Wall clock time and date at job start Mon Mar 30 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.39027 * 2 1 4 4 C 1.53028 * 109.42963 * 240.12206 * 2 1 3 5 5 C 1.53367 * 109.74606 * 168.19849 * 4 2 1 6 6 C 1.50955 * 108.20874 * 50.64942 * 5 4 2 7 7 N 1.30128 * 128.28955 * 163.16994 * 6 5 4 8 8 N 1.40312 * 108.12395 * 180.30789 * 7 6 5 9 9 H 0.96995 * 126.00028 * 179.97438 * 8 7 6 10 10 C 1.35199 * 107.99143 * 359.95350 * 8 7 6 11 11 C 1.34570 * 107.62258 * 359.96403 * 10 8 7 12 12 C 1.50886 * 128.33030 * 180.12971 * 11 10 8 13 13 H 1.08992 * 109.71532 * 283.15863 * 12 11 10 14 14 C 1.50693 * 109.71311 * 43.77094 * 12 11 10 15 15 O 1.21283 * 120.00454 * 120.00360 * 14 12 11 16 16 N 1.34777 * 119.99999 * 299.98967 * 14 12 11 17 17 C 1.46499 * 120.00092 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46983 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 H 1.09008 * 109.47253 * 300.13226 * 1 2 3 28 28 H 1.09003 * 109.47076 * 60.12493 * 1 2 3 29 29 H 1.08999 * 109.47736 * 180.12899 * 1 2 3 30 30 H 1.08994 * 109.42108 * 48.11462 * 4 2 1 31 31 H 1.09002 * 109.42504 * 288.28560 * 4 2 1 32 32 H 1.09001 * 109.72023 * 290.97006 * 5 4 2 33 33 H 1.09003 * 109.75552 * 170.34682 * 5 4 2 34 34 H 1.08000 * 126.19003 * 179.97438 * 10 8 7 35 35 H 0.96996 * 120.00106 * 0.02562 * 16 14 12 36 36 H 1.08996 * 109.47171 * 60.00790 * 17 16 14 37 37 H 1.08996 * 109.47177 * 300.00739 * 17 16 14 38 38 H 1.09003 * 109.46825 * 60.00577 * 18 17 16 39 39 H 1.08996 * 109.47396 * 300.00150 * 18 17 16 40 40 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0281 0.0000 4 6 2.0390 -0.7189 -1.2513 5 6 3.5439 -0.4722 -1.4145 6 6 4.2195 -0.7936 -0.1034 7 7 5.4827 -1.0113 0.1206 8 7 5.6439 -1.2769 1.4889 9 1 6.4813 -1.4747 1.9365 10 6 4.4269 -1.2081 2.0738 11 6 3.5305 -0.9102 1.1154 12 6 2.0401 -0.7205 1.2544 13 1 1.5528 -1.6912 1.3456 14 6 1.7454 0.1130 2.4748 15 8 1.1617 1.1700 2.3608 16 7 2.1303 -0.3161 3.6930 17 6 1.8434 0.4939 4.8794 18 6 2.3829 -0.2147 6.1235 19 6 2.0872 0.6183 7.3441 20 1 1.5669 1.5593 7.2426 21 6 2.4818 0.1797 8.5902 22 7 3.1159 -0.9659 8.7138 23 14 2.1146 1.2119 10.1032 24 1 3.2413 2.1474 10.3496 25 1 1.9436 0.3222 11.2798 26 1 0.8670 1.9867 9.8830 27 1 -0.3634 0.5159 0.8889 28 1 -0.3633 0.5119 -0.8911 29 1 -0.3634 -1.0276 0.0023 30 1 1.5124 -0.3393 -2.1268 31 1 1.8555 -1.7890 -1.1546 32 1 3.7195 0.5722 -1.6724 33 1 3.9398 -1.1163 -2.1997 34 1 4.2129 -1.3639 3.1209 35 1 2.5974 -1.1614 3.7842 36 1 0.7660 0.6281 4.9759 37 1 2.3232 1.4675 4.7794 38 1 3.4604 -0.3485 6.0268 39 1 1.9034 -1.1884 6.2237 40 1 3.3062 -1.5020 7.9282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879449001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:28 Heat of formation + Delta-G solvation = 7.068763 kcal Electronic energy + Delta-G solvation = -21643.495941 eV Core-core repulsion = 18458.476875 eV Total energy + Delta-G solvation = -3185.019066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76153 -39.43346 -36.94603 -35.03082 -33.25624 -32.65299 -31.31117 -29.71068 -29.23773 -26.70878 -24.51184 -23.95368 -22.04636 -21.01583 -20.87901 -20.16602 -18.96538 -17.84934 -17.07886 -16.41119 -15.55196 -15.16752 -14.99625 -14.80210 -14.29203 -14.05788 -13.77856 -13.61507 -13.37623 -12.95363 -12.83639 -12.29798 -12.21643 -12.00429 -11.70099 -11.64086 -11.18927 -11.01225 -10.94558 -10.66824 -10.56455 -10.45521 -10.20976 -10.03713 -9.54936 -9.50630 -8.74979 -8.58893 -8.49852 -8.40444 -6.48637 -4.18706 1.77113 2.51282 2.70825 3.04125 3.39623 3.42980 3.58815 3.63965 4.26904 4.47615 4.57092 4.66822 4.79567 4.90919 5.14088 5.24377 5.29608 5.32297 5.37540 5.44948 5.59434 5.65643 5.75333 5.82344 5.88329 5.93941 6.06236 6.17210 6.19032 6.38427 6.38937 6.49218 6.56302 6.79204 7.14997 7.18607 7.28747 7.54072 7.89142 8.04683 8.33999 8.58455 8.75525 9.53049 10.92403 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004075 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.336186 B = 6870.290120 C = 7757.353873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 H 0.082 0.918 4 C -0.111 4.111 5 C -0.040 4.040 6 C 0.090 3.910 7 N -0.290 5.290 8 N -0.480 5.480 9 H 0.441 0.559 10 C 0.072 3.928 11 C -0.233 4.233 12 C -0.023 4.023 13 H 0.100 0.900 14 C 0.516 3.484 15 O -0.541 6.541 16 N -0.727 5.727 17 C 0.128 3.872 18 C 0.000 4.000 19 C -0.602 4.602 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.911 5.911 23 Si 1.073 2.927 24 H -0.287 1.287 25 H -0.284 1.284 26 H -0.287 1.287 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.176 0.824 35 H 0.391 0.609 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.011 0.989 39 H 0.013 0.987 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -3.131 -19.050 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.088 4.088 3 H 0.100 0.900 4 C -0.149 4.149 5 C -0.079 4.079 6 C -0.079 4.079 7 N -0.113 5.113 8 N -0.188 5.188 9 H 0.285 0.715 10 C -0.075 4.075 11 C -0.245 4.245 12 C -0.046 4.046 13 H 0.118 0.882 14 C 0.302 3.698 15 O -0.418 6.418 16 N -0.378 5.378 17 C 0.006 3.994 18 C -0.038 4.038 19 C -0.640 4.640 20 H 0.072 0.928 21 C -0.186 4.186 22 N -0.547 5.547 23 Si 0.901 3.099 24 H -0.214 1.214 25 H -0.209 1.209 26 H -0.213 1.213 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.193 0.807 35 H 0.226 0.774 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.032 0.968 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.454 -2.377 -17.958 18.173 hybrid contribution -0.126 -0.606 -0.715 0.946 sum 1.329 -2.983 -18.673 18.957 Atomic orbital electron populations 1.21900 0.94401 1.01464 1.02968 1.20939 0.96137 0.99974 0.91727 0.89977 1.21664 0.93918 1.01210 0.98060 1.20162 0.94268 1.02426 0.91011 1.22312 0.90473 0.98558 0.96525 1.76983 1.18090 1.23242 0.92939 1.46299 1.08616 1.57662 1.06196 0.71460 1.22237 0.85600 1.00342 0.99304 1.19673 0.95591 1.16140 0.93064 1.19814 0.91164 0.99564 0.94035 0.88212 1.20450 0.78565 0.86426 0.84381 1.90649 1.41584 1.23319 1.86266 1.46485 1.59345 1.24704 1.07303 1.21553 1.00305 0.94256 0.83283 1.19454 0.95694 0.96396 0.92235 1.21915 1.41804 1.07818 0.92497 0.92819 1.25877 0.93840 0.97539 1.01355 1.70788 1.38119 1.12147 1.33605 0.83481 0.76277 0.75060 0.75102 1.21366 1.20921 1.21292 0.90893 0.92699 0.93182 0.90577 0.91405 0.89704 0.89916 0.80671 0.77439 0.92329 0.92449 0.97086 0.96840 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 2 C -0.07 -0.79 1.77 -90.40 -0.16 -0.95 16 3 H 0.08 1.10 7.77 -51.93 -0.40 0.70 16 4 C -0.11 -0.96 5.18 -26.53 -0.14 -1.10 16 5 C -0.04 -0.38 6.31 -27.57 -0.17 -0.55 16 6 C 0.09 1.13 7.10 -82.34 -0.58 0.55 16 7 N -0.29 -3.88 12.68 33.75 0.43 -3.45 16 8 N -0.48 -5.54 7.37 30.35 0.22 -5.32 16 9 H 0.44 3.76 8.96 -182.44 -1.64 2.12 16 10 C 0.07 0.87 10.99 -17.37 -0.19 0.68 16 11 C -0.23 -2.98 5.41 -104.98 -0.57 -3.55 16 12 C -0.02 -0.30 2.33 -92.63 -0.22 -0.51 16 13 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 14 C 0.52 8.50 6.84 -10.99 -0.08 8.43 16 15 O -0.54 -10.70 14.25 5.55 0.08 -10.62 16 16 N -0.73 -12.14 4.97 -60.30 -0.30 -12.44 16 17 C 0.13 2.68 5.61 -4.04 -0.02 2.66 16 18 C 0.00 -0.01 4.40 -27.88 -0.12 -0.13 16 19 C -0.60 -16.64 9.11 -34.44 -0.31 -16.96 16 20 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 21 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 22 N -0.91 -26.84 13.65 55.43 0.76 -26.08 16 23 Si 1.07 24.82 29.90 -169.99 -5.08 19.73 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.07 1.01 6.36 -51.92 -0.33 0.68 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.18 1.92 5.93 -52.49 -0.31 1.61 16 35 H 0.39 5.56 6.14 -40.82 -0.25 5.30 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 39 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 40 H 0.27 7.73 7.22 -40.82 -0.29 7.44 16 LS Contribution 322.93 15.07 4.87 4.87 Total: -1.00 -33.24 322.93 -8.42 -41.65 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.06 Total: 4.02 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.33 Total: -12.37 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 1.11 Total: -47.29 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -5.08 Total: 19.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.24 -8.42 -41.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879449001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.722 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds