Wall clock time and date at job start Mon Mar 30 2020 02:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.43801 * 2 1 4 4 C 1.53387 * 109.43134 * 240.09026 * 2 1 3 5 5 C 1.50886 * 108.19288 * 189.39786 * 4 2 1 6 6 C 1.34570 * 128.32320 * 196.62049 * 5 4 2 7 7 N 1.35204 * 107.61682 * 179.49029 * 6 5 4 8 8 H 0.96997 * 126.00437 * 180.26673 * 7 6 5 9 9 N 1.40309 * 107.99188 * 0.30707 * 7 6 5 10 10 C 1.30132 * 108.12435 * 0.03717 * 9 7 6 11 11 C 1.50947 * 128.28498 * 179.71374 * 10 9 7 12 12 H 1.09001 * 109.71781 * 316.41723 * 11 10 9 13 13 C 1.50700 * 109.71856 * 77.06234 * 11 10 9 14 14 O 1.21282 * 120.00297 * 119.99439 * 13 11 10 15 15 N 1.34775 * 119.99708 * 300.00292 * 13 11 10 16 16 C 1.46498 * 120.00172 * 359.97438 * 15 13 11 17 17 C 1.46501 * 120.00125 * 179.97438 * 15 13 11 18 18 C 1.50703 * 109.47228 * 89.99649 * 17 15 13 19 19 H 1.07995 * 119.99689 * 0.02562 * 18 17 15 20 20 C 1.37879 * 119.99888 * 180.02562 * 18 17 15 21 21 N 1.31510 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47086 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47081 * 119.99829 * 22 20 18 25 25 H 1.48504 * 109.47427 * 240.00421 * 22 20 18 26 26 C 1.53032 * 109.42911 * 119.84699 * 2 1 3 27 27 H 1.08993 * 109.47178 * 179.90652 * 1 2 3 28 28 H 1.09000 * 109.46820 * 299.90871 * 1 2 3 29 29 H 1.09005 * 109.46462 * 59.90364 * 1 2 3 30 30 H 1.09001 * 109.71572 * 69.72644 * 4 2 1 31 31 H 1.08991 * 109.72298 * 309.07560 * 4 2 1 32 32 H 1.08002 * 126.19534 * 359.76281 * 6 5 4 33 33 H 1.08996 * 109.47685 * 90.00467 * 16 15 13 34 34 H 1.09006 * 109.47444 * 210.00318 * 16 15 13 35 35 H 1.08997 * 109.47236 * 330.00036 * 16 15 13 36 36 H 1.08992 * 109.47428 * 209.99941 * 17 15 13 37 37 H 1.09002 * 109.46910 * 330.00208 * 17 15 13 38 38 H 0.96998 * 120.00357 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.42282 * 311.90371 * 26 2 1 40 40 H 1.09001 * 109.42691 * 71.79057 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0403 -0.7213 -1.2538 5 6 3.5306 -0.9111 -1.1144 6 6 4.4272 -1.2086 -2.0728 7 7 5.6452 -1.2693 -1.4891 8 1 6.4835 -1.4622 -1.9374 9 7 5.4836 -1.0053 -0.1205 10 6 4.2191 -0.7959 0.1048 11 6 3.5428 -0.4791 1.4165 12 1 3.9420 -1.1221 2.2009 13 6 3.7782 0.9659 1.7739 14 8 2.8365 1.7179 1.9110 15 7 5.0351 1.4226 1.9410 16 6 6.1726 0.5143 1.7757 17 6 5.2640 2.8274 2.2878 18 6 5.2790 2.9787 3.7872 19 1 5.1331 2.1147 4.4185 20 6 5.4791 4.2201 4.3529 21 7 5.6563 5.2722 3.5841 22 14 5.4984 4.4075 6.2113 23 1 5.2767 3.0827 6.8447 24 1 6.8131 4.9482 6.6407 25 1 4.4200 5.3404 6.6261 26 6 2.0390 -0.7182 1.2517 27 1 -0.3633 -1.0276 -0.0017 28 1 -0.3633 0.5124 0.8908 29 1 -0.3632 0.5154 -0.8892 30 1 1.8273 -0.1188 -2.1369 31 1 1.5528 -1.6919 -1.3439 32 1 4.2133 -1.3656 -3.1197 33 1 6.5007 0.5280 0.7364 34 1 6.9913 0.8363 2.4194 35 1 5.8723 -0.4974 2.0486 36 1 6.2218 3.1509 1.8805 37 1 4.4655 3.4399 1.8689 38 1 5.7973 6.1455 3.9820 39 1 1.5121 -0.3384 2.1271 40 1 1.8567 -1.7885 1.1550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857844933.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:49 Heat of formation + Delta-G solvation = 38.608743 kcal Electronic energy + Delta-G solvation = -22442.854341 eV Core-core repulsion = 19259.202951 eV Total energy + Delta-G solvation = -3183.651390 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57389 -39.01499 -36.61295 -34.63574 -32.99144 -32.10002 -30.82534 -29.68738 -27.70784 -26.07134 -25.63069 -24.28855 -22.47301 -21.14943 -20.62333 -19.45329 -17.81034 -17.48834 -16.47503 -16.02084 -15.25717 -15.14773 -14.91249 -14.31782 -14.14387 -13.73997 -13.46898 -13.18906 -12.69838 -12.56821 -12.32255 -12.04943 -11.95271 -11.86361 -11.70682 -11.37000 -11.14811 -10.82542 -10.79052 -10.57428 -10.40233 -10.38013 -10.10775 -9.97863 -9.60328 -9.48568 -8.60630 -8.38174 -8.32169 -7.45836 -5.98301 -4.02723 1.93981 2.75226 2.85768 3.33684 3.40653 3.45034 3.57710 4.13572 4.50020 4.57206 4.74228 4.97354 5.07673 5.20396 5.31338 5.36804 5.47477 5.60130 5.64382 5.76002 5.80083 5.88802 5.97409 6.02644 6.05647 6.10226 6.25748 6.33732 6.43403 6.45024 6.54934 6.75453 6.76707 7.15932 7.33614 7.52278 7.66093 7.72137 7.98866 8.30802 8.55010 8.97348 9.19651 9.62234 11.09737 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022099 B = 0.005435 C = 0.004736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.702091 B = 5150.106543 C = 5910.972988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.088 0.912 4 C -0.036 4.036 5 C -0.226 4.226 6 C 0.054 3.946 7 N -0.489 5.489 8 H 0.437 0.563 9 N -0.271 5.271 10 C 0.092 3.908 11 C -0.031 4.031 12 H 0.106 0.894 13 C 0.514 3.486 14 O -0.536 6.536 15 N -0.595 5.595 16 C 0.090 3.910 17 C 0.245 3.755 18 C -0.522 4.522 19 H 0.058 0.942 20 C 0.059 3.941 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.088 4.088 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.173 0.827 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.042 0.958 38 H 0.262 0.738 39 H 0.082 0.918 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -15.826 -12.084 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.107 0.893 4 C -0.074 4.074 5 C -0.238 4.238 6 C -0.091 4.091 7 N -0.197 5.197 8 H 0.280 0.720 9 N -0.094 5.094 10 C -0.076 4.076 11 C -0.055 4.055 12 H 0.124 0.876 13 C 0.299 3.701 14 O -0.413 6.413 15 N -0.326 5.326 16 C -0.054 4.054 17 C 0.126 3.874 18 C -0.561 4.561 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.536 5.536 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.126 4.126 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.190 0.810 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.011 -15.277 -11.508 19.362 hybrid contribution 0.045 0.101 0.324 0.342 sum -2.966 -15.176 -11.184 19.084 Atomic orbital electron populations 1.21759 0.95128 1.01037 1.01876 1.21205 0.95399 1.01271 0.93321 0.89349 1.20095 0.89102 0.99918 0.98307 1.20111 0.97527 1.13897 0.92225 1.21976 0.85509 1.02550 0.99092 1.46417 1.08334 1.58202 1.06744 0.71969 1.77324 1.17527 1.22089 0.92411 1.21884 0.90628 0.99298 0.95798 1.19983 0.96652 0.96520 0.92316 0.87640 1.19936 0.83584 0.88433 0.78142 1.90646 1.41422 1.57492 1.51783 1.48165 1.04811 1.12948 1.66715 1.21913 0.89763 0.92819 1.00936 1.19266 0.97295 0.75128 0.95716 1.21485 1.48950 0.93954 0.91689 0.92397 1.24942 0.95229 0.95641 0.98391 1.69947 1.49432 0.99268 1.34916 0.86444 0.77484 0.78151 0.85351 1.19781 1.21031 1.20891 1.21381 0.91965 0.99855 0.99431 0.93203 0.92250 0.93009 0.91516 0.91526 0.81028 0.92328 0.91868 0.92209 0.95265 0.93953 0.92855 0.89961 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.15 37.16 0.34 -1.31 16 2 C -0.09 -1.31 2.48 -90.40 -0.22 -1.53 16 3 H 0.09 1.58 6.31 -51.93 -0.33 1.26 16 4 C -0.04 -0.42 5.57 -27.59 -0.15 -0.57 16 5 C -0.23 -2.99 5.89 -104.98 -0.62 -3.61 16 6 C 0.05 0.57 11.95 -17.36 -0.21 0.36 16 7 N -0.49 -5.41 7.37 30.35 0.22 -5.19 16 8 H 0.44 3.29 8.96 -182.44 -1.64 1.65 16 9 N -0.27 -4.01 8.44 33.75 0.28 -3.73 16 10 C 0.09 1.43 5.80 -82.34 -0.48 0.95 16 11 C -0.03 -0.52 2.28 -92.72 -0.21 -0.73 16 12 H 0.11 1.62 7.44 -51.93 -0.39 1.23 16 13 C 0.51 11.24 6.67 -10.99 -0.07 11.17 16 14 O -0.54 -13.50 13.93 5.56 0.08 -13.42 16 15 N -0.60 -13.66 2.86 -182.96 -0.52 -14.18 16 16 C 0.09 1.69 8.60 59.85 0.51 2.21 16 17 C 0.25 6.76 5.16 -5.19 -0.03 6.73 16 18 C -0.52 -15.32 9.39 -34.44 -0.32 -15.64 16 19 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 22 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 C -0.09 -1.27 4.24 -26.63 -0.11 -1.38 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.06 1.06 6.26 -51.93 -0.33 0.74 16 34 H 0.06 1.20 8.07 -51.93 -0.42 0.79 16 35 H 0.06 1.01 5.68 -51.93 -0.30 0.72 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.08 1.27 7.72 -51.93 -0.40 0.87 16 40 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 318.30 15.07 4.80 4.80 Total: -1.00 -34.81 318.30 -8.19 -43.00 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -7.10 Total: -0.30 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.67 Total: -1.71 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.72 Total: -49.71 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.81 -8.19 -43.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857844933.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.611 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds