Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46963 * 2 1 4 4 O 1.42900 * 109.46823 * 119.99609 * 2 1 3 5 5 C 1.35979 * 116.99931 * 83.27311 * 4 2 1 6 6 C 1.38721 * 119.98480 * 177.56577 * 5 4 2 7 7 C 1.38100 * 120.01656 * 179.76776 * 6 5 4 8 8 C 1.38846 * 119.97981 * 0.50260 * 7 6 5 9 9 N 1.40098 * 120.01079 * 179.72431 * 8 7 6 10 10 C 1.37613 * 119.99975 * 214.89834 * 9 8 7 11 11 N 1.30344 * 120.00175 * 6.11841 * 10 9 8 12 12 N 1.37519 * 120.00023 * 186.12214 * 10 9 8 13 13 C 1.46495 * 119.99939 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46952 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00537 * 359.97438 * 14 13 12 16 16 C 1.37888 * 119.99736 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99963 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99637 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47545 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46946 * 120.00072 * 18 16 14 21 21 H 1.48505 * 109.47328 * 239.99749 * 18 16 14 22 22 C 1.38846 * 119.97198 * 359.74816 * 8 7 6 23 23 C 1.38094 * 119.98176 * 0.02562 * 22 8 7 24 24 H 1.08998 * 109.47109 * 300.00339 * 1 2 3 25 25 H 1.09001 * 109.46813 * 60.00690 * 1 2 3 26 26 H 1.08998 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47109 * 239.99661 * 2 1 3 28 28 H 1.08998 * 109.47485 * 59.99891 * 3 2 1 29 29 H 1.08997 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46792 * 299.99323 * 3 2 1 31 31 H 1.07998 * 119.98913 * 0.02562 * 6 5 4 32 32 H 1.08003 * 120.00721 * 180.25457 * 7 6 5 33 33 H 0.97009 * 120.00266 * 34.90187 * 9 8 7 34 34 H 0.96995 * 120.00328 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00183 * 359.97438 * 12 10 9 36 36 H 1.09003 * 109.47458 * 299.99442 * 13 12 10 37 37 H 1.08994 * 109.47472 * 59.99444 * 13 12 10 38 38 H 0.96999 * 120.00173 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.00427 * 179.97438 * 22 8 7 40 40 H 1.08001 * 119.98960 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0783 -2.0303 1.1103 6 6 2.5794 -2.7435 2.1894 7 6 2.6483 -4.1217 2.1346 8 6 2.2255 -4.7927 0.9950 9 7 2.3005 -6.1905 0.9364 10 6 2.5923 -6.8146 -0.2548 11 7 2.9159 -6.1058 -1.2998 12 7 2.5424 -8.1860 -0.3428 13 6 2.8536 -8.8504 -1.6108 14 6 2.7272 -10.3425 -1.4404 15 1 2.4439 -10.7546 -0.4833 16 6 2.9733 -11.1814 -2.5066 17 7 3.3179 -10.6796 -3.6723 18 14 2.8173 -13.0308 -2.2952 19 1 2.4193 -13.3375 -0.8977 20 1 1.7858 -13.5504 -3.2285 21 1 4.1223 -13.6748 -2.5914 22 6 1.7289 -4.0779 -0.0868 23 6 1.6562 -2.7001 -0.0287 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6767 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 2.9119 -2.2211 3.0743 32 1 3.0346 -4.6771 2.9765 33 1 2.1467 -6.7184 1.7356 34 1 3.1220 -6.5457 -2.1393 35 1 2.3019 -8.7135 0.4348 36 1 2.1581 -8.5119 -2.3788 37 1 3.8725 -8.6043 -1.9096 38 1 3.4914 -11.2698 -4.4223 39 1 1.4003 -4.5992 -0.9737 40 1 1.2703 -2.1439 -0.8702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849023491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -1.689936 kcal Electronic energy + Delta-G solvation = -20499.462332 eV Core-core repulsion = 17314.063460 eV Total energy + Delta-G solvation = -3185.398872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26682 -39.95708 -38.24734 -35.83870 -34.52820 -33.72836 -32.34809 -31.57244 -29.77984 -28.50571 -28.02856 -24.96461 -24.30183 -23.25687 -21.65767 -21.12033 -19.59778 -19.17822 -18.44269 -17.59421 -16.80719 -16.71886 -16.36190 -16.02108 -15.49224 -15.41423 -15.12810 -14.74539 -14.51123 -14.15076 -14.04913 -13.91267 -13.39083 -13.32437 -13.10192 -13.02997 -12.86022 -12.81164 -12.57934 -12.22882 -12.10516 -11.65774 -11.49597 -11.47664 -10.80992 -10.37028 -10.23467 -9.80283 -9.03008 -8.34567 -8.32711 -6.47080 0.46982 0.56852 1.41654 1.41683 1.54889 1.87159 2.13881 2.34873 2.37934 2.97789 3.03348 3.26485 3.87885 3.96362 4.02888 4.10852 4.22719 4.36672 4.49681 4.59079 4.70599 4.73630 4.85560 4.89443 4.92294 5.00962 5.18554 5.21169 5.24083 5.28409 5.30878 5.45312 5.52123 5.55289 5.70915 5.81821 5.93315 6.32811 6.46806 6.62207 6.64021 7.19284 7.32071 7.81478 8.79236 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041623 B = 0.002780 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.541932 B =10069.004077 C =10477.114208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.066 3.934 3 C -0.143 4.143 4 O -0.323 6.323 5 C 0.098 3.902 6 C -0.138 4.138 7 C -0.111 4.111 8 C 0.134 3.866 9 N -0.656 5.656 10 C 0.621 3.379 11 N -0.846 5.846 12 N -0.752 5.752 13 C 0.281 3.719 14 C -0.553 4.553 15 H 0.076 0.924 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.980 3.020 19 H -0.258 1.258 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.087 4.087 23 C -0.194 4.194 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.150 0.850 32 H 0.155 0.845 33 H 0.423 0.577 34 H 0.331 0.669 35 H 0.395 0.605 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.839 18.870 11.728 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.010 3.990 3 C -0.200 4.200 4 O -0.238 6.238 5 C 0.052 3.948 6 C -0.157 4.157 7 C -0.132 4.132 8 C 0.039 3.961 9 N -0.293 5.293 10 C 0.254 3.746 11 N -0.495 5.495 12 N -0.395 5.395 13 C 0.158 3.842 14 C -0.591 4.591 15 H 0.095 0.905 16 C -0.193 4.193 17 N -0.565 5.565 18 Si 0.804 3.196 19 H -0.181 1.181 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.108 4.108 23 C -0.213 4.213 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.168 0.832 32 H 0.172 0.828 33 H 0.261 0.739 34 H 0.147 0.853 35 H 0.229 0.771 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.603 19.986 11.327 23.430 hybrid contribution -0.103 -2.537 -0.548 2.597 sum -4.706 17.450 10.780 21.044 Atomic orbital electron populations 1.22360 0.94389 1.02694 1.03936 1.22656 0.95025 0.94381 0.86918 1.21852 1.01859 0.92315 1.04018 1.86081 1.81592 1.15820 1.40300 1.19041 0.98135 0.82858 0.94733 1.20377 1.03957 0.92738 0.98621 1.20872 1.00428 0.93538 0.98339 1.17576 1.00395 0.81853 0.96275 1.41150 1.76001 1.04267 1.07855 1.18998 0.87431 0.80046 0.88100 1.69638 1.38763 1.38102 1.03023 1.45653 1.75823 1.03181 1.14888 1.18444 0.93082 0.91986 0.80707 1.21550 1.48543 0.90960 0.98084 0.90546 1.25957 0.94008 1.04876 0.94432 1.70088 1.46517 1.37585 1.02301 0.85169 0.77819 0.77730 0.78864 1.18147 1.20421 1.20416 1.20959 0.97580 0.93567 0.98705 1.21197 1.06968 0.94402 0.98743 0.91339 0.89281 0.93001 0.91296 0.91255 0.92102 0.88630 0.83229 0.82769 0.73854 0.85336 0.77101 0.99129 0.99238 0.92197 0.86377 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.17 71.98 0.66 -2.05 16 2 C 0.07 1.18 2.86 30.60 0.09 1.27 16 3 C -0.14 -1.86 9.56 71.98 0.69 -1.17 16 4 O -0.32 -7.55 9.81 -93.31 -0.92 -8.46 16 5 C 0.10 2.52 6.58 22.50 0.15 2.67 16 6 C -0.14 -3.22 9.98 22.35 0.22 -2.99 16 7 C -0.11 -2.63 9.96 22.38 0.22 -2.41 16 8 C 0.13 4.00 6.25 38.11 0.24 4.24 16 9 N -0.66 -19.78 5.46 -189.08 -1.03 -20.81 16 10 C 0.62 24.28 8.43 260.45 2.20 26.47 16 11 N -0.85 -36.78 10.90 -58.42 -0.64 -37.41 16 12 N -0.75 -31.00 5.66 -353.01 -2.00 -33.00 16 13 C 0.28 14.54 4.77 85.63 0.41 14.95 16 14 C -0.55 -29.47 9.28 25.60 0.24 -29.24 16 15 H 0.08 3.78 7.60 -2.91 -0.02 3.76 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 18 Si 0.98 41.86 29.54 68.60 2.03 43.88 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.09 -2.80 8.57 22.38 0.19 -2.61 16 23 C -0.19 -5.36 8.20 22.35 0.18 -5.18 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.05 0.94 6.95 -2.39 -0.02 0.92 16 27 H 0.07 1.29 6.25 -2.39 -0.01 1.28 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.42 9.71 8.93 -92.70 -0.83 8.88 16 34 H 0.33 15.69 7.15 -92.71 -0.66 15.03 16 35 H 0.39 14.15 8.43 -92.71 -0.78 13.37 16 36 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 37 H -0.01 -0.58 7.97 -2.39 -0.02 -0.60 16 38 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.12 4.39 6.43 -2.91 -0.02 4.37 16 40 H 0.14 3.32 5.47 -2.91 -0.02 3.30 16 Total: -1.00 -65.19 333.33 2.48 -62.71 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -1.19 Total: 41.94 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 5.95 Total: 4.81 kcal Atomic # 7 Polarization: -141.50 SS G_CDS: -3.38 Total: -144.88 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.92 Total: -8.46 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -65.19 2.48 -62.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849023491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.019 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds