Wall clock time and date at job start Mon Mar 30 2020 02:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.38684 * 2 1 4 4 C 1.53021 * 109.42832 * 240.12634 * 2 1 3 5 5 C 1.53374 * 109.75037 * 168.20384 * 4 2 1 6 6 C 1.50946 * 108.20324 * 50.65072 * 5 4 2 7 7 N 1.30134 * 128.28705 * 163.22248 * 6 5 4 8 8 N 1.40308 * 108.12798 * 180.16043 * 7 6 5 9 9 H 0.97001 * 126.00681 * 179.97438 * 8 7 6 10 10 C 1.35200 * 107.99078 * 0.26176 * 8 7 6 11 11 C 1.34575 * 107.61931 * 359.53954 * 10 8 7 12 12 C 1.50875 * 128.33266 * 180.32328 * 11 10 8 13 13 H 1.09004 * 109.75267 * 43.92308 * 12 11 10 14 14 C 1.50706 * 109.72181 * 283.29768 * 12 11 10 15 15 O 1.21288 * 119.99533 * 327.67171 * 14 12 11 16 16 N 1.34774 * 120.00327 * 147.67199 * 14 12 11 17 17 C 1.46494 * 119.99906 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47091 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47512 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99566 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00223 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46949 * 89.99822 * 23 21 19 25 25 H 1.48497 * 109.46848 * 209.99798 * 23 21 19 26 26 H 1.48499 * 109.47034 * 329.99903 * 23 21 19 27 27 H 1.09004 * 109.47323 * 173.96585 * 1 2 3 28 28 H 1.09003 * 109.47237 * 293.96562 * 1 2 3 29 29 H 1.08997 * 109.47245 * 53.96157 * 1 2 3 30 30 H 1.08995 * 109.42844 * 48.11596 * 4 2 1 31 31 H 1.09002 * 109.42088 * 288.28876 * 4 2 1 32 32 H 1.08994 * 109.71415 * 290.97746 * 5 4 2 33 33 H 1.08997 * 109.71518 * 170.33062 * 5 4 2 34 34 H 1.07995 * 126.19234 * 179.69294 * 10 8 7 35 35 H 0.97003 * 119.99815 * 0.02562 * 16 14 12 36 36 H 1.09000 * 109.47499 * 300.00104 * 17 16 14 37 37 H 1.09002 * 109.47276 * 60.00161 * 17 16 14 38 38 H 1.09001 * 109.47403 * 299.99706 * 18 17 16 39 39 H 1.09002 * 109.46921 * 59.99954 * 18 17 16 40 40 H 0.97009 * 119.99533 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7188 -1.2513 5 6 3.5440 -0.4722 -1.4146 6 6 4.2194 -0.7939 -0.1036 7 7 5.4828 -1.0109 0.1206 8 7 5.6444 -1.2738 1.4894 9 1 6.4820 -1.4706 1.9372 10 6 4.4266 -1.2109 2.0733 11 6 3.5306 -0.9099 1.1154 12 6 2.0403 -0.7204 1.2544 13 1 1.8263 -0.1179 2.1372 14 6 1.3664 -2.0626 1.3794 15 8 1.8293 -3.0288 0.8108 16 7 0.2496 -2.1893 2.1230 17 6 -0.4051 -3.4941 2.2449 18 6 -1.6408 -3.3634 3.1376 19 6 -2.3146 -4.7055 3.2626 20 1 -1.9025 -5.5659 2.7563 21 6 -3.4572 -4.8351 4.0232 22 7 -3.9588 -3.7876 4.6401 23 14 -4.2921 -6.4990 4.1786 24 1 -3.7315 -7.2270 5.3453 25 1 -5.7516 -6.3043 4.3713 26 1 -4.0567 -7.2882 2.9430 27 1 -0.3634 -1.0220 -0.1080 28 1 -0.3634 0.4174 0.9391 29 1 -0.3633 0.6046 -0.8310 30 1 1.5124 -0.3392 -2.1269 31 1 1.8553 -1.7888 -1.1546 32 1 3.7196 0.5722 -1.6722 33 1 3.9391 -1.1168 -2.1997 34 1 4.2121 -1.3706 3.1196 35 1 -0.1208 -1.4165 2.5775 36 1 -0.7053 -3.8438 1.2572 37 1 0.2887 -4.2087 2.6879 38 1 -1.3401 -3.0140 4.1254 39 1 -2.3346 -2.6486 2.6950 40 1 -4.7625 -3.8789 5.1756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879448998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:19 Heat of formation + Delta-G solvation = 10.425820 kcal Electronic energy + Delta-G solvation = -21633.973892 eV Core-core repulsion = 18449.100399 eV Total energy + Delta-G solvation = -3184.873493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.63593 -39.38739 -36.65085 -34.76650 -32.97838 -32.52072 -31.09119 -29.90093 -29.30350 -26.68347 -24.79360 -23.82928 -21.88194 -20.82405 -20.80523 -20.10648 -18.71854 -17.75243 -16.59557 -16.06564 -15.62571 -15.01690 -14.90222 -14.61625 -14.45191 -14.00090 -13.88719 -13.32754 -13.16746 -12.76991 -12.63784 -12.56930 -12.29143 -12.00615 -11.51511 -11.20352 -11.15813 -11.03193 -10.87695 -10.72751 -10.63359 -10.29217 -10.24561 -9.72108 -9.43346 -9.37193 -9.16191 -8.50545 -8.41670 -8.30071 -6.09427 -4.12012 1.88258 2.68014 2.81331 3.12421 3.29155 3.35428 3.39627 3.87982 4.34744 4.42399 4.67990 4.78369 4.82447 5.08169 5.16761 5.27769 5.36401 5.42320 5.42869 5.54234 5.58050 5.75974 5.79227 5.89725 5.91968 6.07724 6.14757 6.29739 6.36465 6.37681 6.46624 6.61973 6.76784 6.99707 7.24688 7.53203 7.62986 7.65707 7.89312 8.10464 8.29512 8.76879 8.94313 9.52895 11.02102 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.003712 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.667621 B = 7540.326794 C = 7946.988146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 H 0.080 0.920 4 C -0.121 4.121 5 C -0.036 4.036 6 C 0.097 3.903 7 N -0.295 5.295 8 N -0.486 5.486 9 H 0.438 0.562 10 C 0.070 3.930 11 C -0.211 4.211 12 C -0.026 4.026 13 H 0.092 0.908 14 C 0.514 3.486 15 O -0.542 6.542 16 N -0.723 5.723 17 C 0.123 3.877 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.175 0.825 35 H 0.396 0.604 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 11.432 -6.912 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.092 4.092 3 H 0.099 0.901 4 C -0.159 4.159 5 C -0.075 4.075 6 C -0.072 4.072 7 N -0.118 5.118 8 N -0.194 5.194 9 H 0.281 0.719 10 C -0.076 4.076 11 C -0.223 4.223 12 C -0.049 4.049 13 H 0.111 0.889 14 C 0.299 3.701 15 O -0.419 6.419 16 N -0.374 5.374 17 C 0.000 4.000 18 C -0.024 4.024 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.192 0.808 35 H 0.229 0.771 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.040 0.960 39 H 0.041 0.959 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.349 10.687 -7.706 20.228 hybrid contribution -1.049 -0.681 1.297 1.802 sum 14.300 10.006 -6.410 18.593 Atomic orbital electron populations 1.21976 0.94208 1.02963 1.02202 1.21046 0.95982 0.99102 0.93110 0.90117 1.21745 0.93829 1.02905 0.97391 1.20105 0.94376 1.01782 0.91243 1.22273 0.90457 0.97940 0.96488 1.76956 1.18430 1.23650 0.92734 1.46220 1.08392 1.58429 1.06317 0.71875 1.22031 0.85530 1.00563 0.99475 1.19450 0.94983 1.15059 0.92817 1.19770 0.90196 0.94826 1.00090 0.88938 1.20412 0.80624 0.90090 0.78927 1.90655 1.64569 1.40238 1.46460 1.46422 1.27126 1.13387 1.50426 1.21669 0.95409 0.82339 1.00560 1.19314 0.90747 0.98090 0.94282 1.21062 1.09871 0.94669 1.30383 0.92332 1.24983 0.97028 0.96821 0.95392 1.69955 1.22176 1.29229 1.31959 0.86534 0.78560 0.84005 0.78593 1.20595 1.21162 1.19730 0.91781 0.92103 0.92178 0.90904 0.89904 0.90029 0.90025 0.80835 0.77053 0.92739 0.92856 0.96039 0.95925 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 8.38 37.16 0.31 -1.38 16 2 C -0.07 -0.80 2.44 -90.41 -0.22 -1.02 16 3 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 4 C -0.12 -1.38 5.14 -26.53 -0.14 -1.51 16 5 C -0.04 -0.40 6.31 -27.57 -0.17 -0.57 16 6 C 0.10 1.33 7.10 -82.34 -0.58 0.74 16 7 N -0.30 -4.14 12.68 33.75 0.43 -3.71 16 8 N -0.49 -5.49 7.37 30.35 0.22 -5.27 16 9 H 0.44 3.37 8.96 -182.44 -1.64 1.73 16 10 C 0.07 0.82 11.95 -17.36 -0.21 0.61 16 11 C -0.21 -2.81 4.64 -104.98 -0.49 -3.30 16 12 C -0.03 -0.33 2.67 -92.64 -0.25 -0.57 16 13 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 14 C 0.51 8.43 5.15 -10.98 -0.06 8.38 16 15 O -0.54 -11.08 15.13 5.55 0.08 -10.99 16 16 N -0.72 -12.11 4.96 -60.30 -0.30 -12.41 16 17 C 0.12 2.56 5.61 -4.05 -0.02 2.54 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 27 H 0.06 0.85 7.05 -51.93 -0.37 0.49 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 31 H 0.08 1.22 6.35 -51.93 -0.33 0.89 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.40 5.73 8.47 -40.82 -0.35 5.38 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 327.73 15.07 4.94 4.94 Total: -1.00 -33.66 327.73 -8.57 -42.23 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.29 Total: 3.12 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -2.38 Total: -9.01 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 1.09 Total: -46.53 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.08 Total: -10.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.66 -8.57 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879448998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.654 kcal (2) G-P(sol) polarization free energy of solvation -33.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds