Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.70891 * 2 1 4 4 C 1.53320 * 109.67774 * 239.46216 * 2 1 3 5 5 C 1.52724 * 108.41189 * 170.46852 * 4 2 1 6 6 C 1.50639 * 110.59970 * 51.10741 * 5 4 2 7 7 C 1.38930 * 117.73136 * 162.37124 * 6 5 4 8 8 C 1.37888 * 120.58151 * 179.34589 * 7 6 5 9 9 C 1.38485 * 119.74776 * 0.02562 * 8 7 6 10 10 F 1.35101 * 120.14218 * 180.16745 * 9 8 7 11 11 C 1.38153 * 119.71649 * 0.14753 * 9 8 7 12 12 C 1.37677 * 122.55222 * 341.99701 * 6 5 4 13 13 C 1.50644 * 122.55206 * 1.13792 * 12 6 5 14 14 H 1.09001 * 109.25302 * 221.64864 * 13 12 6 15 15 N 1.46897 * 109.25193 * 102.18151 * 13 12 6 16 16 C 1.46897 * 110.99771 * 128.35532 * 15 13 12 17 17 C 1.53006 * 109.47123 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47295 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99828 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00064 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99679 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46758 * 120.00311 * 22 20 18 25 25 H 1.48498 * 109.47110 * 240.00036 * 22 20 18 26 26 H 1.09000 * 109.46564 * 293.58888 * 1 2 3 27 27 H 1.09001 * 109.46564 * 53.58222 * 1 2 3 28 28 H 1.08997 * 109.47103 * 173.58700 * 1 2 3 29 29 H 1.09006 * 109.67912 * 290.19362 * 4 2 1 30 30 H 1.08992 * 109.68036 * 50.69957 * 4 2 1 31 31 H 1.09007 * 109.24714 * 290.82446 * 5 4 2 32 32 H 1.08996 * 109.25582 * 171.39626 * 5 4 2 33 33 H 1.08003 * 119.70879 * 359.06306 * 7 6 5 34 34 H 1.08005 * 120.12553 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.73822 * 179.97438 * 11 9 8 36 36 H 1.00900 * 110.99583 * 252.30720 * 15 13 12 37 37 H 1.08996 * 109.47259 * 299.99513 * 16 15 13 38 38 H 1.09005 * 109.47355 * 59.99963 * 16 15 13 39 39 H 1.08996 * 109.47084 * 300.00145 * 17 16 15 40 40 H 1.08999 * 109.46856 * 59.99685 * 17 16 15 41 41 H 0.97002 * 120.00135 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5544 -0.5131 -1.3421 6 6 4.2256 -0.8488 -0.0360 7 6 5.5978 -1.0661 -0.0514 8 6 6.2740 -1.3639 1.1128 9 6 5.5800 -1.4478 2.3083 10 9 6.2351 -1.7357 3.4542 11 6 4.2150 -1.2354 2.3241 12 6 3.5340 -0.9374 1.1511 13 6 2.0443 -0.7306 1.2387 14 1 1.8151 -0.1393 2.1252 15 7 1.3793 -2.0364 1.3421 16 6 0.4541 -2.0670 2.4827 17 6 -0.2184 -3.4393 2.5571 18 6 -1.1671 -3.4710 3.7276 19 1 -1.2796 -2.5993 4.3553 20 6 -1.8924 -4.6124 3.9964 21 7 -1.7559 -5.6736 3.2318 22 14 -3.0678 -4.6519 5.4477 23 1 -3.0381 -3.3410 6.1446 24 1 -4.4449 -4.9227 4.9620 25 1 -2.6555 -5.7233 6.3896 26 1 -0.3632 0.4113 0.9418 27 1 -0.3632 0.6101 -0.8270 28 1 -0.3633 -1.0212 -0.1148 29 1 1.8363 -1.7995 -1.1544 30 1 1.5579 -0.3364 -2.1331 31 1 3.7496 0.5306 -1.5886 32 1 3.9600 -1.1496 -2.1285 33 1 6.1388 -1.0058 -0.9842 34 1 7.3407 -1.5319 1.0923 35 1 3.6734 -1.3012 3.2562 36 1 0.9028 -2.2683 0.4835 37 1 1.0067 -1.8824 3.4038 38 1 -0.3064 -1.2966 2.3545 39 1 -0.7710 -3.6236 1.6359 40 1 0.5418 -4.2099 2.6851 41 1 -2.2658 -6.4767 3.4211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866334804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = -44.451996 kcal Electronic energy + Delta-G solvation = -21510.660982 eV Core-core repulsion = 18303.487847 eV Total energy + Delta-G solvation = -3207.173135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.74797 -40.29828 -37.30828 -34.71815 -33.04114 -31.57422 -31.31181 -29.21096 -28.08935 -26.07086 -23.81074 -23.18066 -22.24077 -21.74688 -20.57612 -18.92987 -17.09495 -16.54116 -16.25065 -15.83116 -15.48748 -15.32122 -14.60866 -14.42688 -14.23710 -14.09161 -13.62132 -13.46870 -13.24712 -12.83875 -12.60588 -12.30613 -12.13199 -11.99340 -11.68505 -11.36391 -11.20872 -11.13630 -10.97091 -10.76163 -10.59686 -10.46843 -10.29711 -10.01590 -9.37496 -9.15486 -8.81047 -8.38267 -8.35873 -7.81266 -5.99913 -4.02443 1.23561 1.30925 3.31053 3.38612 3.42324 3.60069 4.30379 4.44332 4.55386 4.61593 4.74286 4.90448 4.91812 5.03497 5.07708 5.18904 5.36344 5.37592 5.44409 5.50942 5.63956 5.69243 5.73307 5.82259 5.89118 5.95928 6.05397 6.18554 6.21321 6.23526 6.31277 6.32756 6.42944 6.44783 6.68111 6.97119 6.99781 7.46334 7.72080 7.82112 7.95040 8.08388 8.43146 9.05081 9.61540 11.11524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.004520 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.316482 B = 6193.376297 C = 7281.660045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 H 0.074 0.926 4 C -0.117 4.117 5 C -0.075 4.075 6 C -0.085 4.085 7 C -0.098 4.098 8 C -0.159 4.159 9 C 0.089 3.911 10 F -0.144 7.144 11 C -0.131 4.131 12 C -0.020 4.020 13 C 0.124 3.876 14 H 0.076 0.924 15 N -0.681 5.681 16 C 0.066 3.934 17 C 0.025 3.975 18 C -0.520 4.520 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.340 0.660 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.025 0.975 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.367 12.784 -9.876 20.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 H 0.092 0.908 4 C -0.154 4.154 5 C -0.112 4.112 6 C -0.086 4.086 7 C -0.116 4.116 8 C -0.178 4.178 9 C 0.070 3.930 10 F -0.123 7.123 11 C -0.150 4.150 12 C -0.021 4.021 13 C 0.014 3.986 14 H 0.094 0.906 15 N -0.313 5.313 16 C -0.062 4.062 17 C -0.012 4.012 18 C -0.559 4.559 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.816 12.289 -9.493 20.135 hybrid contribution -1.169 0.229 0.801 1.436 sum 11.647 12.518 -8.692 19.181 Atomic orbital electron populations 1.21894 0.94461 1.02610 1.01958 1.21658 0.96095 0.99755 0.95483 0.90765 1.21627 0.94638 1.01640 0.97509 1.20418 0.95365 1.01472 0.93963 1.19657 0.93363 1.00666 0.94875 1.20919 0.93704 0.99506 0.97519 1.20970 1.00516 1.04575 0.91694 1.17609 0.90758 1.02618 0.82005 1.91482 1.81233 1.91173 1.48377 1.21159 0.92138 1.01567 1.00171 1.19443 0.95355 0.96063 0.91227 1.20395 0.89473 0.91241 0.97489 0.90570 1.60597 1.35763 1.26654 1.08326 1.22290 0.92280 1.00440 0.91211 1.19062 0.94910 0.90489 0.96733 1.21201 1.23466 0.98629 1.12629 0.92746 1.24992 0.97101 0.95661 0.96546 1.69979 1.41657 1.03080 1.38490 0.86552 0.80807 0.78031 0.82700 1.19776 1.21047 1.20980 0.92305 0.92499 0.91882 0.90726 0.91401 0.90837 0.90750 0.85547 0.85240 0.84912 0.83854 0.92530 0.96235 0.96874 0.95707 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.08 37.16 0.30 -1.50 16 2 C -0.11 -1.26 2.51 -90.59 -0.23 -1.49 16 3 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 4 C -0.12 -1.21 5.19 -26.71 -0.14 -1.35 16 5 C -0.08 -0.72 5.67 -28.05 -0.16 -0.88 16 6 C -0.08 -1.02 5.74 -104.60 -0.60 -1.62 16 7 C -0.10 -1.08 9.60 -39.45 -0.38 -1.46 16 8 C -0.16 -1.89 10.03 -39.62 -0.40 -2.29 16 9 C 0.09 1.27 7.30 -39.52 -0.29 0.98 16 10 F -0.14 -2.16 17.27 2.25 0.04 -2.12 16 11 C -0.13 -1.95 9.59 -39.38 -0.38 -2.33 16 12 C -0.02 -0.27 5.31 -104.62 -0.56 -0.83 16 13 C 0.12 1.75 2.19 -69.03 -0.15 1.60 16 14 H 0.08 1.10 7.53 -51.93 -0.39 0.71 16 15 N -0.68 -11.66 5.95 -108.13 -0.64 -12.31 16 16 C 0.07 1.34 5.10 -3.82 -0.02 1.32 16 17 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 18 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 19 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.06 0.74 7.63 -51.93 -0.40 0.34 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.84 6.66 -51.93 -0.35 0.49 16 29 H 0.07 0.89 6.73 -51.93 -0.35 0.54 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 33 H 0.13 1.03 8.05 -52.48 -0.42 0.61 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.13 2.03 8.05 -52.49 -0.42 1.61 16 36 H 0.34 5.67 5.29 -39.29 -0.21 5.46 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.38 7.03 -51.93 -0.37 0.02 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 329.62 15.07 4.97 4.97 Total: -1.00 -30.25 329.62 -9.72 -39.96 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.24 Total: 1.79 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -3.55 Total: -22.76 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.09 Total: -38.51 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.25 -9.72 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866334804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.490 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds