Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.39027 * 2 1 4 4 C 1.53028 * 109.42963 * 240.12206 * 2 1 3 5 5 C 1.53367 * 109.74606 * 168.19849 * 4 2 1 6 6 C 1.50955 * 108.20874 * 50.64942 * 5 4 2 7 7 N 1.30128 * 128.28955 * 163.16994 * 6 5 4 8 8 N 1.40312 * 108.12395 * 180.30789 * 7 6 5 9 9 H 0.96995 * 126.00028 * 179.97438 * 8 7 6 10 10 C 1.35199 * 107.99143 * 359.95350 * 8 7 6 11 11 C 1.34570 * 107.62258 * 359.96403 * 10 8 7 12 12 C 1.50886 * 128.33030 * 180.12971 * 11 10 8 13 13 H 1.08992 * 109.71532 * 283.15863 * 12 11 10 14 14 C 1.50693 * 109.71311 * 43.77094 * 12 11 10 15 15 O 1.21283 * 120.00454 * 120.00360 * 14 12 11 16 16 N 1.34777 * 119.99999 * 299.98967 * 14 12 11 17 17 C 1.46499 * 120.00092 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46983 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.47038 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00159 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00120 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00089 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 269.99556 * 23 21 19 25 25 H 1.48503 * 109.47261 * 149.99737 * 23 21 19 26 26 H 1.48500 * 109.47454 * 29.99730 * 23 21 19 27 27 H 1.09008 * 109.47253 * 300.13226 * 1 2 3 28 28 H 1.09003 * 109.47076 * 60.12493 * 1 2 3 29 29 H 1.08999 * 109.47736 * 180.12899 * 1 2 3 30 30 H 1.08994 * 109.42108 * 48.11462 * 4 2 1 31 31 H 1.09002 * 109.42504 * 288.28560 * 4 2 1 32 32 H 1.09001 * 109.72023 * 290.97006 * 5 4 2 33 33 H 1.09003 * 109.75552 * 170.34682 * 5 4 2 34 34 H 1.08000 * 126.19003 * 179.97438 * 10 8 7 35 35 H 0.96996 * 120.00106 * 0.02562 * 16 14 12 36 36 H 1.08996 * 109.47171 * 60.00790 * 17 16 14 37 37 H 1.08996 * 109.47177 * 300.00739 * 17 16 14 38 38 H 1.09003 * 109.46825 * 60.00577 * 18 17 16 39 39 H 1.08996 * 109.47396 * 300.00150 * 18 17 16 40 40 H 0.96998 * 119.99255 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0281 0.0000 4 6 2.0390 -0.7189 -1.2513 5 6 3.5439 -0.4722 -1.4145 6 6 4.2195 -0.7936 -0.1034 7 7 5.4827 -1.0113 0.1206 8 7 5.6439 -1.2769 1.4889 9 1 6.4813 -1.4747 1.9365 10 6 4.4269 -1.2081 2.0738 11 6 3.5305 -0.9102 1.1154 12 6 2.0401 -0.7205 1.2544 13 1 1.5528 -1.6912 1.3456 14 6 1.7454 0.1130 2.4748 15 8 1.1617 1.1700 2.3608 16 7 2.1303 -0.3161 3.6930 17 6 1.8434 0.4939 4.8794 18 6 2.3829 -0.2147 6.1235 19 6 2.0872 0.6183 7.3441 20 1 1.5669 1.5593 7.2426 21 6 2.4818 0.1797 8.5902 22 7 3.1159 -0.9659 8.7138 23 14 2.1146 1.2119 10.1032 24 1 3.2413 2.1474 10.3496 25 1 1.9436 0.3222 11.2798 26 1 0.8670 1.9867 9.8830 27 1 -0.3634 0.5159 0.8889 28 1 -0.3633 0.5119 -0.8911 29 1 -0.3634 -1.0276 0.0023 30 1 1.5124 -0.3393 -2.1268 31 1 1.8555 -1.7890 -1.1546 32 1 3.7195 0.5722 -1.6724 33 1 3.9398 -1.1163 -2.1997 34 1 4.2129 -1.3639 3.1209 35 1 2.5974 -1.1614 3.7842 36 1 0.7660 0.6281 4.9759 37 1 2.3232 1.4675 4.7794 38 1 3.4604 -0.3485 6.0268 39 1 1.9034 -1.1884 6.2237 40 1 3.3062 -1.5020 7.9282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879449001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = -15.074938 kcal Electronic energy + Delta-G solvation = -21644.456164 eV Core-core repulsion = 18458.476875 eV Total energy + Delta-G solvation = -3185.979289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.72648 -40.73794 -37.95855 -36.71443 -35.09937 -33.66043 -32.41953 -30.92262 -30.59079 -27.80200 -26.27010 -24.92751 -23.63872 -22.38979 -21.82523 -21.42652 -19.84271 -19.06657 -18.72783 -17.87970 -16.96657 -16.51516 -16.13706 -15.78460 -15.65768 -15.38240 -15.06552 -14.98566 -14.64844 -14.14030 -13.94368 -13.70666 -13.68263 -13.28264 -12.91725 -12.82518 -12.40205 -12.29772 -12.10750 -12.07543 -11.90625 -11.87023 -11.54321 -11.48720 -10.98657 -10.62600 -10.58560 -10.42746 -10.07639 -9.51899 -8.72346 -6.43360 0.81735 1.47394 1.53555 1.61161 1.73010 1.79849 1.89156 2.28535 2.56594 3.12776 3.36552 3.68833 3.71663 3.85768 4.00615 4.25914 4.28570 4.33870 4.39502 4.45405 4.52374 4.61555 4.66887 4.71180 4.84606 4.95397 5.00641 5.09984 5.11513 5.16221 5.28252 5.32793 5.38176 5.51960 5.54364 5.60681 5.93674 6.13574 6.31136 6.48448 6.60140 6.61994 7.23490 7.35943 8.70185 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024527 B = 0.004075 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.336186 B = 6870.290120 C = 7757.353873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 H 0.057 0.943 4 C -0.100 4.100 5 C -0.041 4.041 6 C 0.085 3.915 7 N -0.313 5.313 8 N -0.475 5.475 9 H 0.452 0.548 10 C 0.068 3.932 11 C -0.248 4.248 12 C -0.013 4.013 13 H 0.122 0.878 14 C 0.515 3.485 15 O -0.575 6.575 16 N -0.720 5.720 17 C 0.148 3.852 18 C 0.007 3.993 19 C -0.623 4.623 20 H 0.047 0.953 21 C -0.029 4.029 22 N -0.933 5.933 23 Si 1.117 2.883 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.273 1.273 27 H 0.038 0.962 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.184 0.816 35 H 0.405 0.595 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 -3.586 -20.268 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.087 4.087 3 H 0.076 0.924 4 C -0.138 4.138 5 C -0.080 4.080 6 C -0.084 4.084 7 N -0.136 5.136 8 N -0.184 5.184 9 H 0.298 0.702 10 C -0.079 4.079 11 C -0.261 4.261 12 C -0.035 4.035 13 H 0.139 0.861 14 C 0.302 3.698 15 O -0.455 6.455 16 N -0.372 5.372 17 C 0.024 3.976 18 C -0.030 4.030 19 C -0.661 4.661 20 H 0.066 0.934 21 C -0.228 4.228 22 N -0.569 5.569 23 Si 0.938 3.062 24 H -0.199 1.199 25 H -0.206 1.206 26 H -0.198 1.198 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.242 0.758 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.297 -2.859 -19.209 19.464 hybrid contribution -0.052 -0.458 -0.360 0.585 sum 1.246 -3.317 -19.569 19.887 Atomic orbital electron populations 1.21856 0.94074 1.02309 1.02137 1.20950 0.96379 0.98888 0.92497 0.92397 1.21625 0.93371 1.01563 0.97249 1.20326 0.94536 1.03044 0.90057 1.22818 0.90198 0.97740 0.97621 1.76950 1.18728 1.24213 0.93718 1.46346 1.09038 1.57178 1.05868 0.70176 1.22420 0.85881 0.99948 0.99650 1.19782 0.95597 1.17047 0.93624 1.19821 0.91598 0.99741 0.92363 0.86067 1.21201 0.77319 0.86257 0.84987 1.90637 1.43018 1.25072 1.86767 1.46294 1.59645 1.24885 1.06413 1.21035 0.98984 0.93755 0.83833 1.19300 0.95360 0.95781 0.92560 1.22332 1.41602 1.08064 0.94116 0.93422 1.27274 0.93076 0.97857 1.04569 1.70900 1.39629 1.13075 1.33343 0.82920 0.77155 0.74111 0.71970 1.19874 1.20579 1.19773 0.94242 0.91029 0.91435 0.88160 0.90260 0.89363 0.88077 0.79947 0.75814 0.93624 0.93967 0.97431 0.97438 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.95 71.98 0.64 -2.36 16 2 C -0.07 -1.45 1.77 -10.65 -0.02 -1.47 16 3 H 0.06 1.52 7.77 -2.39 -0.02 1.50 16 4 C -0.10 -1.44 5.18 30.73 0.16 -1.28 16 5 C -0.04 -0.67 6.31 30.05 0.19 -0.48 16 6 C 0.08 1.99 7.10 43.44 0.31 2.30 16 7 N -0.31 -7.97 12.68 -47.13 -0.60 -8.57 16 8 N -0.48 -10.49 7.37 -57.88 -0.43 -10.92 16 9 H 0.45 7.31 8.96 -213.19 -1.91 5.40 16 10 C 0.07 1.59 10.99 83.33 0.92 2.51 16 11 C -0.25 -6.03 5.41 -20.10 -0.11 -6.14 16 12 C -0.01 -0.32 2.33 -12.10 -0.03 -0.34 16 13 H 0.12 2.40 8.13 -2.39 -0.02 2.38 16 14 C 0.51 16.84 6.84 87.65 0.60 17.44 16 15 O -0.58 -23.13 14.25 -3.04 -0.04 -23.18 16 16 N -0.72 -23.96 4.97 -463.07 -2.30 -26.26 16 17 C 0.15 6.27 5.61 86.38 0.48 6.75 16 18 C 0.01 0.36 4.40 29.85 0.13 0.49 16 19 C -0.62 -34.72 9.11 25.60 0.23 -34.49 16 20 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 21 C -0.03 -1.64 5.46 84.65 0.46 -1.18 16 22 N -0.93 -55.12 13.65 21.45 0.29 -54.83 16 23 Si 1.12 49.37 29.90 68.60 2.05 51.42 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H 0.04 1.08 6.36 -2.38 -0.02 1.06 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.00 8.09 -2.39 -0.02 0.99 16 31 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.18 3.84 5.93 -2.91 -0.02 3.82 16 35 H 0.40 11.25 6.14 -92.71 -0.57 10.69 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 39 H 0.01 0.37 8.01 -2.39 -0.02 0.35 16 40 H 0.26 15.19 7.22 -92.71 -0.67 14.52 16 Total: -1.00 -71.43 322.93 1.63 -69.80 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -1.32 Total: 20.78 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.97 Total: -18.24 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.03 Total: -100.58 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.04 Total: -23.18 kcal Atomic # 14 Polarization: 49.37 SS G_CDS: 2.05 Total: 51.42 kcal Total: -71.43 1.63 -69.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879449001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.722 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds