Wall clock time and date at job start Mon Mar 30 2020 02:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 109.72037 * 59.99481 * 15 13 12 17 17 C 1.50880 * 109.71856 * 299.38387 * 15 13 12 18 18 C 1.34576 * 128.32703 * 43.70080 * 17 15 13 19 19 N 1.35194 * 107.61886 * 180.11244 * 18 17 15 20 20 H 0.97006 * 126.00347 * 179.97438 * 19 18 17 21 21 N 1.40315 * 107.99698 * 359.96841 * 19 18 17 22 22 C 1.30132 * 108.11729 * 359.96426 * 21 19 18 23 23 C 1.50948 * 128.28240 * 180.19044 * 22 21 19 24 24 C 1.53370 * 108.20080 * 163.18792 * 23 22 21 25 25 C 1.53076 * 109.78106 * 50.66796 * 24 23 22 26 26 H 1.09005 * 109.41014 * 48.39011 * 25 24 23 27 27 C 1.52999 * 109.46568 * 168.24442 * 25 24 23 28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 33 33 H 1.08007 * 126.18940 * 0.08284 * 18 17 15 34 34 H 1.09006 * 109.71511 * 282.85990 * 23 22 21 35 35 H 1.08994 * 109.71705 * 43.50529 * 23 22 21 36 36 H 1.09000 * 109.42376 * 170.76062 * 24 23 22 37 37 H 1.08999 * 109.42181 * 290.64119 * 24 23 22 38 38 H 1.08999 * 109.47122 * 180.26097 * 27 25 24 39 39 H 1.09005 * 109.47169 * 300.26090 * 27 25 24 40 40 H 1.09003 * 109.46956 * 60.26028 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6383 -1.1257 3.4095 17 6 1.7009 -1.8620 3.9375 18 6 1.1357 -2.7612 3.1111 19 7 0.3694 -3.5829 3.8630 20 1 -0.1587 -4.3280 3.5358 21 7 0.4721 -3.1689 5.1997 22 6 1.2688 -2.1410 5.2449 23 6 1.6984 -1.3430 6.4521 24 6 2.9386 -0.5258 6.0696 25 6 2.6724 0.2439 4.7735 26 1 1.7138 0.7576 4.8476 27 6 3.7839 1.2719 4.5535 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7086 1.1614 -3.4843 32 1 2.2489 -1.6319 1.1525 33 1 1.2696 -2.8162 2.0408 34 1 0.8945 -0.6717 6.7542 35 1 1.9416 -2.0187 7.2720 36 1 3.1689 0.1789 6.8687 37 1 3.7845 -1.1976 5.9238 38 1 3.5920 1.8232 3.6330 39 1 3.8088 1.9656 5.3940 40 1 4.7429 0.7594 4.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878535428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:34 Heat of formation + Delta-G solvation = 17.534969 kcal Electronic energy + Delta-G solvation = -22232.338529 eV Core-core repulsion = 19047.773312 eV Total energy + Delta-G solvation = -3184.565217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.54342 -39.02886 -36.70405 -34.71494 -32.73672 -32.25918 -30.99719 -29.51470 -28.70684 -26.35444 -25.25967 -23.96960 -22.08362 -20.69108 -20.41048 -19.57476 -18.77686 -17.57392 -17.03900 -15.72516 -15.30649 -14.99395 -14.75549 -14.39224 -14.17546 -13.89716 -13.62907 -13.03713 -12.89593 -12.65162 -12.44211 -12.05075 -11.87013 -11.64697 -11.46227 -11.11838 -11.00177 -10.96600 -10.79499 -10.63094 -10.45046 -10.38574 -10.25004 -10.24377 -9.33298 -9.07149 -9.02671 -8.57093 -8.24901 -7.88017 -6.13719 -4.23454 1.95860 2.73417 2.88961 3.23148 3.29204 3.29776 3.51497 4.12626 4.37167 4.48395 4.77824 4.91244 5.04147 5.17466 5.18427 5.36089 5.49101 5.57887 5.61069 5.67576 5.83141 5.88456 5.94609 6.01167 6.09843 6.15375 6.30237 6.61561 6.62619 6.70092 6.81295 6.96924 7.14999 7.32477 7.48486 7.55399 7.67932 7.71718 7.91151 8.14422 8.67393 8.78022 9.16210 9.44804 10.92029 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.005117 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.702330 B = 5470.413819 C = 6159.002450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.712 5.712 13 C 0.512 3.488 14 O -0.548 6.548 15 C -0.026 4.026 16 H 0.096 0.904 17 C -0.227 4.227 18 C 0.072 3.928 19 N -0.483 5.483 20 H 0.439 0.561 21 N -0.294 5.294 22 C 0.088 3.912 23 C -0.039 4.039 24 C -0.111 4.111 25 C -0.068 4.068 26 H 0.081 0.919 27 C -0.149 4.149 28 H 0.014 0.986 29 H 0.089 0.911 30 H 0.023 0.977 31 H 0.265 0.735 32 H 0.383 0.617 33 H 0.179 0.821 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.973 -6.632 14.208 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.361 5.361 13 C 0.297 3.703 14 O -0.426 6.426 15 C -0.049 4.049 16 H 0.114 0.886 17 C -0.239 4.239 18 C -0.074 4.074 19 N -0.191 5.191 20 H 0.283 0.717 21 N -0.117 5.117 22 C -0.080 4.080 23 C -0.078 4.078 24 C -0.149 4.149 25 C -0.087 4.087 26 H 0.099 0.901 27 C -0.206 4.206 28 H 0.033 0.967 29 H 0.108 0.892 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.196 0.804 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.941 -6.438 14.715 16.179 hybrid contribution 0.507 -0.944 -1.833 2.123 sum 2.448 -7.381 12.883 15.048 Atomic orbital electron populations 1.22063 0.98607 0.98848 1.00860 1.18707 0.90864 0.94051 0.80049 0.93361 1.21177 1.32510 1.13253 0.90403 0.92236 1.24881 0.94792 0.94936 0.99017 1.69890 1.35724 1.22392 1.23976 0.86530 0.79204 0.79537 0.81932 1.20241 1.21137 1.20164 1.46638 1.65526 1.13250 1.10645 1.20293 0.78254 0.87369 0.84418 1.90624 1.50800 1.16046 1.85131 1.19849 0.97829 0.92867 0.94338 0.88627 1.19706 1.09005 1.02339 0.92815 1.22297 0.94478 0.92346 0.98307 1.46267 1.39925 1.28045 1.04871 0.71714 1.76945 1.22175 1.16028 0.96536 1.22303 0.95458 0.94375 0.95899 1.20144 0.98310 0.96742 0.92572 1.21676 0.96967 0.98628 0.97589 1.20924 1.00923 0.94845 0.92015 0.90063 1.21887 0.97139 0.98600 1.03003 0.96679 0.89250 0.95783 0.92521 0.78377 0.80417 0.89814 0.90125 0.90786 0.91542 0.90686 0.92967 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.22 16 2 C 0.26 6.59 2.56 -69.09 -0.18 6.41 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 8 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 N -0.71 -14.29 4.47 -54.94 -0.25 -14.54 16 13 C 0.51 9.99 6.79 -10.99 -0.07 9.91 16 14 O -0.55 -12.68 13.94 5.55 0.08 -12.61 16 15 C -0.03 -0.39 2.33 -92.64 -0.22 -0.61 16 16 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 17 C -0.23 -3.31 5.41 -104.98 -0.57 -3.87 16 18 C 0.07 0.98 11.00 -17.37 -0.19 0.79 16 19 N -0.48 -6.08 7.37 30.35 0.22 -5.85 16 20 H 0.44 4.06 8.96 -182.43 -1.64 2.43 16 21 N -0.29 -4.26 12.68 33.75 0.43 -3.83 16 22 C 0.09 1.24 7.10 -82.34 -0.58 0.65 16 23 C -0.04 -0.42 6.31 -27.57 -0.17 -0.59 16 24 C -0.11 -1.14 5.18 -26.50 -0.14 -1.28 16 25 C -0.07 -0.92 1.77 -90.38 -0.16 -1.08 16 26 H 0.08 1.27 7.76 -51.93 -0.40 0.87 16 27 C -0.15 -1.97 8.95 37.16 0.33 -1.63 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 30 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.38 6.60 6.28 -40.82 -0.26 6.35 16 33 H 0.18 2.24 5.97 -52.48 -0.31 1.93 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -31.36 319.55 -8.08 -39.45 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.99 Total: 8.21 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.00 Total: -6.96 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 1.03 Total: -48.16 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.36 -8.08 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.981 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds