Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47322 * 120.00206 * 2 1 3 5 5 C 1.50697 * 109.47185 * 294.99932 * 4 2 1 6 6 H 1.08001 * 120.00308 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00422 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99400 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00339 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47179 * 89.99732 * 9 7 5 11 11 H 1.48504 * 109.47094 * 209.99457 * 9 7 5 12 12 H 1.48497 * 109.47078 * 329.99616 * 9 7 5 13 13 C 1.52999 * 109.46842 * 240.00186 * 2 1 3 14 14 N 1.46506 * 109.46998 * 65.00092 * 13 2 1 15 15 C 1.39846 * 119.99512 * 180.02562 * 14 13 2 16 16 C 1.38821 * 120.08458 * 0.02562 * 15 14 13 17 17 C 1.38156 * 119.95044 * 179.72698 * 16 15 14 18 18 C 1.38270 * 120.11148 * 0.53066 * 17 16 15 19 19 C 1.50702 * 119.91998 * 179.72459 * 18 17 16 20 20 C 1.53000 * 117.49604 * 299.72438 * 19 18 17 21 21 C 1.52997 * 117.49669 * 8.34878 * 19 18 17 22 22 C 1.38293 * 120.15775 * 359.44793 * 18 17 16 23 23 C 1.38273 * 120.05320 * 0.29629 * 22 18 17 24 24 F 1.35093 * 120.06092 * 179.97438 * 23 22 18 25 25 H 1.08994 * 109.47343 * 59.99574 * 1 2 3 26 26 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46534 * 300.00101 * 1 2 3 28 28 H 1.08994 * 109.47270 * 54.99752 * 4 2 1 29 29 H 1.09000 * 109.47008 * 174.99729 * 4 2 1 30 30 H 0.96999 * 119.99363 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47142 * 305.00048 * 13 2 1 32 32 H 1.08998 * 109.47329 * 184.99800 * 13 2 1 33 33 H 0.96990 * 120.00379 * 359.97438 * 14 13 2 34 34 H 1.08001 * 120.02666 * 0.02562 * 16 15 14 35 35 H 1.08004 * 119.94365 * 180.25068 * 17 16 15 36 36 H 1.09002 * 115.56044 * 154.03259 * 19 18 17 37 37 H 1.08990 * 117.49990 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49237 * 214.97804 * 20 19 18 39 39 H 1.08999 * 117.49685 * 145.02383 * 21 19 18 40 40 H 1.08999 * 117.52022 * 359.97438 * 21 19 18 41 41 H 1.08001 * 119.97135 * 180.27936 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9934 -0.4018 3.7282 8 7 2.6766 -1.5189 3.8510 9 14 1.4999 0.5633 5.2495 10 1 0.1728 0.0952 5.7237 11 1 2.5096 0.3533 6.3181 12 1 1.4250 2.0084 4.9163 13 6 2.0399 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0083 -0.4304 -3.7120 16 6 2.7285 -1.6099 -3.8438 17 6 3.0738 -2.0705 -5.0997 18 6 2.7129 -1.3530 -6.2252 19 6 3.0972 -1.8563 -7.5927 20 6 4.5888 -2.0200 -7.8917 21 6 3.7100 -3.2552 -7.6841 22 6 1.9951 -0.1777 -6.0993 23 6 1.6414 0.2868 -4.8458 24 9 0.9406 1.4352 -4.7226 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2054 30 1 2.9238 -1.8418 4.7316 31 1 1.6053 -1.7197 -1.2952 32 1 3.1262 -0.7995 -1.2057 33 1 1.1482 0.8591 -2.3518 34 1 3.0144 -2.1695 -2.9654 35 1 3.6306 -2.9903 -5.2022 36 1 2.4522 -1.5350 -8.4105 37 1 5.2920 -1.7633 -7.0995 38 1 4.9250 -1.8063 -8.9063 39 1 3.4683 -3.8541 -8.5621 40 1 3.8357 -3.8116 -6.7553 41 1 1.7108 0.3780 -6.9807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877760834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -17.199492 kcal Electronic energy + Delta-G solvation = -20553.643636 eV Core-core repulsion = 17347.652258 eV Total energy + Delta-G solvation = -3205.991378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.68184 -39.67902 -37.64822 -36.11964 -33.84171 -32.07219 -30.56365 -28.98897 -26.91350 -25.93084 -23.52269 -23.36898 -22.50949 -21.85876 -20.34918 -19.41132 -17.62144 -16.76785 -16.43157 -16.17497 -15.83576 -15.54305 -14.70398 -14.54090 -14.45789 -14.19823 -13.86504 -13.32092 -12.98763 -12.76305 -12.48273 -12.30648 -12.10268 -11.99574 -11.61605 -11.53711 -11.14260 -10.92906 -10.91648 -10.78840 -10.57989 -10.42810 -10.40037 -9.95590 -9.57753 -9.34388 -9.08915 -8.80155 -8.40087 -7.19083 -6.04792 -4.06635 1.25986 1.42194 3.28947 3.35661 3.38398 3.46441 3.57533 3.93182 4.24932 4.42461 4.53029 4.69894 4.79343 4.86565 4.98419 5.15312 5.31235 5.37885 5.42920 5.49210 5.61192 5.62092 5.69814 5.84707 5.87129 5.89592 6.05136 6.10153 6.16229 6.29811 6.33246 6.37978 6.58275 6.74140 6.86844 6.96309 7.00546 7.40785 7.58045 7.71314 7.84312 7.93696 8.36061 8.98904 9.57326 11.06642 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.003032 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.533250 B = 9233.999768 C = 9902.094929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.063 0.937 4 C 0.031 3.969 5 C -0.517 4.517 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.125 3.875 14 N -0.735 5.735 15 C 0.198 3.802 16 C -0.174 4.174 17 C -0.077 4.077 18 C -0.100 4.100 19 C -0.104 4.104 20 C -0.174 4.174 21 C -0.180 4.180 22 C -0.097 4.097 23 C 0.011 3.989 24 F -0.146 7.146 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.402 0.598 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.831 -1.249 -21.995 22.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.007 4.007 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.002 3.998 14 N -0.363 5.363 15 C 0.091 3.909 16 C -0.197 4.197 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.122 4.122 20 C -0.211 4.211 21 C -0.216 4.216 22 C -0.117 4.117 23 C -0.013 4.013 24 F -0.125 7.125 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.943 -1.436 -21.645 21.713 hybrid contribution -0.565 0.989 1.013 1.524 sum 0.378 -0.446 -20.633 20.641 Atomic orbital electron populations 1.21727 0.95848 1.01145 1.00286 1.21451 0.95732 0.99872 0.94469 0.91902 1.19075 0.96265 0.95545 0.89788 1.21186 1.35015 1.08393 0.90899 0.92545 1.25013 0.95191 0.95100 0.99144 1.69961 1.38771 1.21167 1.23539 0.86606 0.78259 0.80392 0.82835 1.20675 1.21227 1.19909 1.21697 0.99217 0.95195 0.83672 1.45009 1.60753 1.28195 1.02293 1.17957 0.94510 0.93410 0.85051 1.20591 1.04085 0.96597 0.98410 1.20815 0.98465 0.99050 0.91206 1.18574 1.02621 0.95780 0.93267 1.20850 0.96162 0.99798 0.95422 1.23042 0.93080 1.02262 1.02731 1.23065 1.04394 0.90707 1.03481 1.20582 0.99168 0.96645 0.95291 1.17081 1.04262 0.86757 0.93242 1.91425 1.77185 1.47189 1.96711 0.95085 0.93413 0.91671 0.96267 0.96412 0.92974 0.92334 0.92274 0.76288 0.84868 0.85684 0.87311 0.88538 0.88747 0.88660 0.88293 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.88 37.16 0.33 -2.08 16 2 C -0.10 -1.86 2.37 -90.62 -0.22 -2.08 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.03 0.75 4.45 -27.89 -0.12 0.63 16 5 C -0.52 -14.05 8.41 -34.44 -0.29 -14.34 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.13 2.07 4.31 -4.04 -0.02 2.05 16 14 N -0.74 -11.13 5.47 -58.56 -0.32 -11.45 16 15 C 0.20 2.86 6.66 -83.67 -0.56 2.30 16 16 C -0.17 -2.28 9.31 -39.40 -0.37 -2.65 16 17 C -0.08 -0.87 9.29 -39.60 -0.37 -1.24 16 18 C -0.10 -1.10 5.61 -104.59 -0.59 -1.69 16 19 C -0.10 -0.91 6.04 -91.77 -0.55 -1.47 16 20 C -0.17 -1.34 10.17 -26.73 -0.27 -1.62 16 21 C -0.18 -1.35 9.86 -26.73 -0.26 -1.61 16 22 C -0.10 -1.16 9.71 -39.55 -0.38 -1.55 16 23 C 0.01 0.15 7.31 -39.25 -0.29 -0.14 16 24 F -0.15 -2.14 16.64 2.25 0.04 -2.10 16 25 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 32 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 33 H 0.40 5.99 7.14 -40.82 -0.29 5.70 16 34 H 0.13 1.69 6.74 -52.49 -0.35 1.34 16 35 H 0.13 1.17 6.00 -52.48 -0.32 0.85 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.73 6.16 -51.93 -0.32 0.41 16 41 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -28.89 338.72 -9.67 -38.56 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.15 Total: 3.15 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -4.05 Total: -23.99 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.42 Total: -37.05 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.89 -9.67 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877760834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.358 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds