Wall clock time and date at job start Mon Mar 30 2020 01:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 O 1.42905 * 109.46973 * 180.02562 * 3 2 1 5 5 C 1.35514 * 116.99699 * 180.02562 * 4 3 2 6 6 C 1.39437 * 120.46718 * 180.02562 * 5 4 3 7 7 C 1.38197 * 118.51066 * 180.02562 * 6 5 4 8 8 N 1.32463 * 119.26795 * 359.97438 * 7 6 5 9 9 C 1.32463 * 120.88801 * 0.02562 * 8 7 6 10 10 N 1.38395 * 119.18796 * 179.97438 * 9 8 7 11 11 C 1.46496 * 120.00062 * 0.02562 * 10 9 8 12 12 C 1.53000 * 109.47439 * 181.60403 * 11 10 9 13 13 C 1.50697 * 115.54966 * 39.67547 * 12 11 10 14 14 H 1.08003 * 120.00223 * 264.51704 * 13 12 11 15 15 C 1.37882 * 119.99868 * 84.51184 * 13 12 11 16 16 N 1.31509 * 119.99918 * 352.96799 * 15 13 12 17 17 Si 1.86803 * 119.99808 * 172.97405 * 15 13 12 18 18 H 1.48494 * 109.47439 * 89.99941 * 17 15 13 19 19 H 1.48500 * 109.46898 * 209.99967 * 17 15 13 20 20 H 1.48502 * 109.46899 * 329.99557 * 17 15 13 21 21 C 1.52999 * 117.49885 * 253.97117 * 12 11 10 22 22 C 1.52996 * 60.00109 * 252.51140 * 21 12 11 23 23 N 1.32489 * 121.62387 * 359.72208 * 9 8 7 24 24 H 1.08997 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46830 * 299.99458 * 1 2 3 26 26 H 1.08996 * 109.47379 * 59.99497 * 1 2 3 27 27 H 1.09006 * 109.46830 * 240.00542 * 2 1 3 28 28 H 1.08996 * 109.47379 * 120.00503 * 2 1 3 29 29 H 1.08998 * 109.47894 * 300.00464 * 3 2 1 30 30 H 1.09006 * 109.46797 * 60.00522 * 3 2 1 31 31 H 1.08008 * 120.74490 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.36448 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99720 * 180.02562 * 10 9 8 34 34 H 1.09008 * 109.46937 * 301.60167 * 11 10 9 35 35 H 1.09006 * 109.47284 * 61.59731 * 11 10 9 36 36 H 0.97003 * 119.99915 * 185.03232 * 16 15 13 37 37 H 1.09006 * 117.49642 * 0.02562 * 21 12 11 38 38 H 1.09002 * 117.50210 * 145.01378 * 21 12 11 39 39 H 1.09004 * 117.49119 * 252.51700 * 22 21 12 40 40 H 1.08999 * 117.52460 * 107.47972 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0842 2.6498 -0.0001 6 6 5.4761 2.7342 -0.0012 7 6 6.0610 3.9863 -0.0002 8 7 5.2883 5.0621 0.0013 9 6 3.9683 4.9512 0.0023 10 7 3.1946 6.0987 0.0044 11 6 3.8370 7.4153 0.0049 12 6 2.7649 8.5060 0.0477 13 6 1.5863 8.2241 0.9434 14 1 0.6853 7.7944 0.5312 15 6 1.6583 8.5146 2.2894 16 7 2.7970 8.9069 2.8174 17 14 0.1383 8.3508 3.3628 18 1 0.0696 6.9748 3.9170 19 1 0.2111 9.3300 4.4768 20 1 -1.0742 8.6173 2.5479 21 6 2.5026 9.2897 -1.2400 22 6 3.2299 9.9587 -0.0719 23 7 3.3704 3.7689 -0.0036 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 6.0834 1.8410 -0.0020 32 1 7.1364 4.0864 -0.0014 33 1 2.2270 6.0312 0.0055 34 1 4.4814 7.5048 0.8796 35 1 4.4346 7.5284 -0.8997 36 1 2.8667 9.0410 3.7756 37 1 3.0936 9.0279 -2.1177 38 1 1.4774 9.6013 -1.4395 39 1 2.6829 10.7106 0.4970 40 1 4.2996 10.1375 -0.1806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882296132.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:44 Heat of formation + Delta-G solvation = 14.923514 kcal Electronic energy + Delta-G solvation = -21171.298898 eV Core-core repulsion = 17986.620440 eV Total energy + Delta-G solvation = -3184.678458 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.98593 -39.75617 -38.72788 -35.90468 -34.96098 -34.02897 -33.80593 -31.38773 -27.93734 -27.62675 -27.07409 -24.74974 -23.68322 -22.89256 -22.44667 -21.19654 -19.56077 -19.04974 -17.87809 -17.54515 -16.98915 -16.67730 -16.20310 -16.07564 -16.05385 -15.53027 -15.07805 -14.71851 -14.62491 -14.45282 -13.93883 -13.60988 -13.47312 -13.01892 -12.96510 -12.89759 -12.67484 -12.37690 -12.07414 -12.03144 -11.71533 -11.70547 -11.57659 -11.43901 -10.86219 -10.52822 -10.45274 -10.17425 -9.95117 -8.82998 -8.12473 -6.24549 0.36565 0.39275 1.37517 1.40899 1.48594 1.82061 2.17182 2.39806 3.01526 3.15618 3.35607 3.47557 3.90403 3.93242 3.94013 4.11232 4.28664 4.34339 4.52391 4.52651 4.53036 4.56091 4.65673 4.70653 4.78709 4.81384 5.01201 5.06679 5.07847 5.15346 5.25990 5.29013 5.37429 5.53458 5.64139 5.74844 5.92280 6.11640 6.29442 6.42563 6.71089 6.82627 7.44583 7.50355 8.94533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.005077 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.453335 B = 5513.787432 C = 6660.626054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.065 3.935 4 O -0.304 6.304 5 C 0.382 3.618 6 C -0.313 4.313 7 C 0.212 3.788 8 N -0.613 5.613 9 C 0.582 3.418 10 N -0.667 5.667 11 C 0.202 3.798 12 C 0.000 4.000 13 C -0.506 4.506 14 H 0.056 0.944 15 C 0.035 3.965 16 N -0.899 5.899 17 Si 0.942 3.058 18 H -0.283 1.283 19 H -0.286 1.286 20 H -0.266 1.266 21 C -0.184 4.184 22 C -0.154 4.154 23 N -0.648 5.648 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.175 0.825 32 H 0.211 0.789 33 H 0.412 0.588 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -14.835 -6.180 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.010 4.010 4 O -0.209 6.209 5 C 0.194 3.806 6 C -0.340 4.340 7 C 0.048 3.952 8 N -0.341 5.341 9 C 0.225 3.775 10 N -0.300 5.300 11 C 0.078 3.922 12 C -0.001 4.001 13 C -0.544 4.544 14 H 0.074 0.926 15 C -0.167 4.167 16 N -0.536 5.536 17 Si 0.768 3.232 18 H -0.210 1.210 19 H -0.212 1.212 20 H -0.190 1.190 21 C -0.221 4.221 22 C -0.192 4.192 23 N -0.390 5.390 24 H 0.100 0.900 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.193 0.807 32 H 0.228 0.772 33 H 0.250 0.750 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.688 -13.977 -6.024 15.313 hybrid contribution -0.882 -0.323 1.009 1.379 sum 0.806 -14.300 -5.015 15.176 Atomic orbital electron populations 1.21687 0.93130 1.03370 1.02290 1.21520 0.96986 0.92738 1.04011 1.22886 0.76428 0.99831 1.01870 1.86196 1.23865 1.23865 1.86956 1.20131 0.90237 0.83789 0.86491 1.21801 0.91557 1.01851 1.18799 1.23462 1.01427 0.85402 0.84945 1.68091 1.03945 1.35576 1.26493 1.19207 0.86107 0.85199 0.87009 1.44410 1.08590 1.01838 1.75120 1.20495 0.93501 0.80029 0.98189 1.19139 0.95794 0.89652 0.95493 1.20522 0.98655 1.42515 0.92682 0.92569 1.25579 0.97772 0.94140 0.99226 1.70078 1.25750 1.46192 1.11604 0.85810 0.81144 0.77419 0.78803 1.20956 1.21183 1.19013 1.23082 1.00380 1.06640 0.92009 1.22421 0.98022 0.97395 1.01357 1.67378 1.42141 0.98350 1.31087 0.89993 0.92760 0.92309 0.90091 0.90512 0.92239 0.92943 0.80710 0.77206 0.74953 0.94600 0.93489 0.93225 0.89163 0.90130 0.91914 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 71.98 0.71 -1.55 16 2 C -0.12 -2.08 6.30 30.59 0.19 -1.89 16 3 C 0.07 1.68 5.34 71.98 0.38 2.06 16 4 O -0.30 -8.84 10.13 -88.17 -0.89 -9.73 16 5 C 0.38 12.57 7.53 84.85 0.64 13.21 16 6 C -0.31 -8.42 10.12 22.55 0.23 -8.20 16 7 C 0.21 5.92 11.29 84.59 0.95 6.87 16 8 N -0.61 -23.09 9.58 -198.22 -1.90 -24.99 16 9 C 0.58 24.02 8.43 261.51 2.20 26.22 16 10 N -0.67 -29.25 5.47 -351.07 -1.92 -31.17 16 11 C 0.20 9.18 5.72 86.38 0.49 9.67 16 12 C 0.00 0.00 1.70 -52.93 -0.09 -0.09 16 13 C -0.51 -26.20 7.44 25.60 0.19 -26.01 16 14 H 0.06 2.89 7.82 -2.91 -0.02 2.86 16 15 C 0.03 1.84 5.39 84.66 0.46 2.30 16 16 N -0.90 -50.56 12.97 21.45 0.28 -50.28 16 17 Si 0.94 42.91 29.55 68.60 2.03 44.94 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C -0.18 -7.48 9.88 30.59 0.30 -7.18 16 22 C -0.15 -6.93 9.51 30.59 0.29 -6.64 16 23 N -0.65 -24.99 9.40 -310.87 -2.92 -27.91 16 24 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 30 H 0.05 1.51 8.12 -2.38 -0.02 1.49 16 31 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 32 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.41 18.49 7.58 -92.71 -0.70 17.79 16 34 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.05 2.00 7.95 -2.38 -0.02 1.98 16 36 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 37 H 0.09 3.24 8.08 -2.38 -0.02 3.22 16 38 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 40 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -61.91 342.36 1.95 -59.95 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.33 Total: 30.41 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.96 Total: 8.78 kcal Atomic # 7 Polarization: -127.89 SS G_CDS: -6.46 Total: -134.35 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.89 Total: -9.73 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -61.91 1.95 -59.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882296132.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.876 kcal (2) G-P(sol) polarization free energy of solvation -61.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds