Wall clock time and date at job start Mon Mar 30 2020 02:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46965 * 2 1 4 4 C 1.50696 * 109.46890 * 240.00408 * 2 1 3 5 5 H 1.08002 * 120.00157 * 239.99837 * 4 2 1 6 6 C 1.37881 * 120.00447 * 59.99907 * 4 2 1 7 7 N 1.31510 * 119.99635 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47150 * 60.00100 * 8 6 4 10 10 H 1.48498 * 109.47193 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47405 * 300.00440 * 8 6 4 12 12 N 1.46499 * 109.47136 * 120.00350 * 2 1 3 13 13 C 1.34777 * 119.99665 * 275.27771 * 12 2 1 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 2 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 2 16 16 H 1.08998 * 109.72037 * 59.99481 * 15 13 12 17 17 C 1.50880 * 109.71856 * 299.38387 * 15 13 12 18 18 C 1.34576 * 128.32703 * 43.70080 * 17 15 13 19 19 N 1.35194 * 107.61886 * 180.11244 * 18 17 15 20 20 H 0.97006 * 126.00347 * 179.97438 * 19 18 17 21 21 N 1.40315 * 107.99698 * 359.96841 * 19 18 17 22 22 C 1.30132 * 108.11729 * 359.96426 * 21 19 18 23 23 C 1.50948 * 128.28240 * 180.19044 * 22 21 19 24 24 C 1.53370 * 108.20080 * 163.18792 * 23 22 21 25 25 C 1.53076 * 109.78106 * 50.66796 * 24 23 22 26 26 H 1.09005 * 109.41014 * 48.39011 * 25 24 23 27 27 C 1.52999 * 109.46568 * 168.24442 * 25 24 23 28 28 H 1.08999 * 109.47488 * 299.99925 * 1 2 3 29 29 H 1.09005 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09006 * 109.47500 * 179.97438 * 1 2 3 31 31 H 0.97000 * 120.00295 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99790 * 94.99484 * 12 2 1 33 33 H 1.08007 * 126.18940 * 0.08284 * 18 17 15 34 34 H 1.09006 * 109.71511 * 282.85990 * 23 22 21 35 35 H 1.08994 * 109.71705 * 43.50529 * 23 22 21 36 36 H 1.09000 * 109.42376 * 170.76062 * 24 23 22 37 37 H 1.08999 * 109.42181 * 290.64119 * 24 23 22 38 38 H 1.08999 * 109.47122 * 180.26097 * 27 25 24 39 39 H 1.09005 * 109.47169 * 300.26090 * 27 25 24 40 40 H 1.09003 * 109.46956 * 60.26028 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1193 -4.0080 9 1 1.8279 -2.5197 -4.0083 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 7 2.0183 -0.6907 1.1961 13 6 2.1417 -0.0197 2.3585 14 8 1.8533 1.1571 2.4129 15 6 2.6382 -0.7317 3.5903 16 1 3.6383 -1.1257 3.4095 17 6 1.7009 -1.8620 3.9375 18 6 1.1357 -2.7612 3.1111 19 7 0.3694 -3.5829 3.8630 20 1 -0.1587 -4.3280 3.5358 21 7 0.4721 -3.1689 5.1997 22 6 1.2688 -2.1410 5.2449 23 6 1.6984 -1.3430 6.4521 24 6 2.9386 -0.5258 6.0696 25 6 2.6724 0.2439 4.7735 26 1 1.7138 0.7576 4.8476 27 6 3.7839 1.2719 4.5535 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 0.7086 1.1614 -3.4843 32 1 2.2489 -1.6319 1.1525 33 1 1.2696 -2.8162 2.0408 34 1 0.8945 -0.6717 6.7542 35 1 1.9416 -2.0187 7.2720 36 1 3.1689 0.1789 6.8687 37 1 3.7845 -1.1976 5.9238 38 1 3.5920 1.8232 3.6330 39 1 3.8088 1.9656 5.3940 40 1 4.7429 0.7594 4.4769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878535428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:33 Heat of formation + Delta-G solvation = -3.275932 kcal Electronic energy + Delta-G solvation = -22233.240958 eV Core-core repulsion = 19047.773312 eV Total energy + Delta-G solvation = -3185.467646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.62484 -40.54607 -37.89873 -36.53078 -34.42938 -33.50934 -32.24743 -30.53399 -30.45629 -27.56477 -27.29732 -24.94919 -23.58707 -21.90980 -21.72314 -21.21715 -19.78143 -18.87257 -18.57120 -17.41592 -17.10137 -16.31036 -15.98940 -15.64710 -15.59492 -14.99944 -14.95007 -14.45551 -14.36814 -14.08912 -13.67228 -13.57301 -13.24070 -13.00071 -12.82360 -12.80405 -12.69548 -12.35434 -12.25318 -12.15311 -12.03510 -11.77479 -11.46488 -11.39019 -11.09509 -10.62191 -10.50124 -10.34323 -9.68326 -9.41160 -8.15799 -6.33498 0.90120 1.45870 1.47666 1.55414 1.61465 1.88932 2.03951 2.38055 2.71800 3.14734 3.46147 3.78088 3.84221 4.00556 4.11593 4.34956 4.41903 4.53377 4.59216 4.67835 4.75514 4.77389 4.91442 4.93633 5.02179 5.04814 5.11626 5.16382 5.19499 5.33141 5.44978 5.54213 5.58897 5.65533 5.67177 5.70752 5.93532 6.11984 6.39868 6.69418 6.74845 7.01241 7.34661 7.61643 8.90136 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.005117 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.702330 B = 5470.413819 C = 6159.002450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.273 3.727 3 H -0.003 1.003 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.263 1.263 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.706 5.706 13 C 0.507 3.493 14 O -0.589 6.589 15 C -0.014 4.014 16 H 0.116 0.884 17 C -0.247 4.247 18 C 0.071 3.929 19 N -0.474 5.474 20 H 0.452 0.548 21 N -0.313 5.313 22 C 0.083 3.917 23 C -0.040 4.040 24 C -0.099 4.099 25 C -0.068 4.068 26 H 0.053 0.947 27 C -0.146 4.146 28 H 0.006 0.994 29 H 0.064 0.936 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.399 0.601 33 H 0.186 0.814 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.148 -8.778 15.301 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.169 3.831 3 H 0.015 0.985 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.188 1.188 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.356 5.356 13 C 0.294 3.706 14 O -0.470 6.470 15 C -0.036 4.036 16 H 0.134 0.866 17 C -0.259 4.259 18 C -0.076 4.076 19 N -0.184 5.184 20 H 0.299 0.701 21 N -0.136 5.136 22 C -0.085 4.085 23 C -0.078 4.078 24 C -0.137 4.137 25 C -0.087 4.087 26 H 0.072 0.928 27 C -0.203 4.203 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.236 0.764 33 H 0.203 0.797 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.117 -8.639 15.836 18.307 hybrid contribution 0.107 -0.236 -2.161 2.176 sum 3.224 -8.875 13.675 16.618 Atomic orbital electron populations 1.21871 0.98597 0.99255 0.99185 1.18283 0.90796 0.91932 0.82051 0.98532 1.21511 1.32513 1.13586 0.90709 0.90725 1.25785 0.94862 0.95540 1.02301 1.70052 1.37004 1.23985 1.24585 0.85420 0.78658 0.78724 0.77659 1.18791 1.21451 1.19588 1.46386 1.65562 1.13920 1.09693 1.21185 0.77061 0.86983 0.85328 1.90609 1.52373 1.18182 1.85849 1.19795 0.98606 0.92991 0.92211 0.86602 1.19773 1.09908 1.02583 0.93635 1.22442 0.94261 0.92230 0.98650 1.46300 1.39567 1.28154 1.04344 0.70148 1.76917 1.22734 1.16625 0.97352 1.22780 0.94864 0.94251 0.96640 1.20303 0.98583 0.96883 0.92075 1.21626 0.97095 0.98834 0.96151 1.20935 0.99696 0.94792 0.93250 0.92798 1.21838 0.97906 0.98763 1.01765 0.97499 0.91690 0.94124 0.92640 0.76438 0.79703 0.89548 0.87937 0.88261 0.90237 0.94692 0.91046 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.58 9.26 71.98 0.67 -5.91 16 2 C 0.27 13.93 2.56 44.24 0.11 14.05 16 3 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 4 C -0.55 -28.10 8.73 25.60 0.22 -27.88 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.02 0.80 5.30 84.66 0.45 1.25 16 7 N -0.92 -52.30 11.32 21.45 0.24 -52.05 16 8 Si 0.97 41.18 29.54 68.60 2.03 43.21 16 9 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 12 N -0.71 -28.48 4.47 -446.11 -2.00 -30.48 16 13 C 0.51 20.09 6.79 87.66 0.59 20.68 16 14 O -0.59 -28.55 13.94 -3.04 -0.04 -28.60 16 15 C -0.01 -0.40 2.33 -12.10 -0.03 -0.43 16 16 H 0.12 2.87 8.13 -2.39 -0.02 2.85 16 17 C -0.25 -6.81 5.41 -20.10 -0.11 -6.92 16 18 C 0.07 1.83 11.00 83.34 0.92 2.75 16 19 N -0.47 -11.09 7.37 -57.88 -0.43 -11.52 16 20 H 0.45 7.56 8.96 -213.17 -1.91 5.64 16 21 N -0.31 -8.48 12.68 -47.13 -0.60 -9.08 16 22 C 0.08 2.16 7.10 43.44 0.31 2.47 16 23 C -0.04 -0.75 6.31 30.05 0.19 -0.56 16 24 C -0.10 -1.74 5.18 30.74 0.16 -1.58 16 25 C -0.07 -1.75 1.77 -10.64 -0.02 -1.77 16 26 H 0.05 1.69 7.76 -2.38 -0.02 1.67 16 27 C -0.15 -3.69 8.95 71.98 0.64 -3.05 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.06 3.61 6.07 -2.38 -0.01 3.60 16 30 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.40 13.38 6.28 -92.71 -0.58 12.80 16 33 H 0.19 4.36 5.97 -2.91 -0.02 4.34 16 34 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 37 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.03 1.16 6.38 -2.39 -0.02 1.15 16 39 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -69.69 319.55 1.89 -67.79 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -1.42 Total: 27.62 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.11 Total: -6.90 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -2.78 Total: -103.13 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -69.69 1.89 -67.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878535428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.519 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds