Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.70891 * 2 1 4 4 C 1.53320 * 109.67774 * 239.46216 * 2 1 3 5 5 C 1.52724 * 108.41189 * 170.46852 * 4 2 1 6 6 C 1.50639 * 110.59970 * 51.10741 * 5 4 2 7 7 C 1.38930 * 117.73136 * 162.37124 * 6 5 4 8 8 C 1.37888 * 120.58151 * 179.34589 * 7 6 5 9 9 C 1.38485 * 119.74776 * 0.02562 * 8 7 6 10 10 F 1.35101 * 120.14218 * 180.16745 * 9 8 7 11 11 C 1.38153 * 119.71649 * 0.14753 * 9 8 7 12 12 C 1.37677 * 122.55222 * 341.99701 * 6 5 4 13 13 C 1.50644 * 122.55206 * 1.13792 * 12 6 5 14 14 H 1.09001 * 109.25302 * 221.64864 * 13 12 6 15 15 N 1.46897 * 109.25193 * 102.18151 * 13 12 6 16 16 C 1.46897 * 110.99771 * 128.35532 * 15 13 12 17 17 C 1.53006 * 109.47123 * 179.97438 * 16 15 13 18 18 C 1.50701 * 109.47295 * 179.97438 * 17 16 15 19 19 H 1.08007 * 119.99828 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31506 * 120.00064 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99679 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47233 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46758 * 120.00311 * 22 20 18 25 25 H 1.48498 * 109.47110 * 240.00036 * 22 20 18 26 26 H 1.09000 * 109.46564 * 293.58888 * 1 2 3 27 27 H 1.09001 * 109.46564 * 53.58222 * 1 2 3 28 28 H 1.08997 * 109.47103 * 173.58700 * 1 2 3 29 29 H 1.09006 * 109.67912 * 290.19362 * 4 2 1 30 30 H 1.08992 * 109.68036 * 50.69957 * 4 2 1 31 31 H 1.09007 * 109.24714 * 290.82446 * 5 4 2 32 32 H 1.08996 * 109.25582 * 171.39626 * 5 4 2 33 33 H 1.08003 * 119.70879 * 359.06306 * 7 6 5 34 34 H 1.08005 * 120.12553 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.73822 * 179.97438 * 11 9 8 36 36 H 1.00900 * 110.99583 * 252.30720 * 15 13 12 37 37 H 1.08996 * 109.47259 * 299.99513 * 16 15 13 38 38 H 1.09005 * 109.47355 * 59.99963 * 16 15 13 39 39 H 1.08996 * 109.47084 * 300.00145 * 17 16 15 40 40 H 1.08999 * 109.46856 * 59.99685 * 17 16 15 41 41 H 0.97002 * 120.00135 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0464 -0.7335 -1.2434 5 6 3.5544 -0.5131 -1.3421 6 6 4.2256 -0.8488 -0.0360 7 6 5.5978 -1.0661 -0.0514 8 6 6.2740 -1.3639 1.1128 9 6 5.5800 -1.4478 2.3083 10 9 6.2351 -1.7357 3.4542 11 6 4.2150 -1.2354 2.3241 12 6 3.5340 -0.9374 1.1511 13 6 2.0443 -0.7306 1.2387 14 1 1.8151 -0.1393 2.1252 15 7 1.3793 -2.0364 1.3421 16 6 0.4541 -2.0670 2.4827 17 6 -0.2184 -3.4393 2.5571 18 6 -1.1671 -3.4710 3.7276 19 1 -1.2796 -2.5993 4.3553 20 6 -1.8924 -4.6124 3.9964 21 7 -1.7559 -5.6736 3.2318 22 14 -3.0678 -4.6519 5.4477 23 1 -3.0381 -3.3410 6.1446 24 1 -4.4449 -4.9227 4.9620 25 1 -2.6555 -5.7233 6.3896 26 1 -0.3632 0.4113 0.9418 27 1 -0.3632 0.6101 -0.8270 28 1 -0.3633 -1.0212 -0.1148 29 1 1.8363 -1.7995 -1.1544 30 1 1.5579 -0.3364 -2.1331 31 1 3.7496 0.5306 -1.5886 32 1 3.9600 -1.1496 -2.1285 33 1 6.1388 -1.0058 -0.9842 34 1 7.3407 -1.5319 1.0923 35 1 3.6734 -1.3012 3.2562 36 1 0.9028 -2.2683 0.4835 37 1 1.0067 -1.8824 3.4038 38 1 -0.3064 -1.2966 2.3545 39 1 -0.7710 -3.6236 1.6359 40 1 0.5418 -4.2099 2.6851 41 1 -2.2658 -6.4767 3.4211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866334804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = -60.968572 kcal Electronic energy + Delta-G solvation = -21511.377195 eV Core-core repulsion = 18303.487847 eV Total energy + Delta-G solvation = -3207.889348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.86489 -41.30515 -38.42169 -36.17149 -34.80226 -32.98727 -32.26988 -30.72713 -29.26228 -27.37043 -25.61262 -24.13434 -23.25996 -22.75320 -22.38808 -19.94743 -18.54853 -18.06259 -17.58711 -16.91715 -16.66382 -16.55447 -16.36666 -15.73835 -15.33509 -15.13419 -14.66168 -14.63088 -14.54776 -14.31492 -13.99781 -13.59169 -13.23046 -13.12290 -13.05154 -12.89161 -12.65732 -12.50871 -12.27083 -12.17734 -12.06724 -11.73558 -11.41575 -11.38398 -11.31457 -11.05212 -10.58516 -9.84836 -9.37176 -9.22615 -8.21647 -6.33006 0.23324 0.31374 1.38583 1.39412 1.52430 2.38907 2.59722 3.12018 3.28056 3.49875 3.63913 3.71222 3.94394 3.99960 4.02858 4.17782 4.21908 4.38815 4.44823 4.52913 4.62098 4.68089 4.71812 4.77027 4.87216 4.97949 5.02195 5.06888 5.12444 5.15761 5.22971 5.27928 5.32436 5.41020 5.44952 5.51495 5.64518 5.71258 5.78341 6.01833 6.13920 6.27746 6.57588 6.84522 7.36412 8.90735 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017636 B = 0.004520 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.316482 B = 6193.376297 C = 7281.660045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.093 0.907 4 C -0.115 4.115 5 C -0.073 4.073 6 C -0.083 4.083 7 C -0.091 4.091 8 C -0.154 4.154 9 C 0.064 3.936 10 F -0.155 7.155 11 C -0.154 4.154 12 C -0.038 4.038 13 C 0.125 3.875 14 H 0.065 0.935 15 N -0.687 5.687 16 C 0.088 3.912 17 C 0.034 3.966 18 C -0.543 4.543 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.279 1.279 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.343 0.657 37 H 0.048 0.952 38 H 0.027 0.973 39 H -0.007 1.007 40 H -0.012 1.012 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.991 14.391 -11.526 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 H 0.111 0.889 4 C -0.153 4.153 5 C -0.109 4.109 6 C -0.084 4.084 7 C -0.109 4.109 8 C -0.172 4.172 9 C 0.045 3.955 10 F -0.134 7.134 11 C -0.174 4.174 12 C -0.039 4.039 13 C 0.015 3.985 14 H 0.083 0.917 15 N -0.320 5.320 16 C -0.041 4.041 17 C -0.003 4.003 18 C -0.581 4.581 19 H 0.077 0.923 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.205 1.205 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.183 0.817 34 H 0.172 0.828 35 H 0.130 0.870 36 H 0.164 0.836 37 H 0.066 0.934 38 H 0.045 0.955 39 H 0.011 0.989 40 H 0.007 0.993 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.450 13.915 -11.150 22.335 hybrid contribution -1.307 -0.275 1.265 1.840 sum 12.143 13.640 -9.885 20.766 Atomic orbital electron populations 1.21877 0.94917 1.01675 1.02275 1.21620 0.95587 1.00422 0.94588 0.88884 1.21629 0.95749 1.00263 0.97625 1.20515 0.94215 1.03394 0.92801 1.20048 0.94106 0.99157 0.95108 1.21360 0.93333 0.97595 0.98565 1.21318 1.01768 1.03240 0.90919 1.17886 0.90751 1.04114 0.82707 1.91444 1.81316 1.91469 1.49195 1.21171 0.92849 1.03286 1.00086 1.19465 0.95013 0.97561 0.91887 1.20423 0.89688 0.89603 0.98744 0.91704 1.60475 1.34778 1.29403 1.07331 1.21848 0.92568 0.97244 0.92425 1.18892 0.93720 0.92481 0.95239 1.21624 1.24042 0.99043 1.13404 0.92280 1.25950 0.98927 0.95137 0.99577 1.70111 1.42800 1.03812 1.40428 0.85396 0.78358 0.78452 0.78814 1.18615 1.20109 1.20508 0.93563 0.90099 0.93891 0.92785 0.89021 0.88307 0.88760 0.81657 0.82787 0.87011 0.83584 0.93353 0.95534 0.98875 0.99314 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.08 71.98 0.58 -2.82 16 2 C -0.10 -2.18 2.51 -10.77 -0.03 -2.21 16 3 H 0.09 1.68 8.10 -2.39 -0.02 1.66 16 4 C -0.12 -2.07 5.19 30.61 0.16 -1.92 16 5 C -0.07 -1.10 5.67 29.74 0.17 -0.93 16 6 C -0.08 -1.79 5.74 -19.85 -0.11 -1.90 16 7 C -0.09 -1.68 9.60 22.35 0.21 -1.46 16 8 C -0.15 -3.36 10.03 22.25 0.22 -3.13 16 9 C 0.06 1.85 7.30 22.31 0.16 2.01 16 10 F -0.16 -4.81 17.27 44.97 0.78 -4.03 16 11 C -0.15 -4.80 9.59 22.40 0.21 -4.58 16 12 C -0.04 -1.05 5.31 -19.86 -0.11 -1.16 16 13 C 0.12 3.54 2.19 44.06 0.10 3.64 16 14 H 0.06 1.95 7.53 -2.39 -0.02 1.93 16 15 N -0.69 -24.48 5.95 -496.01 -2.95 -27.43 16 16 C 0.09 3.74 5.10 86.31 0.44 4.18 16 17 C 0.03 1.85 5.23 29.85 0.16 2.01 16 18 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 19 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 20 C 0.00 0.12 5.46 84.66 0.46 0.58 16 21 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 22 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H 0.05 1.15 7.63 -2.39 -0.02 1.13 16 27 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.14 6.66 -2.39 -0.02 1.12 16 29 H 0.05 1.21 6.73 -2.38 -0.02 1.20 16 30 H 0.09 1.26 8.13 -2.39 -0.02 1.24 16 31 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 33 H 0.17 1.78 8.05 -2.91 -0.02 1.76 16 34 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.11 3.78 8.05 -2.91 -0.02 3.75 16 36 H 0.34 11.84 5.29 -89.69 -0.47 11.37 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.08 7.03 -2.38 -0.02 1.07 16 39 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 40 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -67.95 329.62 3.55 -64.41 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.54 Total: 16.40 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 2.87 Total: -38.93 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.67 Total: -84.78 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.78 Total: -4.03 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.95 3.55 -64.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866334804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.440 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds