Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70530 * 2 1 4 4 C 1.53328 * 109.68087 * 120.53663 * 2 1 3 5 5 C 1.52733 * 108.38219 * 189.59503 * 4 2 1 6 6 C 1.50640 * 110.59211 * 308.88274 * 5 4 2 7 7 C 1.38928 * 117.72467 * 197.45643 * 6 5 4 8 8 C 1.37889 * 120.58364 * 180.58461 * 7 6 5 9 9 C 1.38492 * 119.74321 * 359.97212 * 8 7 6 10 10 F 1.35098 * 120.13874 * 179.86010 * 9 8 7 11 11 C 1.38152 * 119.71681 * 359.87791 * 9 8 7 12 12 C 1.37682 * 122.55169 * 17.79254 * 6 5 4 13 13 C 1.50632 * 122.56481 * 359.26871 * 12 6 5 14 14 H 1.08999 * 109.25728 * 257.52832 * 13 12 6 15 15 N 1.46905 * 109.25417 * 138.06091 * 13 12 6 16 16 C 1.46899 * 110.99629 * 301.12746 * 15 13 12 17 17 C 1.53005 * 109.46960 * 174.53156 * 16 15 13 18 18 C 1.50694 * 109.47303 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00316 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00460 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47522 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47093 * 330.00169 * 22 20 18 25 25 H 1.48505 * 109.47493 * 210.00213 * 22 20 18 26 26 H 1.09001 * 109.47247 * 180.53748 * 1 2 3 27 27 H 1.09005 * 109.47074 * 300.53368 * 1 2 3 28 28 H 1.08998 * 109.47434 * 60.53242 * 1 2 3 29 29 H 1.09004 * 109.68305 * 69.87556 * 4 2 1 30 30 H 1.08994 * 109.71591 * 309.33878 * 4 2 1 31 31 H 1.08989 * 109.25358 * 188.59099 * 5 4 2 32 32 H 1.09002 * 109.21709 * 69.14603 * 5 4 2 33 33 H 1.08001 * 119.70447 * 0.57915 * 7 6 5 34 34 H 1.08003 * 120.12576 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.73330 * 180.02562 * 11 9 8 36 36 H 1.00903 * 110.99441 * 65.07796 * 15 13 12 37 37 H 1.08995 * 109.47372 * 54.53248 * 16 15 13 38 38 H 1.09001 * 109.47234 * 294.53123 * 16 15 13 39 39 H 1.09004 * 109.46905 * 59.99693 * 17 16 15 40 40 H 1.09001 * 109.47121 * 300.00037 * 17 16 15 41 41 H 0.96994 * 120.00041 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0464 -0.7335 1.2435 5 6 3.5542 -0.5113 1.3423 6 6 4.2258 -0.8461 0.0361 7 6 5.5988 -1.0582 0.0510 8 6 6.2753 -1.3563 -1.1130 9 6 5.5806 -1.4458 -2.3077 10 9 6.2358 -1.7347 -3.4533 11 6 4.2149 -1.2382 -2.3231 12 6 3.5335 -0.9396 -1.1503 13 6 2.0443 -0.7306 -1.2387 14 1 1.5494 -1.6988 -1.3155 15 7 1.7371 0.0666 -2.4337 16 6 2.4183 1.3672 -2.3882 17 6 2.1860 2.1109 -3.7051 18 6 2.8843 3.4455 -3.6583 19 1 3.4387 3.7342 -2.7776 20 6 2.8164 4.2974 -4.7401 21 7 2.1425 3.9452 -5.8132 22 14 3.6825 5.9514 -4.6824 23 1 5.0662 5.8040 -5.2009 24 1 3.7287 6.4374 -3.2799 25 1 2.9413 6.9280 -5.5204 26 1 -0.3634 -1.0276 0.0096 27 1 -0.3633 0.5221 0.8852 28 1 -0.3634 0.5055 -0.8947 29 1 1.8375 -1.7996 1.1540 30 1 1.5578 -0.3372 2.1335 31 1 3.9605 -1.1473 2.1287 32 1 3.7477 0.5327 1.5886 33 1 6.1409 -0.9889 0.9825 34 1 7.3427 -1.5194 -1.0930 35 1 3.6728 -1.3083 -3.2545 36 1 1.9748 -0.4370 -3.2752 37 1 3.4873 1.2126 -2.2420 38 1 2.0202 1.9572 -1.5627 39 1 1.1170 2.2655 -3.8514 40 1 2.5841 1.5209 -4.5306 41 1 1.6930 3.0862 -5.8434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000866334806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = -47.624628 kcal Electronic energy + Delta-G solvation = -21949.493970 eV Core-core repulsion = 18742.183259 eV Total energy + Delta-G solvation = -3207.310711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.79262 -40.45621 -37.00816 -35.24899 -33.36473 -31.54627 -31.07004 -29.20470 -27.92933 -25.80853 -23.88861 -23.16025 -21.97086 -21.74693 -20.94253 -18.99786 -17.32679 -16.83831 -16.37794 -16.01737 -15.51781 -15.09850 -14.61630 -14.46895 -13.83112 -13.75640 -13.74602 -13.66341 -13.50795 -12.83309 -12.65605 -12.49559 -12.20798 -11.93949 -11.78569 -11.40631 -11.24548 -11.11087 -10.94613 -10.60376 -10.51055 -10.38181 -10.13269 -10.02037 -9.67737 -8.88636 -8.57337 -8.42538 -8.30062 -8.01660 -6.33672 -4.02271 1.16739 1.20160 3.44837 3.48465 3.53234 3.64156 4.23705 4.48030 4.56509 4.57670 4.66392 4.85540 4.95900 4.97497 5.06969 5.10879 5.39097 5.44124 5.45120 5.52436 5.66097 5.75695 5.78096 5.83268 5.88416 5.92392 6.08677 6.12141 6.16919 6.26183 6.28348 6.36176 6.47418 6.50334 6.55037 6.86929 6.91461 7.24300 7.49456 7.65825 7.79398 8.26562 8.49307 8.91679 9.69886 11.07530 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.005805 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.370228 B = 4822.516734 C = 5832.812774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.084 4.084 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.079 4.079 6 C -0.083 4.083 7 C -0.095 4.095 8 C -0.157 4.157 9 C 0.097 3.903 10 F -0.141 7.141 11 C -0.148 4.148 12 C -0.070 4.070 13 C 0.130 3.870 14 H 0.088 0.912 15 N -0.677 5.677 16 C 0.069 3.931 17 C 0.012 3.988 18 C -0.600 4.600 19 H 0.047 0.953 20 C 0.016 3.984 21 N -0.913 5.913 22 Si 1.070 2.930 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.284 1.284 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.335 0.665 37 H 0.023 0.977 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.002 0.998 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -12.981 14.859 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.152 4.152 5 C -0.116 4.116 6 C -0.084 4.084 7 C -0.113 4.113 8 C -0.176 4.176 9 C 0.078 3.922 10 F -0.120 7.120 11 C -0.167 4.167 12 C -0.072 4.072 13 C 0.019 3.981 14 H 0.106 0.894 15 N -0.307 5.307 16 C -0.059 4.059 17 C -0.026 4.026 18 C -0.639 4.639 19 H 0.065 0.935 20 C -0.188 4.188 21 N -0.549 5.549 22 Si 0.899 3.101 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.209 1.209 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.020 0.980 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.592 -11.353 14.173 18.343 hybrid contribution 1.041 -1.718 0.331 2.036 sum 3.633 -13.070 14.504 19.860 Atomic orbital electron populations 1.21691 0.94183 1.01302 1.02218 1.21176 0.96512 1.00088 0.92533 0.90138 1.21641 0.94524 1.00801 0.98270 1.20472 0.95491 1.02011 0.93619 1.19687 0.93409 1.00247 0.95069 1.20987 0.93736 0.98911 0.97674 1.21015 1.00595 1.04294 0.91652 1.17558 0.90577 1.01977 0.82067 1.91496 1.81183 1.90968 1.48306 1.21109 0.92926 1.02990 0.99678 1.20447 0.98156 0.96936 0.91683 1.20588 0.87738 0.97232 0.92542 0.89392 1.60912 1.61531 1.05306 1.02913 1.22079 0.94852 0.87915 1.01043 1.19209 0.96982 0.95126 0.91233 1.21987 1.35506 1.02653 1.03757 0.93478 1.25811 0.96679 1.03791 0.92533 1.70742 1.31168 1.23961 1.29071 0.83533 0.75985 0.75234 0.75394 1.21518 1.21499 1.20929 0.93307 0.93316 0.91035 0.91722 0.91162 0.90831 0.90422 0.85345 0.84992 0.85107 0.84584 0.95838 0.91905 0.96635 0.97953 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.11 37.16 0.34 -1.32 16 2 C -0.08 -1.08 2.09 -90.59 -0.19 -1.27 16 3 H 0.08 1.22 6.12 -51.93 -0.32 0.90 16 4 C -0.11 -1.16 5.28 -26.70 -0.14 -1.30 16 5 C -0.08 -0.81 5.67 -28.05 -0.16 -0.97 16 6 C -0.08 -1.06 5.74 -104.60 -0.60 -1.66 16 7 C -0.09 -1.13 9.60 -39.45 -0.38 -1.50 16 8 C -0.16 -2.03 10.03 -39.62 -0.40 -2.43 16 9 C 0.10 1.49 7.30 -39.52 -0.29 1.20 16 10 F -0.14 -2.28 17.27 2.25 0.04 -2.24 16 11 C -0.15 -2.28 8.30 -39.37 -0.33 -2.61 16 12 C -0.07 -1.01 4.25 -104.62 -0.44 -1.45 16 13 C 0.13 1.81 2.38 -69.03 -0.16 1.65 16 14 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 15 N -0.68 -11.55 5.91 -108.13 -0.64 -12.19 16 16 C 0.07 1.45 4.81 -3.82 -0.02 1.43 16 17 C 0.01 0.31 4.49 -27.88 -0.13 0.18 16 18 C -0.60 -17.49 9.11 -34.45 -0.31 -17.81 16 19 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 20 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 21 N -0.91 -28.54 13.65 55.43 0.76 -27.78 16 22 Si 1.07 25.96 29.90 -169.99 -5.08 20.88 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 1.03 7.88 -51.93 -0.41 0.62 16 29 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.12 -51.94 -0.42 0.18 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.13 1.15 8.05 -52.49 -0.42 0.73 16 34 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.13 2.01 6.58 -52.49 -0.35 1.66 16 36 H 0.34 5.63 7.09 -39.29 -0.28 5.35 16 37 H 0.02 0.52 6.29 -51.93 -0.33 0.19 16 38 H 0.06 1.35 6.46 -51.93 -0.34 1.01 16 39 H 0.02 0.43 8.01 -51.93 -0.42 0.01 16 40 H 0.00 0.06 8.01 -51.93 -0.42 -0.35 16 41 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 LS Contribution 326.07 15.07 4.91 4.91 Total: -1.00 -31.42 326.07 -9.46 -40.88 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.14 Total: 3.02 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -3.31 Total: -27.49 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.12 Total: -39.98 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.08 Total: 20.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.42 -9.46 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866334806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.741 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds