Wall clock time and date at job start Mon Mar 30 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.38684 * 2 1 4 4 C 1.53021 * 109.42832 * 240.12634 * 2 1 3 5 5 C 1.53374 * 109.75037 * 168.20384 * 4 2 1 6 6 C 1.50946 * 108.20324 * 50.65072 * 5 4 2 7 7 N 1.30134 * 128.28705 * 163.22248 * 6 5 4 8 8 N 1.40308 * 108.12798 * 180.16043 * 7 6 5 9 9 H 0.97001 * 126.00681 * 179.97438 * 8 7 6 10 10 C 1.35200 * 107.99078 * 0.26176 * 8 7 6 11 11 C 1.34575 * 107.61931 * 359.53954 * 10 8 7 12 12 C 1.50875 * 128.33266 * 180.32328 * 11 10 8 13 13 H 1.09004 * 109.75267 * 43.92308 * 12 11 10 14 14 C 1.50706 * 109.72181 * 283.29768 * 12 11 10 15 15 O 1.21288 * 119.99533 * 327.67171 * 14 12 11 16 16 N 1.34774 * 120.00327 * 147.67199 * 14 12 11 17 17 C 1.46494 * 119.99906 * 180.02562 * 16 14 12 18 18 C 1.52998 * 109.47091 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47512 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99566 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00223 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99949 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99963 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46949 * 89.99822 * 23 21 19 25 25 H 1.48497 * 109.46848 * 209.99798 * 23 21 19 26 26 H 1.48499 * 109.47034 * 329.99903 * 23 21 19 27 27 H 1.09004 * 109.47323 * 173.96585 * 1 2 3 28 28 H 1.09003 * 109.47237 * 293.96562 * 1 2 3 29 29 H 1.08997 * 109.47245 * 53.96157 * 1 2 3 30 30 H 1.08995 * 109.42844 * 48.11596 * 4 2 1 31 31 H 1.09002 * 109.42088 * 288.28876 * 4 2 1 32 32 H 1.08994 * 109.71415 * 290.97746 * 5 4 2 33 33 H 1.08997 * 109.71518 * 170.33062 * 5 4 2 34 34 H 1.07995 * 126.19234 * 179.69294 * 10 8 7 35 35 H 0.97003 * 119.99815 * 0.02562 * 16 14 12 36 36 H 1.09000 * 109.47499 * 300.00104 * 17 16 14 37 37 H 1.09002 * 109.47276 * 60.00161 * 17 16 14 38 38 H 1.09001 * 109.47403 * 299.99706 * 18 17 16 39 39 H 1.09002 * 109.46921 * 59.99954 * 18 17 16 40 40 H 0.97009 * 119.99533 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0282 0.0000 4 6 2.0390 -0.7188 -1.2513 5 6 3.5440 -0.4722 -1.4146 6 6 4.2194 -0.7939 -0.1036 7 7 5.4828 -1.0109 0.1206 8 7 5.6444 -1.2738 1.4894 9 1 6.4820 -1.4706 1.9372 10 6 4.4266 -1.2109 2.0733 11 6 3.5306 -0.9099 1.1154 12 6 2.0403 -0.7204 1.2544 13 1 1.8263 -0.1179 2.1372 14 6 1.3664 -2.0626 1.3794 15 8 1.8293 -3.0288 0.8108 16 7 0.2496 -2.1893 2.1230 17 6 -0.4051 -3.4941 2.2449 18 6 -1.6408 -3.3634 3.1376 19 6 -2.3146 -4.7055 3.2626 20 1 -1.9025 -5.5659 2.7563 21 6 -3.4572 -4.8351 4.0232 22 7 -3.9588 -3.7876 4.6401 23 14 -4.2921 -6.4990 4.1786 24 1 -3.7315 -7.2270 5.3453 25 1 -5.7516 -6.3043 4.3713 26 1 -4.0567 -7.2882 2.9430 27 1 -0.3634 -1.0220 -0.1080 28 1 -0.3634 0.4174 0.9391 29 1 -0.3633 0.6046 -0.8310 30 1 1.5124 -0.3392 -2.1269 31 1 1.8553 -1.7888 -1.1546 32 1 3.7196 0.5722 -1.6722 33 1 3.9391 -1.1168 -2.1997 34 1 4.2121 -1.3706 3.1196 35 1 -0.1208 -1.4165 2.5775 36 1 -0.7053 -3.8438 1.2572 37 1 0.2887 -4.2087 2.6879 38 1 -1.3401 -3.0140 4.1254 39 1 -2.3346 -2.6486 2.6950 40 1 -4.7625 -3.8789 5.1756 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879448998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:18 Heat of formation + Delta-G solvation = -12.584359 kcal Electronic energy + Delta-G solvation = -21634.971689 eV Core-core repulsion = 18449.100399 eV Total energy + Delta-G solvation = -3185.871289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.59034 -40.65127 -37.70467 -36.45606 -34.78845 -33.62544 -32.05488 -31.45592 -30.46522 -27.81058 -26.51710 -24.81959 -23.29025 -22.39134 -21.69946 -21.28322 -19.78020 -18.73713 -18.50924 -17.43996 -16.80666 -16.53949 -16.29800 -15.95435 -15.65643 -15.25091 -14.93374 -14.50345 -14.39170 -14.19395 -13.87223 -13.81028 -13.50223 -13.18216 -12.93167 -12.88870 -12.51828 -12.42386 -12.15908 -12.06803 -11.84483 -11.64620 -11.58510 -11.41736 -11.14271 -10.62158 -10.58302 -10.30321 -9.88901 -9.41036 -8.22575 -6.32521 0.95981 1.42182 1.42469 1.53835 1.66548 1.82239 2.01531 2.37826 2.60616 3.12192 3.44620 3.79188 3.88902 3.93042 4.13346 4.26873 4.35418 4.52622 4.54687 4.57551 4.59681 4.67346 4.70628 4.89649 4.90105 4.96933 5.01613 5.09049 5.20499 5.26651 5.35325 5.43401 5.53604 5.58805 5.62738 5.69534 5.82590 6.19541 6.46504 6.72905 6.78025 6.81190 7.36702 7.44503 8.89002 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029231 B = 0.003712 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.667621 B = 7540.326794 C = 7946.988146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 H 0.109 0.891 4 C -0.118 4.118 5 C -0.035 4.035 6 C 0.084 3.916 7 N -0.326 5.326 8 N -0.478 5.478 9 H 0.451 0.549 10 C 0.074 3.926 11 C -0.239 4.239 12 C -0.017 4.017 13 H 0.121 0.879 14 C 0.518 3.482 15 O -0.585 6.585 16 N -0.716 5.716 17 C 0.143 3.857 18 C 0.025 3.975 19 C -0.547 4.547 20 H 0.055 0.945 21 C 0.010 3.990 22 N -0.925 5.925 23 Si 0.961 3.039 24 H -0.273 1.273 25 H -0.279 1.279 26 H -0.268 1.268 27 H 0.031 0.969 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.202 0.798 35 H 0.409 0.591 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.009 0.991 39 H 0.010 0.990 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.272 12.498 -6.736 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.088 4.088 3 H 0.128 0.872 4 C -0.156 4.156 5 C -0.074 4.074 6 C -0.085 4.085 7 N -0.149 5.149 8 N -0.187 5.187 9 H 0.298 0.702 10 C -0.073 4.073 11 C -0.251 4.251 12 C -0.040 4.040 13 H 0.139 0.861 14 C 0.306 3.694 15 O -0.465 6.465 16 N -0.367 5.367 17 C 0.019 3.981 18 C -0.013 4.013 19 C -0.586 4.586 20 H 0.073 0.927 21 C -0.189 4.189 22 N -0.564 5.564 23 Si 0.786 3.214 24 H -0.198 1.198 25 H -0.204 1.204 26 H -0.193 1.193 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.219 0.781 35 H 0.245 0.755 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.621 11.780 -7.525 20.962 hybrid contribution -1.079 -1.016 1.246 1.936 sum 14.542 10.763 -6.279 19.151 Atomic orbital electron populations 1.21971 0.94240 1.01369 1.03612 1.21102 0.95811 1.00107 0.91776 0.87246 1.21706 0.94501 1.00575 0.98792 1.20201 0.93738 1.03241 0.90248 1.22702 0.90529 0.97668 0.97562 1.76894 1.18970 1.24867 0.94165 1.46277 1.09172 1.57601 1.05682 0.70243 1.22536 0.85264 0.98866 1.00590 1.19675 0.95420 1.16727 0.93284 1.19803 0.89535 0.92366 1.02263 0.86134 1.21161 0.79713 0.91292 0.77283 1.90638 1.65618 1.42245 1.47954 1.46224 1.27359 1.12229 1.50911 1.21123 0.93984 0.84224 0.98720 1.19114 0.91573 0.96528 0.94065 1.21472 1.10606 0.95851 1.30637 0.92679 1.25810 0.97622 1.00538 0.94925 1.70049 1.22681 1.31203 1.32482 0.85505 0.77614 0.79531 0.78760 1.19821 1.20430 1.19263 0.94939 0.91078 0.90324 0.88762 0.93829 0.87436 0.90324 0.78086 0.75491 0.94163 0.94164 0.97237 0.97151 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 8.38 71.98 0.60 -2.45 16 2 C -0.07 -1.34 2.44 -10.66 -0.03 -1.37 16 3 H 0.11 1.59 8.10 -2.39 -0.02 1.57 16 4 C -0.12 -2.54 5.14 30.73 0.16 -2.39 16 5 C -0.04 -0.73 6.31 30.05 0.19 -0.54 16 6 C 0.08 2.18 7.10 43.44 0.31 2.49 16 7 N -0.33 -8.84 12.68 -47.13 -0.60 -9.44 16 8 N -0.48 -10.14 7.37 -57.88 -0.43 -10.57 16 9 H 0.45 6.31 8.96 -213.18 -1.91 4.40 16 10 C 0.07 1.60 11.95 83.33 1.00 2.60 16 11 C -0.24 -5.99 4.64 -20.10 -0.09 -6.08 16 12 C -0.02 -0.40 2.67 -12.10 -0.03 -0.43 16 13 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 14 C 0.52 16.81 5.15 87.66 0.45 17.26 16 15 O -0.58 -24.36 15.13 -3.05 -0.05 -24.41 16 16 N -0.72 -23.87 4.96 -463.06 -2.30 -26.17 16 17 C 0.14 6.13 5.61 86.38 0.48 6.62 16 18 C 0.02 1.22 5.09 29.85 0.15 1.38 16 19 C -0.55 -30.48 9.11 25.60 0.23 -30.25 16 20 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 21 C 0.01 0.56 5.46 84.65 0.46 1.02 16 22 N -0.92 -53.59 13.29 21.44 0.28 -53.30 16 23 Si 0.96 43.44 29.54 68.60 2.03 45.46 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H 0.03 0.84 7.05 -2.39 -0.02 0.83 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 31 H 0.04 1.30 6.35 -2.39 -0.02 1.28 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.20 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.41 11.48 8.47 -92.71 -0.79 10.69 16 36 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 Total: -1.00 -73.29 327.73 1.20 -72.09 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -1.64 Total: 18.48 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 3.89 Total: -12.15 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -3.03 Total: -99.47 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -73.29 1.20 -72.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879448998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.506 kcal (2) G-P(sol) polarization free energy of solvation -73.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds