Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.43063 * 2 1 4 4 C 1.53382 * 109.43411 * 119.90400 * 2 1 3 5 5 C 1.50881 * 108.19805 * 170.56001 * 4 2 1 6 6 C 1.34577 * 128.32493 * 163.43237 * 5 4 2 7 7 N 1.35204 * 107.61297 * 180.13499 * 6 5 4 8 8 H 0.97000 * 125.99946 * 179.97438 * 7 6 5 9 9 N 1.40311 * 107.99383 * 359.97070 * 7 6 5 10 10 C 1.30129 * 108.12378 * 359.95261 * 9 7 6 11 11 C 1.50945 * 128.28138 * 180.30670 * 10 9 7 12 12 H 1.08996 * 109.71755 * 282.88639 * 11 10 9 13 13 C 1.50702 * 109.72113 * 43.49438 * 11 10 9 14 14 O 1.21280 * 119.99743 * 26.64898 * 13 11 10 15 15 N 1.34776 * 120.00091 * 206.64862 * 13 11 10 16 16 C 1.46501 * 119.99733 * 4.22322 * 15 13 11 17 17 C 1.46493 * 119.99854 * 184.22101 * 15 13 11 18 18 C 1.50703 * 109.47245 * 90.00318 * 17 15 13 19 19 H 1.07994 * 119.99509 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47046 * 59.99825 * 22 20 18 24 24 H 1.48503 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46906 * 299.99743 * 22 20 18 26 26 C 1.53029 * 109.38778 * 240.13210 * 2 1 3 27 27 H 1.09001 * 109.47282 * 299.99106 * 1 2 3 28 28 H 1.08997 * 109.47762 * 59.99635 * 1 2 3 29 29 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.72112 * 290.24118 * 4 2 1 31 31 H 1.09001 * 109.71786 * 50.84118 * 4 2 1 32 32 H 1.07997 * 126.19074 * 0.11526 * 6 5 4 33 33 H 1.09002 * 109.47062 * 91.80714 * 16 15 13 34 34 H 1.09003 * 109.46878 * 211.80226 * 16 15 13 35 35 H 1.08997 * 109.47307 * 331.79653 * 16 15 13 36 36 H 1.09000 * 109.47164 * 210.00113 * 17 15 13 37 37 H 1.09003 * 109.47381 * 330.00111 * 17 15 13 38 38 H 0.96998 * 120.00429 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.42586 * 288.30590 * 26 2 1 40 40 H 1.08996 * 109.42671 * 48.13270 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0403 -0.7211 1.2539 5 6 3.5304 -0.9119 1.1140 6 6 4.4271 -1.2105 2.0721 7 7 5.6437 -1.2800 1.4865 8 1 6.4812 -1.4789 1.9337 9 7 5.4820 -1.0140 0.1184 10 6 4.2188 -0.7953 -0.1050 11 6 3.5430 -0.4732 -1.4157 12 1 3.7197 0.5709 -1.6737 13 6 4.0883 -1.3645 -2.5016 14 8 4.5420 -2.4538 -2.2212 15 7 4.0718 -0.9513 -3.7843 16 6 3.6097 0.3996 -4.1127 17 6 4.5159 -1.8529 -4.8501 18 6 3.3412 -2.6501 -5.3558 19 1 2.3619 -2.5003 -4.9259 20 6 3.5169 -3.5713 -6.3664 21 7 4.7096 -3.7540 -6.8896 22 14 2.0609 -4.5598 -6.9927 23 1 1.0274 -3.6358 -7.5251 24 1 2.5111 -5.4738 -8.0732 25 1 1.4866 -5.3554 -5.8780 26 6 2.0379 -0.7189 -1.2518 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8279 -0.1184 2.1369 31 1 1.5516 -1.6912 1.3447 32 1 4.2135 -1.3662 3.1193 33 1 4.4600 1.0816 -4.1243 34 1 3.1360 0.3929 -5.0944 35 1 2.8895 0.7293 -3.3640 36 1 4.9376 -1.2687 -5.6680 37 1 5.2743 -2.5314 -4.4595 38 1 4.8332 -4.4018 -7.6009 39 1 1.8537 -1.7889 -1.1552 40 1 1.5111 -0.3388 -2.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857844935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = 27.616115 kcal Electronic energy + Delta-G solvation = -22083.167461 eV Core-core repulsion = 18899.039395 eV Total energy + Delta-G solvation = -3184.128066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40448 -38.93789 -36.83906 -34.69720 -32.77767 -32.22582 -30.86534 -29.74610 -27.66025 -26.10167 -25.75331 -24.33026 -22.76759 -21.03654 -20.69469 -18.95876 -18.05586 -17.47106 -16.44156 -16.37385 -15.32175 -15.10900 -14.60852 -14.39125 -14.16898 -13.84699 -13.66095 -13.06341 -12.85748 -12.49905 -12.47036 -12.31521 -12.02975 -11.88265 -11.61681 -11.49752 -11.13442 -11.05160 -10.85479 -10.68647 -10.57224 -10.49902 -10.18431 -10.10254 -9.57404 -9.26694 -8.67265 -8.37868 -8.28427 -7.52551 -5.98417 -4.03269 2.07695 2.88103 3.00439 3.34960 3.39335 3.41519 3.52528 4.07891 4.48333 4.50728 4.81790 4.88540 4.90201 5.15400 5.28161 5.35852 5.42826 5.44579 5.56908 5.62750 5.66322 5.73809 5.77415 5.87419 5.97768 6.01784 6.02555 6.11699 6.23101 6.29241 6.32692 6.49133 6.76380 7.15818 7.43484 7.54496 7.63958 7.89172 7.98620 8.30324 8.52109 8.96897 9.21325 9.61623 11.09577 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.005188 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.876698 B = 5395.271198 C = 5971.571427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.034 4.034 5 C -0.233 4.233 6 C 0.052 3.948 7 N -0.487 5.487 8 H 0.437 0.563 9 N -0.262 5.262 10 C 0.106 3.894 11 C -0.030 4.030 12 H 0.102 0.898 13 C 0.517 3.483 14 O -0.528 6.528 15 N -0.603 5.603 16 C 0.080 3.920 17 C 0.246 3.754 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.100 4.100 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.172 0.828 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.263 0.737 39 H 0.075 0.925 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 10.960 17.087 21.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.072 4.072 5 C -0.245 4.245 6 C -0.093 4.093 7 N -0.196 5.196 8 H 0.280 0.720 9 N -0.083 5.083 10 C -0.064 4.064 11 C -0.053 4.053 12 H 0.120 0.880 13 C 0.302 3.698 14 O -0.404 6.404 15 N -0.336 5.336 16 C -0.064 4.064 17 C 0.127 3.873 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.138 4.138 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.189 0.811 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.224 10.184 16.559 19.894 hybrid contribution -1.010 -0.675 0.189 1.229 sum -5.234 9.509 16.748 19.958 Atomic orbital electron populations 1.21827 0.94781 1.02104 1.01654 1.21149 0.95467 0.99619 0.94346 0.90878 1.20035 0.89452 1.00249 0.97459 1.20043 0.97097 1.15053 0.92320 1.21946 0.85739 1.02586 0.99046 1.46364 1.08460 1.58251 1.06496 0.72016 1.77174 1.18535 1.20820 0.91741 1.21666 0.90739 0.98986 0.94991 1.19956 0.95570 1.00676 0.89125 0.87991 1.19897 0.79730 0.87138 0.83065 1.90676 1.45605 1.22172 1.81965 1.48094 1.63900 1.14509 1.07057 1.21695 0.98582 0.84136 1.01969 1.19264 0.95924 0.88446 0.83708 1.21414 0.95044 1.21457 1.18513 0.92486 1.24936 0.95944 0.96770 0.96467 1.69926 1.21512 1.35349 1.26635 0.86576 0.82560 0.80004 0.78378 1.20227 1.21211 1.20219 1.21578 0.91649 1.02374 0.98210 0.92701 0.92403 0.92459 0.91421 0.91230 0.81050 0.93778 0.90769 0.92250 0.95063 0.93827 0.92718 0.90629 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.15 37.15 0.34 -0.96 16 2 C -0.09 -0.94 2.66 -90.41 -0.24 -1.18 16 3 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 4 C -0.03 -0.36 5.57 -27.60 -0.15 -0.52 16 5 C -0.23 -3.21 5.89 -104.98 -0.62 -3.83 16 6 C 0.05 0.61 11.95 -17.36 -0.21 0.40 16 7 N -0.49 -6.49 7.37 30.35 0.22 -6.27 16 8 H 0.44 4.21 8.96 -182.44 -1.64 2.58 16 9 N -0.26 -4.80 12.32 33.75 0.42 -4.39 16 10 C 0.11 1.83 5.95 -82.35 -0.49 1.34 16 11 C -0.03 -0.50 2.03 -92.61 -0.19 -0.69 16 12 H 0.10 1.47 6.58 -51.93 -0.34 1.13 16 13 C 0.52 11.57 6.71 -10.98 -0.07 11.50 16 14 O -0.53 -14.41 15.65 5.56 0.09 -14.33 16 15 N -0.60 -13.45 2.86 -182.95 -0.52 -13.97 16 16 C 0.08 1.32 10.00 59.85 0.60 1.92 16 17 C 0.25 6.70 5.20 -5.20 -0.03 6.67 16 18 C -0.53 -15.20 9.39 -34.44 -0.32 -15.52 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 22 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.10 -1.41 4.37 -26.52 -0.12 -1.53 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 32 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.06 0.78 5.43 -51.93 -0.28 0.50 16 36 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.04 1.35 7.37 -51.93 -0.38 0.97 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 40 H 0.08 1.03 7.31 -51.93 -0.38 0.65 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -37.06 327.67 -7.94 -45.00 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.20 Total: -0.91 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.60 Total: -0.73 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.85 Total: -51.12 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.06 -7.94 -45.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857844935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.616 kcal (2) G-P(sol) polarization free energy of solvation -37.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds