Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.70530 * 2 1 4 4 C 1.53328 * 109.68087 * 120.53663 * 2 1 3 5 5 C 1.52733 * 108.38219 * 189.59503 * 4 2 1 6 6 C 1.50640 * 110.59211 * 308.88274 * 5 4 2 7 7 C 1.38928 * 117.72467 * 197.45643 * 6 5 4 8 8 C 1.37889 * 120.58364 * 180.58461 * 7 6 5 9 9 C 1.38492 * 119.74321 * 359.97212 * 8 7 6 10 10 F 1.35098 * 120.13874 * 179.86010 * 9 8 7 11 11 C 1.38152 * 119.71681 * 359.87791 * 9 8 7 12 12 C 1.37682 * 122.55169 * 17.79254 * 6 5 4 13 13 C 1.50632 * 122.56481 * 359.26871 * 12 6 5 14 14 H 1.08999 * 109.25728 * 257.52832 * 13 12 6 15 15 N 1.46905 * 109.25417 * 138.06091 * 13 12 6 16 16 C 1.46899 * 110.99629 * 301.12746 * 15 13 12 17 17 C 1.53005 * 109.46960 * 174.53156 * 16 15 13 18 18 C 1.50694 * 109.47303 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99874 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00316 * 179.97438 * 18 17 16 21 21 N 1.31521 * 119.99874 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00460 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47522 * 89.99776 * 22 20 18 24 24 H 1.48504 * 109.47093 * 330.00169 * 22 20 18 25 25 H 1.48505 * 109.47493 * 210.00213 * 22 20 18 26 26 H 1.09001 * 109.47247 * 180.53748 * 1 2 3 27 27 H 1.09005 * 109.47074 * 300.53368 * 1 2 3 28 28 H 1.08998 * 109.47434 * 60.53242 * 1 2 3 29 29 H 1.09004 * 109.68305 * 69.87556 * 4 2 1 30 30 H 1.08994 * 109.71591 * 309.33878 * 4 2 1 31 31 H 1.08989 * 109.25358 * 188.59099 * 5 4 2 32 32 H 1.09002 * 109.21709 * 69.14603 * 5 4 2 33 33 H 1.08001 * 119.70447 * 0.57915 * 7 6 5 34 34 H 1.08003 * 120.12576 * 179.97438 * 8 7 6 35 35 H 1.07997 * 119.73330 * 180.02562 * 11 9 8 36 36 H 1.00903 * 110.99441 * 65.07796 * 15 13 12 37 37 H 1.08995 * 109.47372 * 54.53248 * 16 15 13 38 38 H 1.09001 * 109.47234 * 294.53123 * 16 15 13 39 39 H 1.09004 * 109.46905 * 59.99693 * 17 16 15 40 40 H 1.09001 * 109.47121 * 300.00037 * 17 16 15 41 41 H 0.96994 * 120.00041 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0464 -0.7335 1.2435 5 6 3.5542 -0.5113 1.3423 6 6 4.2258 -0.8461 0.0361 7 6 5.5988 -1.0582 0.0510 8 6 6.2753 -1.3563 -1.1130 9 6 5.5806 -1.4458 -2.3077 10 9 6.2358 -1.7347 -3.4533 11 6 4.2149 -1.2382 -2.3231 12 6 3.5335 -0.9396 -1.1503 13 6 2.0443 -0.7306 -1.2387 14 1 1.5494 -1.6988 -1.3155 15 7 1.7371 0.0666 -2.4337 16 6 2.4183 1.3672 -2.3882 17 6 2.1860 2.1109 -3.7051 18 6 2.8843 3.4455 -3.6583 19 1 3.4387 3.7342 -2.7776 20 6 2.8164 4.2974 -4.7401 21 7 2.1425 3.9452 -5.8132 22 14 3.6825 5.9514 -4.6824 23 1 5.0662 5.8040 -5.2009 24 1 3.7287 6.4374 -3.2799 25 1 2.9413 6.9280 -5.5204 26 1 -0.3634 -1.0276 0.0096 27 1 -0.3633 0.5221 0.8852 28 1 -0.3634 0.5055 -0.8947 29 1 1.8375 -1.7996 1.1540 30 1 1.5578 -0.3372 2.1335 31 1 3.9605 -1.1473 2.1287 32 1 3.7477 0.5327 1.5886 33 1 6.1409 -0.9889 0.9825 34 1 7.3427 -1.5194 -1.0930 35 1 3.6728 -1.3083 -3.2545 36 1 1.9748 -0.4370 -3.2752 37 1 3.4873 1.2126 -2.2420 38 1 2.0202 1.9572 -1.5627 39 1 1.1170 2.2655 -3.8514 40 1 2.5841 1.5209 -4.5306 41 1 1.6930 3.0862 -5.8434 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866334806.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = -65.517976 kcal Electronic energy + Delta-G solvation = -21950.269883 eV Core-core repulsion = 18742.183259 eV Total energy + Delta-G solvation = -3208.086625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.98754 -41.52575 -38.18074 -36.63128 -35.27059 -32.80809 -32.27560 -30.67198 -29.15586 -27.10663 -25.72575 -24.17448 -23.46063 -23.00296 -22.22444 -20.10943 -19.01767 -18.42720 -17.50259 -17.23976 -16.72326 -16.35101 -15.92546 -15.79706 -15.60548 -15.18496 -14.91740 -14.77153 -14.71344 -14.25429 -13.91261 -13.72953 -13.53715 -13.38899 -12.95397 -12.79041 -12.72737 -12.30552 -12.24813 -12.08888 -12.00189 -11.81550 -11.44644 -11.42202 -11.22507 -10.77761 -10.58379 -9.94547 -9.54649 -9.41908 -8.73175 -6.43267 0.10214 0.15796 1.48556 1.58233 1.76136 2.48913 2.53037 3.10622 3.12649 3.31982 3.56246 3.63039 3.84113 3.90239 4.03549 4.10294 4.16214 4.34993 4.39255 4.45792 4.55552 4.61601 4.69885 4.80299 4.82724 4.87591 4.92954 5.03916 5.05757 5.10978 5.17247 5.19828 5.23588 5.34563 5.39865 5.46699 5.51176 5.55430 5.87553 5.89532 6.10694 6.15009 6.32932 6.55510 7.39003 8.68035 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.005805 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.370228 B = 4822.516734 C = 5832.812774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.055 0.945 4 C -0.107 4.107 5 C -0.079 4.079 6 C -0.084 4.084 7 C -0.089 4.089 8 C -0.155 4.155 9 C 0.067 3.933 10 F -0.154 7.154 11 C -0.169 4.169 12 C -0.085 4.085 13 C 0.131 3.869 14 H 0.103 0.897 15 N -0.678 5.678 16 C 0.097 3.903 17 C 0.016 3.984 18 C -0.618 4.618 19 H 0.048 0.952 20 C -0.038 4.038 21 N -0.936 5.936 22 Si 1.119 2.881 23 H -0.274 1.274 24 H -0.267 1.267 25 H -0.279 1.279 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.155 0.845 35 H 0.116 0.884 36 H 0.334 0.666 37 H 0.013 0.987 38 H 0.060 0.940 39 H -0.007 1.007 40 H -0.018 1.018 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.884 -13.100 18.026 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.073 0.927 4 C -0.145 4.145 5 C -0.115 4.115 6 C -0.085 4.085 7 C -0.107 4.107 8 C -0.174 4.174 9 C 0.048 3.952 10 F -0.133 7.133 11 C -0.189 4.189 12 C -0.087 4.087 13 C 0.021 3.979 14 H 0.121 0.879 15 N -0.307 5.307 16 C -0.031 4.031 17 C -0.021 4.021 18 C -0.656 4.656 19 H 0.066 0.934 20 C -0.235 4.235 21 N -0.573 5.573 22 Si 0.939 3.061 23 H -0.199 1.199 24 H -0.192 1.192 25 H -0.204 1.204 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.011 0.989 40 H 0.000 1.000 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.572 -11.505 17.359 21.130 hybrid contribution 0.708 -1.753 -0.635 1.994 sum 4.280 -13.259 16.725 21.767 Atomic orbital electron populations 1.21650 0.93753 1.02146 1.01452 1.21180 0.96861 0.98865 0.93403 0.92676 1.21621 0.94557 1.01101 0.97223 1.20579 0.95370 1.02745 0.92823 1.20109 0.94114 0.98784 0.95517 1.21436 0.93497 0.97098 0.98660 1.21360 1.01800 1.03225 0.90996 1.17905 0.90829 1.03724 0.82696 1.91453 1.81344 1.91311 1.49205 1.21159 0.93436 1.04423 0.99847 1.20481 0.98078 0.97997 0.92159 1.20718 0.88273 0.97410 0.91518 0.87933 1.60835 1.60921 1.04421 1.04488 1.21572 0.94436 0.89397 0.97731 1.19101 0.94948 0.94750 0.93306 1.22404 1.35494 1.03896 1.03834 0.93392 1.27456 0.96544 1.07582 0.91933 1.70882 1.32642 1.23553 1.30234 0.82932 0.75477 0.70887 0.76766 1.19934 1.19158 1.20442 0.91678 0.91788 0.94053 0.90572 0.89079 0.87645 0.90261 0.81529 0.82721 0.86580 0.84719 0.96859 0.92210 0.98880 1.00022 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.11 71.98 0.66 -2.38 16 2 C -0.08 -2.04 2.09 -10.77 -0.02 -2.06 16 3 H 0.05 1.62 6.12 -2.39 -0.01 1.61 16 4 C -0.11 -1.78 5.28 30.62 0.16 -1.62 16 5 C -0.08 -1.30 5.67 29.74 0.17 -1.13 16 6 C -0.08 -1.94 5.74 -19.85 -0.11 -2.05 16 7 C -0.09 -1.82 9.60 22.35 0.21 -1.61 16 8 C -0.16 -3.74 10.03 22.25 0.22 -3.52 16 9 C 0.07 2.08 7.30 22.31 0.16 2.25 16 10 F -0.15 -5.17 17.27 44.97 0.78 -4.39 16 11 C -0.17 -5.39 8.30 22.40 0.19 -5.20 16 12 C -0.09 -2.39 4.25 -19.86 -0.08 -2.47 16 13 C 0.13 3.60 2.38 44.06 0.10 3.70 16 14 H 0.10 2.53 8.12 -2.39 -0.02 2.51 16 15 N -0.68 -23.95 5.91 -496.02 -2.93 -26.88 16 16 C 0.10 4.24 4.81 86.31 0.42 4.66 16 17 C 0.02 0.89 4.49 29.85 0.13 1.03 16 18 C -0.62 -36.84 9.11 25.60 0.23 -36.60 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 20 C -0.04 -2.27 5.46 84.65 0.46 -1.80 16 21 N -0.94 -60.04 13.65 21.45 0.29 -59.74 16 22 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.04 1.19 7.88 -2.39 -0.02 1.17 16 29 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 30 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 31 H 0.11 1.14 8.12 -2.39 -0.02 1.12 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.17 2.12 8.05 -2.91 -0.02 2.09 16 34 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 35 H 0.12 3.87 6.58 -2.91 -0.02 3.85 16 36 H 0.33 11.92 7.09 -89.69 -0.64 11.28 16 37 H 0.01 0.60 6.29 -2.39 -0.02 0.59 16 38 H 0.06 2.63 6.46 -2.39 -0.02 2.62 16 39 H -0.01 -0.42 8.01 -2.38 -0.02 -0.44 16 40 H -0.02 -1.08 8.01 -2.39 -0.02 -1.10 16 41 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 Total: -1.00 -70.36 326.07 3.58 -66.78 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.49 Total: 19.11 kcal Atomic # 6 Polarization: -51.72 SS G_CDS: 2.90 Total: -48.82 kcal Atomic # 7 Polarization: -83.98 SS G_CDS: -2.64 Total: -86.62 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -70.36 3.58 -66.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866334806.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.260 kcal (2) G-P(sol) polarization free energy of solvation -70.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds