Wall clock time and date at job start Mon Mar 30 2020 02:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.43063 * 2 1 4 4 C 1.53382 * 109.43411 * 119.90400 * 2 1 3 5 5 C 1.50881 * 108.19805 * 170.56001 * 4 2 1 6 6 C 1.34577 * 128.32493 * 163.43237 * 5 4 2 7 7 N 1.35204 * 107.61297 * 180.13499 * 6 5 4 8 8 H 0.97000 * 125.99946 * 179.97438 * 7 6 5 9 9 N 1.40311 * 107.99383 * 359.97070 * 7 6 5 10 10 C 1.30129 * 108.12378 * 359.95261 * 9 7 6 11 11 C 1.50945 * 128.28138 * 180.30670 * 10 9 7 12 12 H 1.08996 * 109.71755 * 282.88639 * 11 10 9 13 13 C 1.50702 * 109.72113 * 43.49438 * 11 10 9 14 14 O 1.21280 * 119.99743 * 26.64898 * 13 11 10 15 15 N 1.34776 * 120.00091 * 206.64862 * 13 11 10 16 16 C 1.46501 * 119.99733 * 4.22322 * 15 13 11 17 17 C 1.46493 * 119.99854 * 184.22101 * 15 13 11 18 18 C 1.50703 * 109.47245 * 90.00318 * 17 15 13 19 19 H 1.07994 * 119.99509 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00053 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00398 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47046 * 59.99825 * 22 20 18 24 24 H 1.48503 * 109.46956 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46906 * 299.99743 * 22 20 18 26 26 C 1.53029 * 109.38778 * 240.13210 * 2 1 3 27 27 H 1.09001 * 109.47282 * 299.99106 * 1 2 3 28 28 H 1.08997 * 109.47762 * 59.99635 * 1 2 3 29 29 H 1.09006 * 109.47292 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.72112 * 290.24118 * 4 2 1 31 31 H 1.09001 * 109.71786 * 50.84118 * 4 2 1 32 32 H 1.07997 * 126.19074 * 0.11526 * 6 5 4 33 33 H 1.09002 * 109.47062 * 91.80714 * 16 15 13 34 34 H 1.09003 * 109.46878 * 211.80226 * 16 15 13 35 35 H 1.08997 * 109.47307 * 331.79653 * 16 15 13 36 36 H 1.09000 * 109.47164 * 210.00113 * 17 15 13 37 37 H 1.09003 * 109.47381 * 330.00111 * 17 15 13 38 38 H 0.96998 * 120.00429 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.42586 * 288.30590 * 26 2 1 40 40 H 1.08996 * 109.42671 * 48.13270 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8925 1.0279 0.0000 4 6 2.0403 -0.7211 1.2539 5 6 3.5304 -0.9119 1.1140 6 6 4.4271 -1.2105 2.0721 7 7 5.6437 -1.2800 1.4865 8 1 6.4812 -1.4789 1.9337 9 7 5.4820 -1.0140 0.1184 10 6 4.2188 -0.7953 -0.1050 11 6 3.5430 -0.4732 -1.4157 12 1 3.7197 0.5709 -1.6737 13 6 4.0883 -1.3645 -2.5016 14 8 4.5420 -2.4538 -2.2212 15 7 4.0718 -0.9513 -3.7843 16 6 3.6097 0.3996 -4.1127 17 6 4.5159 -1.8529 -4.8501 18 6 3.3412 -2.6501 -5.3558 19 1 2.3619 -2.5003 -4.9259 20 6 3.5169 -3.5713 -6.3664 21 7 4.7096 -3.7540 -6.8896 22 14 2.0609 -4.5598 -6.9927 23 1 1.0274 -3.6358 -7.5251 24 1 2.5111 -5.4738 -8.0732 25 1 1.4866 -5.3554 -5.8780 26 6 2.0379 -0.7189 -1.2518 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8279 -0.1184 2.1369 31 1 1.5516 -1.6912 1.3447 32 1 4.2135 -1.3662 3.1193 33 1 4.4600 1.0816 -4.1243 34 1 3.1360 0.3929 -5.0944 35 1 2.8895 0.7293 -3.3640 36 1 4.9376 -1.2687 -5.6680 37 1 5.2743 -2.5314 -4.4595 38 1 4.8332 -4.4018 -7.6009 39 1 1.8537 -1.7889 -1.1552 40 1 1.5111 -0.3388 -2.1270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857844935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:55 Heat of formation + Delta-G solvation = 1.145414 kcal Electronic energy + Delta-G solvation = -22084.315316 eV Core-core repulsion = 18899.039395 eV Total energy + Delta-G solvation = -3185.275922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50434 -40.58468 -37.90895 -36.59009 -34.76842 -33.57509 -31.85764 -30.96364 -29.57351 -27.36149 -26.91416 -25.82624 -24.50852 -22.32481 -21.60821 -20.18829 -19.50304 -18.67505 -18.50265 -17.95565 -17.07846 -16.31714 -16.26887 -15.88322 -15.36681 -15.08467 -14.78357 -14.30730 -14.23281 -13.97985 -13.82003 -13.63171 -13.46276 -13.17677 -13.07834 -12.90122 -12.75636 -12.52547 -12.44136 -12.19348 -12.07753 -11.73108 -11.54353 -11.53325 -11.26399 -10.64575 -10.56095 -10.27110 -9.41522 -9.27440 -8.22060 -6.37791 1.04896 1.36134 1.41332 1.48530 1.75400 1.81281 2.05511 2.34035 2.50075 3.07054 3.42118 3.76539 3.79442 3.95561 4.11471 4.28589 4.33573 4.39585 4.46865 4.64104 4.70321 4.74813 4.85067 4.91465 4.95064 4.98870 5.03617 5.07096 5.14553 5.22515 5.30393 5.33534 5.50106 5.56072 5.63445 5.73844 5.84938 6.05739 6.56632 6.69473 6.77711 6.79726 7.27886 7.48918 8.85248 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019883 B = 0.005188 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.876698 B = 5395.271198 C = 5971.571427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 H 0.088 0.912 4 C -0.031 4.031 5 C -0.253 4.253 6 C 0.072 3.928 7 N -0.482 5.482 8 H 0.449 0.551 9 N -0.326 5.326 10 C 0.079 3.921 11 C -0.019 4.019 12 H 0.127 0.873 13 C 0.508 3.492 14 O -0.591 6.591 15 N -0.610 5.610 16 C 0.074 3.926 17 C 0.260 3.740 18 C -0.542 4.542 19 H 0.057 0.943 20 C 0.005 3.995 21 N -0.931 5.931 22 Si 0.971 3.029 23 H -0.255 1.255 24 H -0.279 1.279 25 H -0.278 1.278 26 C -0.095 4.095 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.049 0.951 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.224 0.776 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.023 0.977 37 H -0.010 1.010 38 H 0.267 0.733 39 H 0.044 0.956 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 12.556 19.011 24.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 H 0.106 0.894 4 C -0.069 4.069 5 C -0.264 4.264 6 C -0.074 4.074 7 N -0.192 5.192 8 H 0.295 0.705 9 N -0.148 5.148 10 C -0.089 4.089 11 C -0.042 4.042 12 H 0.145 0.855 13 C 0.296 3.704 14 O -0.471 6.471 15 N -0.341 5.341 16 C -0.068 4.068 17 C 0.139 3.861 18 C -0.580 4.580 19 H 0.076 0.924 20 C -0.194 4.194 21 N -0.571 5.571 22 Si 0.794 3.206 23 H -0.180 1.180 24 H -0.204 1.204 25 H -0.203 1.203 26 C -0.134 4.134 27 H 0.095 0.905 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.241 0.759 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.009 0.991 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.952 11.844 18.481 23.025 hybrid contribution -0.051 -1.177 -0.355 1.231 sum -7.003 10.667 18.126 22.167 Atomic orbital electron populations 1.21801 0.93073 1.02071 1.03018 1.21134 0.96689 0.99683 0.92286 0.89393 1.20127 0.87275 1.00762 0.98706 1.20485 0.98933 1.15751 0.91273 1.22758 0.84205 0.99571 1.00866 1.46400 1.10020 1.57545 1.05209 0.70518 1.77055 1.19887 1.23213 0.94674 1.21900 0.91138 0.99773 0.96099 1.19964 0.96913 1.00241 0.87101 0.85497 1.20973 0.78442 0.87141 0.83888 1.90625 1.48274 1.25233 1.83015 1.48140 1.63687 1.16008 1.06305 1.22018 1.00360 0.81259 1.03179 1.18731 0.94517 0.88439 0.84458 1.21674 0.95264 1.22227 1.18858 0.92438 1.25928 0.99106 0.97777 0.96554 1.70065 1.23857 1.36046 1.27132 0.85428 0.78974 0.78487 0.77691 1.17964 1.20380 1.20336 1.21622 0.89793 1.01075 1.00897 0.90458 0.91953 0.93219 0.88106 0.91549 0.75942 0.91641 0.90903 0.88370 0.95936 0.99145 0.92422 0.93731 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.15 71.98 0.66 -1.37 16 2 C -0.08 -1.46 2.66 -10.66 -0.03 -1.49 16 3 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 4 C -0.03 -0.56 5.57 30.03 0.17 -0.39 16 5 C -0.25 -6.44 5.89 -20.10 -0.12 -6.55 16 6 C 0.07 1.46 11.95 83.33 1.00 2.46 16 7 N -0.48 -12.39 7.37 -57.88 -0.43 -12.82 16 8 H 0.45 8.30 8.96 -213.18 -1.91 6.39 16 9 N -0.33 -12.20 12.32 -47.14 -0.58 -12.78 16 10 C 0.08 2.72 5.95 43.44 0.26 2.98 16 11 C -0.02 -0.64 2.03 -12.08 -0.02 -0.66 16 12 H 0.13 3.46 6.58 -2.39 -0.02 3.45 16 13 C 0.51 23.68 6.71 87.66 0.59 24.27 16 14 O -0.59 -34.48 15.65 -3.03 -0.05 -34.53 16 15 N -0.61 -28.13 2.86 -851.13 -2.43 -30.56 16 16 C 0.07 2.36 10.00 127.77 1.28 3.64 16 17 C 0.26 14.99 5.20 85.64 0.45 15.44 16 18 C -0.54 -32.37 9.39 25.60 0.24 -32.13 16 19 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 20 C 0.01 0.30 5.46 84.66 0.46 0.76 16 21 N -0.93 -58.43 13.29 21.45 0.28 -58.15 16 22 Si 0.97 45.87 29.54 68.60 2.03 47.90 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 25 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 26 C -0.10 -2.60 4.37 30.73 0.13 -2.46 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.78 8.14 -2.38 -0.02 0.77 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 35 H 0.10 2.35 5.43 -2.39 -0.01 2.34 16 36 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 37 H -0.01 -0.65 7.37 -2.39 -0.02 -0.66 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.04 1.48 8.08 -2.38 -0.02 1.46 16 40 H 0.09 2.16 7.31 -2.39 -0.02 2.15 16 Total: -1.00 -87.42 327.67 3.02 -84.40 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.86 Total: 12.04 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.06 Total: 4.49 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -3.15 Total: -114.31 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.05 Total: -34.53 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -87.42 3.02 -84.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857844935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.545 kcal (2) G-P(sol) polarization free energy of solvation -87.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds