Wall clock time and date at job start Mon Mar 30 2020 02:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.67736 * 2 1 4 4 C 1.53329 * 109.67992 * 120.51681 * 2 1 3 5 5 C 1.52733 * 108.37989 * 49.86959 * 4 2 1 6 6 C 1.50647 * 110.59169 * 51.10072 * 5 4 2 7 7 C 1.38931 * 117.72134 * 162.50805 * 6 5 4 8 8 C 1.37887 * 120.58028 * 179.73965 * 7 6 5 9 9 C 1.38487 * 119.74803 * 0.13563 * 8 7 6 10 10 F 1.35098 * 120.14527 * 179.83482 * 9 8 7 11 11 C 1.38157 * 119.71088 * 359.59910 * 9 8 7 12 12 C 1.37679 * 122.55329 * 342.28830 * 6 5 4 13 13 C 1.50635 * 122.56650 * 0.61555 * 12 6 5 14 14 H 1.09007 * 109.25177 * 102.58433 * 13 12 6 15 15 N 1.46901 * 109.22484 * 222.02607 * 13 12 6 16 16 C 1.46892 * 110.99992 * 207.28607 * 15 13 12 17 17 C 1.53006 * 109.47058 * 185.14923 * 16 15 13 18 18 C 1.50701 * 109.47274 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99744 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00002 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99734 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99790 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47123 * 60.00352 * 22 20 18 24 24 H 1.48508 * 109.46618 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47227 * 300.00007 * 22 20 18 26 26 H 1.08992 * 109.47531 * 299.48029 * 1 2 3 27 27 H 1.09007 * 109.47131 * 59.48173 * 1 2 3 28 28 H 1.09000 * 109.47196 * 179.47929 * 1 2 3 29 29 H 1.08997 * 109.68182 * 290.14904 * 4 2 1 30 30 H 1.08998 * 109.71336 * 169.60414 * 4 2 1 31 31 H 1.08999 * 109.25528 * 290.81471 * 5 4 2 32 32 H 1.08996 * 109.22491 * 171.36812 * 5 4 2 33 33 H 1.08002 * 119.70839 * 359.71512 * 7 6 5 34 34 H 1.08006 * 120.12465 * 179.85969 * 8 7 6 35 35 H 1.08001 * 119.73364 * 180.27797 * 11 9 8 36 36 H 1.00900 * 110.99898 * 331.24060 * 15 13 12 37 37 H 1.09001 * 109.47601 * 305.14619 * 16 15 13 38 38 H 1.08995 * 109.47569 * 65.15023 * 16 15 13 39 39 H 1.09001 * 109.46666 * 300.00268 * 17 16 15 40 40 H 1.09004 * 109.47072 * 59.99580 * 17 16 15 41 41 H 0.97000 * 119.99929 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0263 0.0000 4 6 2.0464 -0.7331 1.2437 5 6 1.3289 -2.0778 1.3427 6 6 1.4177 -2.8231 0.0365 7 6 1.1553 -4.1873 0.0517 8 6 1.2144 -4.9260 -1.1111 9 6 1.5409 -4.3039 -2.3046 10 9 1.6044 -5.0206 -3.4481 11 6 1.7965 -2.9463 -2.3216 12 6 1.7405 -2.2031 -1.1497 13 6 2.0452 -0.7306 -1.2383 14 1 3.1235 -0.5906 -1.3156 15 7 1.3978 -0.1738 -2.4337 16 6 2.1289 0.9996 -2.9300 17 6 1.3576 1.6266 -4.0932 18 6 2.1074 2.8308 -4.6021 19 1 3.0408 3.1197 -4.1421 20 6 1.6021 3.5630 -5.6555 21 7 0.4662 3.2101 -6.2166 22 14 2.5318 5.0552 -6.2866 23 1 3.8788 4.6385 -6.7527 24 1 1.7831 5.6637 -7.4156 25 1 2.6722 6.0499 -5.1930 26 1 -0.3634 0.5057 0.8945 27 1 -0.3634 0.5219 -0.8854 28 1 -0.3633 -1.0276 -0.0093 29 1 1.8371 -0.1391 2.1333 30 1 3.1205 -0.8958 1.1552 31 1 0.2808 -1.9087 1.5894 32 1 1.7914 -2.6744 2.1289 33 1 0.9032 -4.6735 0.9825 34 1 1.0113 -5.9866 -1.0905 35 1 2.0467 -2.4600 -3.2528 36 1 1.3058 -0.8740 -3.1543 37 1 2.2323 1.7297 -2.1272 38 1 3.1174 0.6938 -3.2724 39 1 1.2542 0.8965 -4.8960 40 1 0.3690 1.9325 -3.7508 41 1 0.1106 3.7254 -6.9574 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866334805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:22 Heat of formation + Delta-G solvation = -39.480125 kcal Electronic energy + Delta-G solvation = -21518.159457 eV Core-core repulsion = 18311.201918 eV Total energy + Delta-G solvation = -3206.957539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.88669 -40.50493 -36.98132 -35.29965 -33.14894 -31.51116 -30.80711 -29.26342 -27.93938 -26.29261 -24.18677 -23.34904 -22.34767 -21.59286 -20.39550 -18.56679 -17.32976 -16.66578 -16.26803 -15.81601 -15.59280 -15.35023 -14.77015 -14.64270 -14.35292 -14.08602 -13.78767 -13.22051 -13.14068 -12.94391 -12.70546 -12.27954 -12.01082 -11.85882 -11.72194 -11.33190 -11.31816 -11.04133 -10.91403 -10.67609 -10.61538 -10.34330 -10.19940 -9.95681 -9.36655 -9.19150 -9.01999 -8.53798 -8.34040 -7.79048 -5.98948 -4.01764 1.08141 1.12682 3.33699 3.38235 3.40277 3.45701 4.18058 4.41993 4.50211 4.52880 4.66200 4.80010 4.94348 4.99623 5.13093 5.13360 5.36906 5.37020 5.43230 5.55289 5.70429 5.74127 5.79973 5.83365 5.89603 6.01546 6.05691 6.17036 6.17418 6.25320 6.32463 6.42361 6.48701 6.56770 6.81781 6.83431 6.97948 7.45360 7.71901 7.79328 7.93733 8.08602 8.43544 9.05363 9.61986 11.12367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020397 B = 0.004223 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.454259 B = 6629.238174 C = 7622.536872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.078 4.078 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.080 4.080 7 C -0.094 4.094 8 C -0.158 4.158 9 C 0.097 3.903 10 F -0.141 7.141 11 C -0.153 4.153 12 C -0.035 4.035 13 C 0.127 3.873 14 H 0.055 0.945 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.028 3.972 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.337 0.663 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.013 0.987 40 H 0.026 0.974 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -14.463 15.747 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.115 4.115 6 C -0.080 4.080 7 C -0.112 4.112 8 C -0.177 4.177 9 C 0.077 3.923 10 F -0.120 7.120 11 C -0.172 4.172 12 C -0.036 4.036 13 C 0.017 3.983 14 H 0.072 0.928 15 N -0.314 5.314 16 C -0.063 4.063 17 C -0.010 4.010 18 C -0.562 4.562 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 H 0.060 0.940 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.031 0.969 40 H 0.044 0.956 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.208 -14.057 15.891 21.250 hybrid contribution 1.280 0.193 -1.210 1.772 sum 2.489 -13.864 14.682 20.346 Atomic orbital electron populations 1.21714 0.94144 1.01591 1.01874 1.21070 0.97329 0.98979 0.92305 0.90614 1.21630 0.99835 0.95549 0.98500 1.20499 1.01833 0.95808 0.93397 1.19651 0.99779 0.93547 0.95046 1.20979 0.99279 0.93300 0.97689 1.21014 1.04150 1.00867 0.91665 1.17548 1.02774 0.89780 0.82155 1.91499 1.94041 1.77965 1.48482 1.21168 1.03760 0.92395 0.99895 1.19590 0.96740 0.95591 0.91643 1.20396 0.96517 0.88059 0.93334 0.92751 1.60780 1.52799 1.10392 1.07455 1.22243 0.94636 0.90505 0.98927 1.19035 0.95970 0.94832 0.91133 1.21134 1.07295 1.11645 1.16094 0.92861 1.24991 0.95002 0.97665 0.96601 1.69963 1.19284 1.39872 1.24056 0.86662 0.79851 0.83065 0.78423 1.20313 1.21268 1.20229 0.94009 0.90524 0.93098 0.91219 0.91894 0.89996 0.91063 0.85262 0.84994 0.84717 0.84282 0.92154 0.96646 0.96898 0.95607 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.16 37.16 0.30 -1.51 16 2 C -0.08 -1.00 2.87 -90.59 -0.26 -1.26 16 3 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 4 C -0.12 -1.17 5.64 -26.70 -0.15 -1.33 16 5 C -0.08 -0.72 5.07 -28.05 -0.14 -0.87 16 6 C -0.08 -0.89 5.02 -104.60 -0.52 -1.42 16 7 C -0.09 -0.94 9.60 -39.45 -0.38 -1.32 16 8 C -0.16 -1.71 10.03 -39.62 -0.40 -2.11 16 9 C 0.10 1.26 7.30 -39.52 -0.29 0.97 16 10 F -0.14 -1.97 17.27 2.25 0.04 -1.93 16 11 C -0.15 -2.10 8.81 -39.37 -0.35 -2.45 16 12 C -0.03 -0.46 5.11 -104.62 -0.54 -1.00 16 13 C 0.13 1.82 2.22 -69.03 -0.15 1.66 16 14 H 0.05 0.80 7.82 -51.92 -0.41 0.40 16 15 N -0.68 -11.83 5.17 -108.13 -0.56 -12.39 16 16 C 0.06 1.33 5.38 -3.83 -0.02 1.31 16 17 C 0.03 0.72 5.28 -27.88 -0.15 0.57 16 18 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.24 7.44 -51.92 -0.39 0.85 16 28 H 0.05 0.66 5.58 -51.93 -0.29 0.37 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.08 0.73 6.82 -51.93 -0.35 0.37 16 32 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.13 0.93 8.05 -52.49 -0.42 0.50 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.14 1.89 6.56 -52.49 -0.34 1.54 16 36 H 0.34 5.82 6.09 -39.29 -0.24 5.58 16 37 H 0.06 1.23 7.57 -51.93 -0.39 0.84 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 326.29 15.07 4.92 4.92 Total: -1.00 -29.98 326.29 -9.49 -39.48 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -6.15 Total: 1.74 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -3.45 Total: -22.25 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.18 Total: -38.64 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.98 -9.49 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866334805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.003 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds