Wall clock time and date at job start Mon Mar 30 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46995 * 2 1 4 4 C 1.52994 * 109.47322 * 120.00206 * 2 1 3 5 5 C 1.50697 * 109.47185 * 294.99932 * 4 2 1 6 6 H 1.08001 * 120.00308 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00422 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99400 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00339 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47179 * 89.99732 * 9 7 5 11 11 H 1.48504 * 109.47094 * 209.99457 * 9 7 5 12 12 H 1.48497 * 109.47078 * 329.99616 * 9 7 5 13 13 C 1.52999 * 109.46842 * 240.00186 * 2 1 3 14 14 N 1.46506 * 109.46998 * 65.00092 * 13 2 1 15 15 C 1.39846 * 119.99512 * 180.02562 * 14 13 2 16 16 C 1.38821 * 120.08458 * 0.02562 * 15 14 13 17 17 C 1.38156 * 119.95044 * 179.72698 * 16 15 14 18 18 C 1.38270 * 120.11148 * 0.53066 * 17 16 15 19 19 C 1.50702 * 119.91998 * 179.72459 * 18 17 16 20 20 C 1.53000 * 117.49604 * 299.72438 * 19 18 17 21 21 C 1.52997 * 117.49669 * 8.34878 * 19 18 17 22 22 C 1.38293 * 120.15775 * 359.44793 * 18 17 16 23 23 C 1.38273 * 120.05320 * 0.29629 * 22 18 17 24 24 F 1.35093 * 120.06092 * 179.97438 * 23 22 18 25 25 H 1.08994 * 109.47343 * 59.99574 * 1 2 3 26 26 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46534 * 300.00101 * 1 2 3 28 28 H 1.08994 * 109.47270 * 54.99752 * 4 2 1 29 29 H 1.09000 * 109.47008 * 174.99729 * 4 2 1 30 30 H 0.96999 * 119.99363 * 180.02562 * 8 7 5 31 31 H 1.08992 * 109.47142 * 305.00048 * 13 2 1 32 32 H 1.08998 * 109.47329 * 184.99800 * 13 2 1 33 33 H 0.96990 * 120.00379 * 359.97438 * 14 13 2 34 34 H 1.08001 * 120.02666 * 0.02562 * 16 15 14 35 35 H 1.08004 * 119.94365 * 180.25068 * 17 16 15 36 36 H 1.09002 * 115.56044 * 154.03259 * 19 18 17 37 37 H 1.08990 * 117.49990 * 359.97438 * 20 19 18 38 38 H 1.09004 * 117.49237 * 214.97804 * 20 19 18 39 39 H 1.08999 * 117.49685 * 145.02383 * 21 19 18 40 40 H 1.08999 * 117.52022 * 359.97438 * 21 19 18 41 41 H 1.08001 * 119.97135 * 180.27936 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0807 0.9745 2.3757 7 6 1.9934 -0.4018 3.7282 8 7 2.6766 -1.5189 3.8510 9 14 1.4999 0.5633 5.2495 10 1 0.1728 0.0952 5.7237 11 1 2.5096 0.3533 6.3181 12 1 1.4250 2.0084 4.9163 13 6 2.0399 -0.7212 -1.2493 14 7 1.6523 0.0355 -2.4424 15 6 2.0083 -0.4304 -3.7120 16 6 2.7285 -1.6099 -3.8438 17 6 3.0738 -2.0705 -5.0997 18 6 2.7129 -1.3530 -6.2252 19 6 3.0972 -1.8563 -7.5927 20 6 4.5888 -2.0200 -7.8917 21 6 3.7100 -3.2552 -7.6841 22 6 1.9951 -0.1777 -6.0993 23 6 1.6414 0.2868 -4.8458 24 9 0.9406 1.4352 -4.7226 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7995 1.2054 30 1 2.9238 -1.8418 4.7316 31 1 1.6053 -1.7197 -1.2952 32 1 3.1262 -0.7995 -1.2057 33 1 1.1482 0.8591 -2.3518 34 1 3.0144 -2.1695 -2.9654 35 1 3.6306 -2.9903 -5.2022 36 1 2.4522 -1.5350 -8.4105 37 1 5.2920 -1.7633 -7.0995 38 1 4.9250 -1.8063 -8.9063 39 1 3.4683 -3.8541 -8.5621 40 1 3.8357 -3.8116 -6.7553 41 1 1.7108 0.3780 -6.9807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877760834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:55 Heat of formation + Delta-G solvation = -30.649402 kcal Electronic energy + Delta-G solvation = -20554.226868 eV Core-core repulsion = 17347.652258 eV Total energy + Delta-G solvation = -3206.574610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.154 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.76272 -40.61558 -38.73176 -37.28237 -35.35810 -33.87287 -31.53350 -30.20991 -28.71038 -27.28050 -25.07663 -24.35750 -23.27006 -22.96019 -21.22055 -20.95640 -18.74673 -18.53544 -17.61605 -17.27167 -16.69167 -16.62607 -16.51778 -16.01023 -15.50432 -15.26213 -14.96976 -14.53038 -14.27083 -14.18715 -14.08233 -13.42298 -13.35301 -13.25430 -12.83039 -12.77423 -12.75268 -12.28564 -12.20125 -12.11720 -11.93312 -11.81404 -11.52274 -11.21273 -11.17966 -11.05722 -10.56223 -10.54611 -9.78096 -8.26986 -8.19312 -6.28082 0.27704 0.45409 1.40151 1.40416 1.51213 2.35390 2.44957 2.60023 3.14828 3.19168 3.32740 3.68842 3.91418 3.99699 4.07692 4.13379 4.17621 4.23514 4.33248 4.37891 4.48470 4.64807 4.72049 4.81278 4.86475 4.88733 4.99944 5.08222 5.16923 5.19505 5.23223 5.27125 5.34516 5.38245 5.41338 5.49937 5.68225 5.73530 5.84007 5.84755 6.21441 6.30561 6.68947 6.87249 7.40205 8.92662 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032009 B = 0.003032 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.533250 B = 9233.999768 C = 9902.094929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.086 4.086 3 H 0.060 0.940 4 C 0.036 3.964 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.265 1.265 13 C 0.142 3.858 14 N -0.739 5.739 15 C 0.176 3.824 16 C -0.182 4.182 17 C -0.077 4.077 18 C -0.092 4.092 19 C -0.118 4.118 20 C -0.171 4.171 21 C -0.174 4.174 22 C -0.099 4.099 23 C -0.004 4.004 24 F -0.154 7.154 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.049 0.951 28 H -0.003 1.003 29 H -0.007 1.007 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.402 0.598 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 -1.057 -23.731 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 H 0.078 0.922 4 C -0.002 4.002 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.189 1.189 13 C 0.018 3.982 14 N -0.368 5.368 15 C 0.071 3.929 16 C -0.205 4.205 17 C -0.095 4.095 18 C -0.095 4.095 19 C -0.136 4.136 20 C -0.208 4.208 21 C -0.211 4.211 22 C -0.118 4.118 23 C -0.028 4.028 24 F -0.133 7.133 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.237 0.763 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.733 -1.239 -23.416 23.460 hybrid contribution -0.449 0.876 1.427 1.733 sum 0.284 -0.363 -21.990 21.994 Atomic orbital electron populations 1.21634 0.94659 1.01144 1.00824 1.21214 0.96609 0.99160 0.93507 0.92192 1.18940 0.94612 0.94796 0.91822 1.21607 1.34624 1.08638 0.92025 0.92122 1.25904 0.95225 0.96085 1.02531 1.70088 1.40074 1.22826 1.24341 0.85535 0.78013 0.79245 0.78803 1.19916 1.20947 1.18943 1.21325 0.98736 0.94885 0.83215 1.44763 1.61641 1.28267 1.02128 1.18122 0.95748 0.94288 0.84741 1.20736 1.04141 0.96371 0.99288 1.21086 0.98074 0.99720 0.90615 1.18902 1.01069 0.95015 0.94477 1.20930 0.97250 1.01112 0.94329 1.23100 0.92099 1.02154 1.03402 1.23170 1.03399 0.90330 1.04186 1.20857 0.98815 0.97007 0.95171 1.17318 1.04840 0.86767 0.93880 1.91399 1.77451 1.47623 1.96803 0.92382 0.93669 0.93191 0.98472 0.98844 0.92876 0.92303 0.92777 0.76274 0.85013 0.83616 0.86020 0.89228 0.87214 0.87125 0.88291 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.88 71.98 0.64 -3.87 16 2 C -0.09 -3.37 2.37 -10.80 -0.03 -3.39 16 3 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.04 1.82 4.45 29.85 0.13 1.95 16 5 C -0.53 -29.30 8.41 25.60 0.22 -29.09 16 6 H 0.06 3.23 7.06 -2.91 -0.02 3.20 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 C 0.14 4.75 4.31 86.38 0.37 5.12 16 14 N -0.74 -22.28 5.47 -339.19 -1.85 -24.13 16 15 C 0.18 5.02 6.66 38.21 0.25 5.28 16 16 C -0.18 -4.68 9.31 22.39 0.21 -4.47 16 17 C -0.08 -1.61 9.29 22.26 0.21 -1.41 16 18 C -0.09 -1.85 5.61 -19.84 -0.11 -1.96 16 19 C -0.12 -1.74 6.04 -11.54 -0.07 -1.81 16 20 C -0.17 -2.16 10.17 30.60 0.31 -1.84 16 21 C -0.17 -2.09 9.86 30.60 0.30 -1.79 16 22 C -0.10 -2.20 9.71 22.29 0.22 -1.99 16 23 C 0.00 -0.12 7.31 22.48 0.16 0.05 16 24 F -0.15 -4.41 16.64 44.97 0.75 -3.66 16 25 H 0.06 1.77 7.18 -2.39 -0.02 1.75 16 26 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.93 6.95 -2.39 -0.02 1.91 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.06 1.95 7.95 -2.39 -0.02 1.93 16 32 H 0.05 1.84 7.95 -2.39 -0.02 1.82 16 33 H 0.40 11.84 7.14 -92.72 -0.66 11.18 16 34 H 0.13 3.35 6.74 -2.91 -0.02 3.33 16 35 H 0.15 2.40 6.00 -2.91 -0.02 2.39 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.10 1.19 6.16 -2.39 -0.01 1.17 16 41 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -62.10 338.72 4.85 -57.25 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.36 Total: 19.04 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.28 Total: -38.76 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.57 Total: -79.83 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.75 Total: -3.66 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -62.10 4.85 -57.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877760834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.598 kcal (2) G-P(sol) polarization free energy of solvation -62.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds