Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.52994 * 109.47079 * 120.00221 * 2 1 3 5 5 C 1.50702 * 109.47098 * 184.99775 * 4 2 1 6 6 C 1.38677 * 120.41881 * 89.99960 * 5 4 2 7 7 C 1.38628 * 118.41857 * 179.97438 * 6 5 4 8 8 C 1.38215 * 119.16579 * 0.02562 * 7 6 5 9 9 N 1.31854 * 120.76332 * 359.97438 * 8 7 6 10 10 C 1.31888 * 121.72838 * 0.02562 * 9 8 7 11 11 N 1.46503 * 109.47000 * 239.99982 * 2 1 3 12 12 C 1.34777 * 119.99955 * 85.00523 * 11 2 1 13 13 O 1.21586 * 119.99859 * 359.97438 * 12 11 2 14 14 N 1.34778 * 120.00013 * 180.02562 * 12 11 2 15 15 C 1.46505 * 119.99908 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47055 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47239 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99789 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99336 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00280 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46801 * 90.00295 * 21 19 17 23 23 H 1.48501 * 109.46900 * 210.00066 * 21 19 17 24 24 H 1.48497 * 109.46823 * 330.00283 * 21 19 17 25 25 H 1.08996 * 109.47115 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.46901 * 59.99690 * 1 2 3 27 27 H 1.08996 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47138 * 65.00338 * 4 2 1 29 29 H 1.08994 * 109.47210 * 304.99642 * 4 2 1 30 30 H 1.08003 * 120.78603 * 0.02562 * 6 5 4 31 31 H 1.08005 * 120.41354 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.62265 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.61890 * 179.97438 * 10 9 8 34 34 H 0.97000 * 120.00209 * 264.99690 * 11 2 1 35 35 H 0.96994 * 119.99880 * 359.97438 * 14 12 11 36 36 H 1.08996 * 109.47164 * 300.00039 * 15 14 12 37 37 H 1.09000 * 109.46607 * 59.99924 * 15 14 12 38 38 H 1.09009 * 109.47312 * 300.00438 * 16 15 14 39 39 H 1.09003 * 109.47143 * 60.00047 * 16 15 14 40 40 H 0.97009 * 119.99056 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1434 0.4489 1.9680 7 6 5.5282 0.5053 2.0014 8 6 6.2581 -0.4932 1.3845 9 7 5.6521 -1.4903 0.7704 10 6 4.3371 -1.5764 0.7185 11 7 2.0183 -0.6906 -1.1962 12 6 2.1471 -0.0182 -2.3571 13 8 1.8576 1.1614 -2.4118 14 7 2.5959 -0.6537 -3.4577 15 6 2.7353 0.0771 -4.7198 16 6 3.2598 -0.8691 -5.8017 17 6 3.4038 -0.1173 -7.0998 18 1 3.1466 0.9305 -7.1484 19 6 3.8630 -0.7674 -8.2257 20 7 3.9882 -0.1113 -9.3586 21 14 4.3072 -2.5799 -8.1418 22 1 3.1098 -3.3982 -8.4608 23 1 5.3823 -2.8720 -9.1238 24 1 4.7826 -2.9102 -6.7743 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -1.7716 1.2054 29 1 1.6054 -0.2618 2.1369 30 1 3.5472 1.2148 2.4417 31 1 6.0303 1.3197 2.5026 32 1 7.3372 -0.4568 1.4065 33 1 3.8764 -2.4078 0.2059 34 1 2.2490 -1.6318 -1.1527 35 1 2.8264 -1.5948 -3.4142 36 1 1.7646 0.4711 -5.0207 37 1 3.4366 0.9009 -4.5870 38 1 4.2306 -1.2629 -5.5006 39 1 2.5588 -1.6932 -5.9346 40 1 4.3116 -0.5687 -10.1506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894131299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -11.771836 kcal Electronic energy + Delta-G solvation = -20895.361454 eV Core-core repulsion = 17709.525399 eV Total energy + Delta-G solvation = -3185.836056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56460 -39.61063 -36.63513 -34.78675 -33.21731 -32.73699 -32.00305 -30.95519 -29.49448 -27.04926 -24.85640 -23.82715 -22.80755 -21.44365 -20.69817 -20.49163 -18.10268 -17.34067 -16.90529 -16.61025 -16.03526 -15.64798 -15.13026 -14.49266 -14.27233 -14.16981 -14.00332 -13.70211 -13.50137 -13.30151 -13.05785 -12.72614 -12.57706 -12.47577 -12.19307 -11.55151 -11.44478 -11.28414 -11.13599 -10.35509 -10.22660 -10.02965 -9.94403 -9.72468 -9.64846 -9.29372 -9.20025 -9.04076 -8.59854 -8.35496 -6.08307 -4.08049 0.87164 1.05666 2.98147 3.27628 3.35401 3.37156 3.55872 3.57726 4.18616 4.39479 4.40574 4.48752 4.59659 4.66970 4.72435 4.80483 5.01376 5.13593 5.24825 5.24855 5.41121 5.44595 5.52216 5.58889 5.83151 5.86483 5.99532 6.11813 6.13286 6.28360 6.46333 6.59437 6.64487 6.86064 7.07634 7.28303 7.33297 7.70722 7.76662 8.33412 8.49085 8.94475 8.97371 9.52070 11.04803 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.003803 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.329197 B = 7360.155619 C = 8185.823569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 H 0.088 0.912 4 C -0.085 4.085 5 C -0.131 4.131 6 C -0.073 4.073 7 C -0.170 4.170 8 C 0.093 3.907 9 N -0.481 5.481 10 C 0.105 3.895 11 N -0.748 5.748 12 C 0.701 3.299 13 O -0.595 6.595 14 N -0.742 5.742 15 C 0.149 3.851 16 C -0.021 4.021 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.882 3.118 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.390 0.610 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.021 0.979 39 H 0.017 0.983 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 -3.968 26.805 27.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.061 3.939 3 H 0.106 0.894 4 C -0.123 4.123 5 C -0.133 4.133 6 C -0.099 4.099 7 C -0.190 4.190 8 C -0.064 4.064 9 N -0.189 5.189 10 C -0.052 4.052 11 N -0.404 5.404 12 C 0.401 3.599 13 O -0.473 6.473 14 N -0.396 5.396 15 C 0.026 3.974 16 C -0.059 4.059 17 C -0.560 4.560 18 H 0.094 0.906 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.167 0.833 34 H 0.224 0.776 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.853 -3.505 26.121 26.420 hybrid contribution 0.031 -1.124 0.264 1.155 sum -1.821 -4.629 26.385 26.850 Atomic orbital electron populations 1.22212 0.95155 1.02119 1.02763 1.20694 0.93616 0.97255 0.82334 0.89387 1.20908 0.90459 1.02350 0.98601 1.20827 0.96973 0.96288 0.99169 1.21494 0.94879 0.96866 0.96650 1.22148 0.94815 1.00530 1.01509 1.22770 1.00599 0.89869 0.93178 1.67681 1.11404 1.24065 1.15738 1.22600 0.89158 0.97643 0.95777 1.45221 1.72785 1.13293 1.09128 1.16020 0.78447 0.85166 0.80294 1.90894 1.57382 1.14439 1.84635 1.45521 1.70161 1.13798 1.10095 1.21353 1.00851 0.95089 0.80063 1.19794 0.96105 0.95585 0.94444 1.20922 1.44646 0.98522 0.91902 0.90616 1.24997 0.94869 0.98195 0.95212 1.69912 1.46585 1.36664 1.00594 0.86750 0.78461 0.85670 0.78198 1.20244 1.21282 1.19067 0.91844 0.91504 0.92497 0.89980 0.89091 0.84862 0.84813 0.82865 0.83315 0.77606 0.77648 0.92215 0.92288 0.96045 0.96487 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.17 1.64 2.56 -67.93 -0.17 1.47 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.08 -0.57 4.92 -27.88 -0.14 -0.71 16 5 C -0.13 -1.15 4.96 -104.48 -0.52 -1.67 16 6 C -0.07 -0.62 9.86 -39.28 -0.39 -1.01 16 7 C -0.17 -1.46 10.11 -39.45 -0.40 -1.86 16 8 C 0.09 0.93 11.18 -17.55 -0.20 0.74 16 9 N -0.48 -5.77 10.36 -13.26 -0.14 -5.90 16 10 C 0.11 1.07 10.29 -17.55 -0.18 0.89 16 11 N -0.75 -8.72 4.54 -58.68 -0.27 -8.99 16 12 C 0.70 11.84 8.53 -86.92 -0.74 11.10 16 13 O -0.60 -12.54 16.01 5.29 0.08 -12.46 16 14 N -0.74 -12.69 5.56 -65.22 -0.36 -13.05 16 15 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 16 C -0.02 -0.50 4.16 -27.88 -0.12 -0.62 16 17 C -0.52 -14.86 9.66 -34.44 -0.33 -15.19 16 18 H 0.08 2.34 7.99 -52.49 -0.42 1.92 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 20 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 29 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.15 1.21 7.59 -52.49 -0.40 0.81 16 34 H 0.39 3.51 7.87 -40.82 -0.32 3.19 16 35 H 0.39 5.58 8.49 -40.82 -0.35 5.24 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.50 7.20 -51.92 -0.37 0.12 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -35.37 339.11 -8.45 -43.82 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.04 Total: 4.64 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.95 Total: -2.96 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.01 Total: -54.85 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.37 -8.45 -43.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.047 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds