Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46946 * 2 1 4 4 C 1.50697 * 109.47508 * 239.99116 * 2 1 3 5 5 H 1.07998 * 120.00396 * 244.96158 * 4 2 1 6 6 C 1.37886 * 119.99564 * 64.96388 * 4 2 1 7 7 N 1.31509 * 119.99966 * 6.61716 * 6 4 2 8 8 Si 1.86797 * 119.99832 * 186.61102 * 6 4 2 9 9 H 1.48502 * 109.46785 * 94.91822 * 8 6 4 10 10 H 1.48496 * 109.47362 * 214.91437 * 8 6 4 11 11 H 1.48496 * 109.47180 * 334.91892 * 8 6 4 12 12 N 1.46504 * 109.46749 * 119.99381 * 2 1 3 13 13 C 1.34780 * 119.99923 * 274.99993 * 12 2 1 14 14 O 1.21275 * 119.99920 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99631 * 180.02562 * 13 12 2 16 16 H 1.09001 * 109.71915 * 26.02845 * 15 13 12 17 17 C 1.50883 * 109.75271 * 146.65908 * 15 13 12 18 18 C 1.34567 * 128.33104 * 283.01412 * 17 15 13 19 19 N 1.35203 * 107.62233 * 180.19265 * 18 17 15 20 20 H 0.97000 * 126.00233 * 179.97438 * 19 18 17 21 21 N 1.40314 * 107.98777 * 359.93800 * 19 18 17 22 22 C 1.30121 * 108.12633 * 0.02562 * 21 19 18 23 23 C 1.50955 * 128.28551 * 180.15971 * 22 21 19 24 24 C 1.53365 * 108.20242 * 163.22603 * 23 22 21 25 25 C 1.53027 * 109.75640 * 50.65185 * 24 23 22 26 26 H 1.09007 * 109.42568 * 48.30505 * 25 24 23 27 27 C 1.52996 * 109.43369 * 168.20112 * 25 24 23 28 28 H 1.09007 * 109.46967 * 173.83598 * 1 2 3 29 29 H 1.08995 * 109.47387 * 293.83727 * 1 2 3 30 30 H 1.08997 * 109.47169 * 53.84235 * 1 2 3 31 31 H 0.96999 * 120.00289 * 180.02562 * 7 6 4 32 32 H 0.97003 * 119.99935 * 95.00657 * 12 2 1 33 33 H 1.08007 * 126.19105 * 0.24336 * 18 17 15 34 34 H 1.09004 * 109.71202 * 282.89966 * 23 22 21 35 35 H 1.08992 * 109.71376 * 43.50472 * 23 22 21 36 36 H 1.09000 * 109.42549 * 170.74095 * 24 23 22 37 37 H 1.08999 * 109.42728 * 290.62052 * 24 23 22 38 38 H 1.08994 * 109.47190 * 66.36933 * 27 25 24 39 39 H 1.09000 * 109.47150 * 186.37434 * 27 25 24 40 40 H 1.09007 * 109.47004 * 306.37285 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.5856 -1.6330 -1.1331 6 6 1.7858 -0.1829 -2.4801 7 7 1.2280 1.0024 -2.5950 8 14 2.2442 -1.1518 -4.0100 9 1 1.0618 -1.9138 -4.4860 10 1 2.6909 -0.2162 -5.0731 11 1 3.3441 -2.0957 -3.6870 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0180 2.3572 14 8 1.8581 1.1586 2.4116 15 6 2.6497 -0.7282 3.5876 16 1 3.2712 -1.5747 3.2955 17 6 3.4551 0.2264 4.4341 18 6 4.7153 0.6559 4.2384 19 7 5.0228 1.4974 5.2510 20 1 5.8670 1.9596 5.3718 21 7 3.9060 1.5852 6.0958 22 6 2.9686 0.8260 5.6079 23 6 1.5807 0.5872 6.1515 24 6 0.7280 -0.0277 5.0348 25 6 1.4616 -1.2229 4.4224 26 1 1.8240 -1.8728 5.2190 27 6 0.5001 -2.0051 3.5254 28 1 -0.3633 -1.0218 -0.1104 29 1 -0.3634 0.4153 0.9399 30 1 -0.3633 0.6063 -0.8297 31 1 1.0541 1.3735 -3.4742 32 1 2.2490 -1.6317 1.1528 33 1 5.3635 0.3791 3.4201 34 1 1.6300 -0.0992 6.9968 35 1 1.1432 1.5330 6.4708 36 1 -0.2248 -0.3596 5.4472 37 1 0.5478 0.7203 4.2627 38 1 0.2240 -1.3923 2.6673 39 1 0.9867 -2.9169 3.1792 40 1 -0.3955 -2.2632 4.0907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878535427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = 17.021029 kcal Electronic energy + Delta-G solvation = -22298.788661 eV Core-core repulsion = 19114.201158 eV Total energy + Delta-G solvation = -3184.587503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44808 -39.09595 -36.44017 -34.63840 -32.70191 -32.07747 -30.90736 -29.59570 -28.80100 -26.28987 -25.21018 -23.83486 -22.11993 -20.63504 -20.53566 -19.47963 -18.62615 -17.68120 -16.53177 -15.83679 -15.20194 -15.09578 -14.69734 -14.42170 -14.13087 -13.68069 -13.42764 -12.99899 -12.71705 -12.58619 -12.47702 -12.27865 -11.87678 -11.73094 -11.40009 -11.04841 -11.02749 -10.91525 -10.73428 -10.67279 -10.53052 -10.29735 -10.25976 -10.04911 -9.22619 -9.05699 -8.93087 -8.51168 -8.18480 -7.81392 -6.12377 -4.18449 2.04991 2.86836 2.97684 3.24664 3.32059 3.33687 3.52834 4.23593 4.45515 4.53044 4.85926 4.98100 5.02750 5.21749 5.26605 5.36819 5.57515 5.60686 5.62565 5.71752 5.84950 5.92101 5.95575 6.05622 6.09140 6.24282 6.32889 6.47222 6.63019 6.78405 6.83342 6.92994 7.13505 7.40909 7.50856 7.61596 7.72221 7.81855 7.90631 8.10738 8.75899 8.84350 9.24707 9.49014 10.96050 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.004866 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.017188 B = 5752.993008 C = 6242.260765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.512 3.488 14 O -0.546 6.546 15 C -0.028 4.028 16 H 0.088 0.912 17 C -0.207 4.207 18 C 0.068 3.932 19 N -0.487 5.487 20 H 0.437 0.563 21 N -0.297 5.297 22 C 0.096 3.904 23 C -0.035 4.035 24 C -0.121 4.121 25 C -0.072 4.072 26 H 0.076 0.924 27 C -0.160 4.160 28 H 0.030 0.970 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.174 0.826 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.289 -5.610 14.585 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.359 5.359 13 C 0.296 3.704 14 O -0.424 6.424 15 C -0.051 4.051 16 H 0.106 0.894 17 C -0.218 4.218 18 C -0.077 4.077 19 N -0.195 5.195 20 H 0.280 0.720 21 N -0.120 5.120 22 C -0.073 4.073 23 C -0.074 4.074 24 C -0.159 4.159 25 C -0.091 4.091 26 H 0.095 0.905 27 C -0.217 4.217 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.191 0.809 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.341 -3.816 15.363 16.178 hybrid contribution 0.758 -1.190 -1.743 2.242 sum 4.099 -5.006 13.620 15.079 Atomic orbital electron populations 1.22004 0.98895 0.99527 0.99388 1.18693 0.90546 0.94343 0.80231 0.93043 1.21207 1.36523 1.08980 0.90491 0.92127 1.24891 0.95018 0.94667 0.99020 1.69969 1.42599 1.15394 1.24015 0.86501 0.78649 0.79773 0.82569 1.20583 1.21192 1.19855 1.46600 1.65435 1.13369 1.10483 1.20240 0.78523 0.87391 0.84230 1.90637 1.50799 1.16043 1.84890 1.19804 0.96093 0.96206 0.93029 0.89356 1.19479 0.94634 1.07888 0.99846 1.22031 0.97623 0.94392 0.93696 1.46196 1.14407 1.38788 1.20111 0.71993 1.76920 0.94508 1.23507 1.17027 1.22262 0.95922 0.94605 0.94490 1.20089 0.87951 1.01539 0.97800 1.21752 0.97536 0.98251 0.98360 1.21012 0.94240 0.96627 0.97203 0.90521 1.22032 0.98883 1.00298 1.00470 0.95114 0.96362 0.91030 0.92654 0.78122 0.80863 0.90222 0.90137 0.91152 0.89655 0.91098 0.92401 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.24 37.16 0.34 -3.02 16 2 C 0.26 6.57 2.43 -69.08 -0.17 6.41 16 3 H 0.05 1.52 7.55 -51.93 -0.39 1.12 16 4 C -0.53 -13.92 8.67 -34.44 -0.30 -14.22 16 5 H 0.06 1.51 7.73 -52.49 -0.41 1.10 16 6 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 7 N -0.88 -25.02 12.04 55.43 0.67 -24.36 16 8 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 12 N -0.71 -14.23 4.24 -54.93 -0.23 -14.46 16 13 C 0.51 9.89 5.05 -10.99 -0.06 9.83 16 14 O -0.55 -12.95 14.75 5.56 0.08 -12.87 16 15 C -0.03 -0.42 2.66 -92.63 -0.25 -0.67 16 16 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 17 C -0.21 -3.17 4.66 -104.98 -0.49 -3.66 16 18 C 0.07 0.93 11.95 -17.37 -0.21 0.73 16 19 N -0.49 -6.32 7.37 30.35 0.22 -6.10 16 20 H 0.44 4.04 8.96 -182.43 -1.64 2.40 16 21 N -0.30 -4.63 12.68 33.75 0.43 -4.20 16 22 C 0.10 1.47 7.10 -82.34 -0.58 0.89 16 23 C -0.03 -0.44 6.31 -27.57 -0.17 -0.61 16 24 C -0.12 -1.59 5.14 -26.53 -0.14 -1.73 16 25 C -0.07 -0.91 2.44 -90.40 -0.22 -1.13 16 26 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 27 C -0.16 -1.98 8.83 37.16 0.33 -1.65 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.89 6.90 -51.93 -0.36 1.53 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.39 6.70 8.52 -40.82 -0.35 6.36 16 33 H 0.17 1.90 8.06 -52.48 -0.42 1.47 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.76 8.04 -51.93 -0.42 0.35 16 37 H 0.08 1.44 6.30 -51.93 -0.33 1.11 16 38 H 0.07 1.09 6.24 -51.93 -0.32 0.77 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.61 8.07 -51.92 -0.42 0.20 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -32.73 323.31 -8.13 -40.86 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.14 Total: 7.90 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.00 Total: -7.11 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: 1.09 Total: -49.12 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.73 -8.13 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.879 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds