Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46970 * 2 1 4 4 C 1.52997 * 109.47404 * 240.00049 * 2 1 3 5 5 C 1.50701 * 109.47212 * 174.99684 * 4 2 1 6 6 C 1.38674 * 120.41757 * 90.00021 * 5 4 2 7 7 C 1.38621 * 118.42130 * 179.97438 * 6 5 4 8 8 C 1.38227 * 119.16178 * 0.02562 * 7 6 5 9 9 N 1.31855 * 120.76380 * 359.97438 * 8 7 6 10 10 C 1.31884 * 121.72115 * 359.70717 * 9 8 7 11 11 N 1.46504 * 109.47145 * 119.99584 * 2 1 3 12 12 C 1.34776 * 120.00219 * 275.00364 * 11 2 1 13 13 O 1.21583 * 120.00057 * 359.97438 * 12 11 2 14 14 N 1.34781 * 119.99891 * 180.02562 * 12 11 2 15 15 C 1.46493 * 119.99865 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.46962 * 179.97438 * 15 14 12 17 17 C 1.50705 * 109.47043 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00102 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99983 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99721 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99890 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46854 * 60.00381 * 21 19 17 23 23 H 1.48496 * 109.46993 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47225 * 300.00274 * 21 19 17 25 25 H 1.09000 * 109.47476 * 60.00038 * 1 2 3 26 26 H 1.09008 * 109.46970 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47654 * 299.99762 * 1 2 3 28 28 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 29 29 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 30 30 H 1.08004 * 120.78805 * 359.97438 * 6 5 4 31 31 H 1.08009 * 120.42155 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.61799 * 179.97438 * 8 7 6 33 33 H 1.08007 * 119.61602 * 180.31062 * 10 9 8 34 34 H 0.97006 * 119.99491 * 95.00433 * 11 2 1 35 35 H 0.97001 * 120.00009 * 359.97438 * 14 12 11 36 36 H 1.09001 * 109.47322 * 299.99611 * 15 14 12 37 37 H 1.09007 * 109.47484 * 59.99542 * 15 14 12 38 38 H 1.08996 * 109.46997 * 299.99369 * 16 15 14 39 39 H 1.08997 * 109.47159 * 60.00232 * 16 15 14 40 40 H 0.97008 * 119.99350 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 6 4.3400 -1.5795 -0.7165 7 6 5.7167 -1.4410 -0.8006 8 6 6.2445 -0.3533 -1.4706 9 7 5.4549 0.5450 -2.0258 10 6 4.1412 0.4420 -1.9709 11 7 2.0183 -0.6905 1.1962 12 6 2.1470 -0.0182 2.3572 13 8 1.8582 1.1616 2.4117 14 7 2.5967 -0.6534 3.4576 15 6 2.7371 0.0776 4.7193 16 6 3.2614 -0.8687 5.8013 17 6 3.4052 -0.1169 7.0994 18 1 3.1488 0.9311 7.1478 19 6 3.8652 -0.7667 8.2251 20 7 4.1789 -2.0425 8.1658 21 14 4.0442 0.1654 9.8341 22 1 2.7219 0.7021 10.2449 23 1 4.5541 -0.7527 10.8839 24 1 4.9993 1.2879 9.6523 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6054 -0.2617 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 3.8993 -2.4189 -0.1990 31 1 6.3687 -2.1737 -0.3482 32 1 7.3161 -0.2379 -1.5403 33 1 3.5267 1.1950 -2.4420 34 1 2.2490 -1.6317 1.1527 35 1 2.8275 -1.5946 3.4140 36 1 3.4382 0.9015 4.5859 37 1 1.7666 0.4717 5.0209 38 1 2.5600 -1.6922 5.9346 39 1 4.2318 -1.2630 5.4999 40 1 4.5022 -2.4997 8.9579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894131298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = -16.434799 kcal Electronic energy + Delta-G solvation = -20830.227136 eV Core-core repulsion = 17644.188879 eV Total energy + Delta-G solvation = -3186.038257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.50781 -39.54927 -36.57426 -34.69012 -33.07832 -32.77324 -32.10437 -30.75973 -29.06222 -27.00287 -24.75138 -23.76838 -22.78941 -21.53232 -20.78834 -20.44392 -18.06268 -17.28792 -16.70839 -16.32512 -15.94369 -15.57983 -15.02823 -14.54772 -14.34381 -14.15009 -14.04831 -13.57066 -13.34109 -13.25157 -12.98331 -12.69171 -12.38093 -12.29267 -12.12461 -11.51187 -11.19594 -11.17575 -11.00276 -10.64341 -10.30272 -9.94856 -9.91119 -9.62180 -9.54315 -9.26848 -9.18273 -8.96119 -8.47626 -8.23817 -6.08784 -4.11310 0.92470 1.11175 3.04702 3.31979 3.35539 3.39528 3.61775 3.62584 4.23448 4.39562 4.47609 4.56448 4.63543 4.72402 4.82226 4.83393 5.10732 5.14990 5.28386 5.32084 5.45538 5.51248 5.58574 5.62715 5.85998 5.94248 6.06552 6.15872 6.31644 6.40979 6.51974 6.66821 6.78967 7.02130 7.25041 7.57320 7.63834 7.80232 7.90408 8.26810 8.45584 8.93502 9.03006 9.53380 11.02867 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020220 B = 0.003484 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.469388 B = 8035.909709 C = 8848.157902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.089 0.911 4 C -0.084 4.084 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.168 4.168 8 C 0.092 3.908 9 N -0.484 5.484 10 C 0.100 3.900 11 N -0.747 5.747 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.739 5.739 15 C 0.141 3.859 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.897 3.103 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.131 0.869 31 H 0.135 0.865 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.390 0.610 35 H 0.392 0.608 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 -2.614 -21.870 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.107 0.893 4 C -0.123 4.123 5 C -0.132 4.132 6 C -0.095 4.095 7 C -0.187 4.187 8 C -0.065 4.065 9 N -0.192 5.192 10 C -0.057 4.057 11 N -0.404 5.404 12 C 0.399 3.601 13 O -0.476 6.476 14 N -0.393 5.393 15 C 0.018 3.982 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.223 0.777 35 H 0.224 0.776 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.062 -0.921 -22.108 22.223 hybrid contribution 0.049 -1.297 1.453 1.948 sum -2.012 -2.218 -20.655 20.871 Atomic orbital electron populations 1.22211 0.95211 1.02066 1.02748 1.20697 0.93583 0.97304 0.82368 0.89340 1.20904 0.90494 1.02260 0.98632 1.20814 0.96809 0.96381 0.99166 1.21453 0.93608 0.98148 0.96264 1.22171 0.95974 0.99972 1.00625 1.22759 1.00079 0.90084 0.93601 1.67673 1.05553 1.27665 1.18301 1.22657 0.90921 0.96015 0.96071 1.45216 1.72825 1.13248 1.09122 1.16062 0.78492 0.85179 0.80340 1.90882 1.57558 1.14486 1.84674 1.45528 1.69873 1.13839 1.10023 1.21573 1.00326 0.95564 0.80759 1.19312 0.96503 0.94603 0.91945 1.21023 1.44347 0.96623 0.94009 0.92285 1.24988 0.95169 0.94917 0.99163 1.69947 1.44557 1.09200 1.29695 0.86572 0.78628 0.79605 0.82735 1.20091 1.21251 1.20098 0.91807 0.92558 0.91554 0.88979 0.90138 0.85132 0.84699 0.82894 0.82961 0.77673 0.77559 0.92899 0.92836 0.96016 0.96049 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.48 37.15 0.35 -1.21 16 2 C 0.17 1.72 2.56 -67.93 -0.17 1.55 16 3 H 0.09 1.15 7.58 -51.92 -0.39 0.75 16 4 C -0.08 -0.60 4.92 -27.88 -0.14 -0.74 16 5 C -0.13 -1.20 4.96 -104.48 -0.52 -1.72 16 6 C -0.07 -0.62 9.27 -39.28 -0.36 -0.99 16 7 C -0.17 -1.57 10.11 -39.44 -0.40 -1.97 16 8 C 0.09 0.96 11.18 -17.55 -0.20 0.76 16 9 N -0.48 -5.86 10.36 -13.25 -0.14 -5.99 16 10 C 0.10 1.05 10.86 -17.55 -0.19 0.86 16 11 N -0.75 -9.04 4.54 -58.68 -0.27 -9.31 16 12 C 0.70 12.16 8.53 -86.92 -0.74 11.42 16 13 O -0.60 -12.88 16.01 5.29 0.08 -12.80 16 14 N -0.74 -13.12 5.56 -65.23 -0.36 -13.48 16 15 C 0.14 3.07 5.61 -4.04 -0.02 3.04 16 16 C 0.01 0.35 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 29 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.13 0.90 7.64 -52.48 -0.40 0.50 16 31 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.39 3.66 7.91 -40.82 -0.32 3.33 16 35 H 0.39 5.93 8.49 -40.82 -0.35 5.59 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 342.79 15.07 5.17 5.17 Total: -1.00 -34.24 342.79 -8.82 -43.06 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.07 Total: 4.43 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.94 Total: -2.10 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.03 Total: -54.22 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.24 -8.82 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.627 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds