 83.27311 * 4 2 1 6 6 C 1.38721 * 119.98480 * 177.56577 * 5 4 2 7 7 C 1.38100 * 120.01656 * 179.76776 * 6 5 4 8 8 C 1.38846 * 119.97981 * 0.50260 * 7 6 5 9 9 N 1.40098 * 120.01079 * 179.72431 * 8 7 6 10 10 C 1.37613 * 119.99975 * 214.89834 * 9 8 7 11 11 N 1.30344 * 120.00175 * 6.11841 * 10 9 8 12 12 N 1.37519 * 120.00023 * 186.12214 * 10 9 8 13 13 C 1.46495 * 119.99939 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46952 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00537 * 359.97438 * 14 13 12 16 16 C 1.37888 * 119.99736 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99637 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47545 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46946 * 120.00072 * 18 16 14 21 21 H 1.48505 * 109.47328 * 239.99749 * 18 16 14 22 22 C 1.38846 * 119.97198 * 359.74816 * 8 7 6 23 23 C 1.38094 * 119.98176 * 0.02562 * 22 8 7 24 24 H 1.08998 * 109.47109 * 300.00339 * 1 2 3 25 25 H 1.09001 * 109.46813 * 60.00690 * 1 2 3 26 26 H 1.08998 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47109 * 239.99661 * 2 1 3 28 28 H 1.08998 * 109.47485 * 59.99891 * 3 2 1 29 29 H 1.08997 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99323 * 3 2 1 31 31 H 1.07998 * 119.98913 * 0.02562 * 6 5 4 32 32 H 1.08003 * 120.00721 * 180.25457 * 7 6 5 33 33 H 0.97009 * 120.00266 * 34.90187 * 9 8 7 34 34 H 0.96995 * 120.00328 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00183 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.47458 * 299.99442 * 13 12 10 37 37 H 1.08994 * 109.47472 * 59.99444 * 13 12 10 38 38 H 0.96999 * 120.00173 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.00427 * 179.97438 * 22 8 7 40 40 H 1.08001 * 119.98960 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0783 -2.0303 1.1103 6 6 2.5794 -2.7435 2.1894 7 6 2.6483 -4.1217 2.1346 8 6 2.2255 -4.7927 0.9950 9 7 2.3005 -6.1905 0.9364 10 6 2.5923 -6.8146 -0.2548 11 7 2.9159 -6.1058 -1.2998 12 7 2.5424 -8.1860 -0.3428 13 6 2.8536 -8.8504 -1.6108 14 6 2.7272 -10.3425 -1.4404 15 1 2.4439 -10.7546 -0.4833 16 6 2.9733 -11.1814 -2.5066 17 7 3.3179 -10.6796 -3.6723 18 14 2.8173 -13.0308 -2.2952 19 1 2.4193 -13.3375 -0.8977 20 1 1.7858 -13.5504 -3.2285 21 1 4.1223 -13.6748 -2.5914 22 6 1.7289 -4.0779 -0.0868 23 6 1.6562 -2.7001 -0.0287 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 2.9119 -2.2211 3.0743 32 1 3.0346 -4.6771 2.9765 33 1 2.1467 -6.7184 1.7356 34 1 3.1220 -6.5457 -2.1393 35 1 2.3019 -8.7135 0.4348 36 1 2.1581 -8.5119 -2.3788 37 1 3.8725 -8.6043 -1.9096 38 1 3.4914 -11.2698 -4.4223 39 1 1.4003 -4.5992 -0.9737 40 1 1.2703 -2.1439 -0.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849023491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = 14.972377 kcal Electronic energy + Delta-G solvation = -20498.739800 eV Core-core repulsion = 17314.063460 eV Total energy + Delta-G solvation = -3184.676340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23063 -38.70540 -36.91746 -34.31287 -33.13977 -32.43607 -30.96626 -30.20543 -28.42815 -27.46363 -26.66933 -23.32072 -23.17936 -21.94090 -20.74349 -19.63022 -18.26850 -17.80672 -17.08358 -15.91773 -15.62126 -15.46280 -14.96236 -14.58866 -14.40600 -14.09423 -13.77478 -13.48153 -13.24458 -13.01114 -12.87340 -12.56836 -12.27284 -12.25646 -12.11252 -12.03753 -11.56486 -11.24590 -11.00973 -10.96425 -10.66417 -10.54656 -10.32935 -9.48425 -9.09915 -8.88436 -8.62178 -8.55022 -7.37898 -7.07750 -6.26361 -4.32322 1.54491 1.70445 3.17574 3.18458 3.25722 3.28271 3.35136 3.64893 4.13386 4.24917 4.59537 4.71995 4.82539 4.88707 5.05642 5.10932 5.12777 5.29785 5.32701 5.49591 5.50975 5.55763 5.62590 5.75862 5.88971 5.95036 6.06648 6.22767 6.50619 6.63354 6.65945 6.91958 7.00540 7.32746 7.36062 7.46866 7.55147 7.72125 7.85886 8.17838 8.61028 8.89692 9.33200 9.44843 10.84197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041623 B = 0.002780 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.541932 B =10069.004077 C =10477.114208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 C -0.147 4.147 4 O -0.316 6.316 5 C 0.098 3.902 6 C -0.136 4.136 7 C -0.124 4.124 8 C 0.160 3.840 9 N -0.673 5.673 10 C 0.620 3.380 11 N -0.832 5.832 12 N -0.757 5.757 13 C 0.261 3.739 14 C -0.538 4.538 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.067 4.067 23 C -0.191 4.191 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.407 0.593 34 H 0.345 0.655 35 H 0.382 0.618 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.144 0.856 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 18.501 9.718 21.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.020 3.980 3 C -0.204 4.204 4 O -0.231 6.231 5 C 0.053 3.947 6 C -0.155 4.155 7 C -0.145 4.145 8 C 0.063 3.937 9 N -0.307 5.307 10 C 0.253 3.747 11 N -0.482 5.482 12 N -0.399 5.399 13 C 0.139 3.861 14 C -0.577 4.577 15 H 0.082 0.918 16 C -0.141 4.141 17 N -0.524 5.524 18 Si 0.733 3.267 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.088 4.088 23 C -0.210 4.210 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.242 0.758 34 H 0.163 0.837 35 H 0.214 0.786 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.162 0.838 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.289 19.579 9.244 22.073 hybrid contribution -0.176 -2.606 0.059 2.613 sum -4.465 16.973 9.304 19.864 Atomic orbital electron populations 1.22385 0.95349 1.03247 1.02777 1.22362 0.94150 0.93500 0.87991 1.21832 1.02100 0.93736 1.02761 1.86076 1.81574 1.16514 1.38902 1.18863 0.98853 0.82160 0.94852 1.20020 1.04767 0.92685 0.98073 1.20616 1.01939 0.93332 0.98634 1.17371 0.98810 0.82202 0.95298 1.41282 1.76713 1.03893 1.08793 1.18813 0.88155 0.80530 0.87184 1.69558 1.37385 1.38150 1.03075 1.46022 1.75422 1.02568 1.15875 1.18984 0.95612 0.91925 0.79532 1.21167 1.48739 0.90339 0.97431 0.91838 1.24951 0.94610 0.99619 0.94876 1.69953 1.45533 1.35630 1.01311 0.86327 0.77878 0.84212 0.78310 1.19640 1.20744 1.20737 1.21061 0.96094 0.92639 0.99009 1.21129 1.06893 0.95090 0.97897 0.91668 0.91252 0.91622 0.90820 0.91670 0.91703 0.90723 0.85602 0.85650 0.75750 0.83709 0.78612 0.96214 0.96240 0.92413 0.83845 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.17 37.16 0.34 -1.17 16 2 C 0.08 0.73 2.86 -26.73 -0.08 0.66 16 3 C -0.15 -1.10 9.56 37.16 0.36 -0.74 16 4 O -0.32 -3.92 9.81 -19.67 -0.19 -4.12 16 5 C 0.10 1.32 6.58 -39.23 -0.26 1.06 16 6 C -0.14 -1.75 9.98 -39.45 -0.39 -2.14 16 7 C -0.12 -1.61 9.96 -39.41 -0.39 -2.00 16 8 C 0.16 2.43 6.25 -83.63 -0.52 1.91 16 9 N -0.67 -10.37 5.46 -11.12 -0.06 -10.43 16 10 C 0.62 11.95 8.43 -319.85 -2.70 9.26 16 11 N -0.83 -17.37 10.90 30.18 0.33 -17.04 16 12 N -0.76 -15.44 5.66 -62.93 -0.36 -15.79 16 13 C 0.26 6.53 4.77 -5.20 -0.02 6.50 16 14 C -0.54 -14.28 9.28 -34.43 -0.32 -14.60 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 18 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.07 -1.06 8.57 -39.41 -0.34 -1.40 16 23 C -0.19 -2.64 8.20 -39.46 -0.32 -2.97 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.62 6.95 -51.93 -0.36 0.26 16 27 H 0.07 0.72 6.25 -51.93 -0.32 0.39 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.41 5.01 8.93 -40.82 -0.36 4.65 16 34 H 0.34 7.71 7.15 -40.82 -0.29 7.42 16 35 H 0.38 6.98 8.43 -40.82 -0.34 6.63 16 36 H 0.02 0.54 7.97 -51.93 -0.41 0.13 16 37 H 0.02 0.54 7.97 -51.93 -0.41 0.12 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.14 2.53 6.43 -52.49 -0.34 2.19 16 40 H 0.13 1.52 5.47 -52.49 -0.29 1.23 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -29.86 333.33 -9.92 -39.78 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -5.63 Total: 15.61 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.75 Total: -4.01 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: 0.65 Total: -67.84 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.19 Total: -4.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.86 -9.92 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.755 kcal (2) G-P(sol) polarization free energy of solvation -29.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds