Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.52994 * 109.47079 * 120.00221 * 2 1 3 5 5 C 1.50702 * 109.47098 * 184.99775 * 4 2 1 6 6 C 1.38677 * 120.41881 * 89.99960 * 5 4 2 7 7 C 1.38628 * 118.41857 * 179.97438 * 6 5 4 8 8 C 1.38215 * 119.16579 * 0.02562 * 7 6 5 9 9 N 1.31854 * 120.76332 * 359.97438 * 8 7 6 10 10 C 1.31888 * 121.72838 * 0.02562 * 9 8 7 11 11 N 1.46503 * 109.47000 * 239.99982 * 2 1 3 12 12 C 1.34777 * 119.99955 * 85.00523 * 11 2 1 13 13 O 1.21586 * 119.99859 * 359.97438 * 12 11 2 14 14 N 1.34778 * 120.00013 * 180.02562 * 12 11 2 15 15 C 1.46505 * 119.99908 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47055 * 179.97438 * 15 14 12 17 17 C 1.50701 * 109.47239 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99890 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99789 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99336 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00280 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.46801 * 90.00295 * 21 19 17 23 23 H 1.48501 * 109.46900 * 210.00066 * 21 19 17 24 24 H 1.48497 * 109.46823 * 330.00283 * 21 19 17 25 25 H 1.08996 * 109.47115 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.46901 * 59.99690 * 1 2 3 27 27 H 1.08996 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47138 * 65.00338 * 4 2 1 29 29 H 1.08994 * 109.47210 * 304.99642 * 4 2 1 30 30 H 1.08003 * 120.78603 * 0.02562 * 6 5 4 31 31 H 1.08005 * 120.41354 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.62265 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.61890 * 179.97438 * 10 9 8 34 34 H 0.97000 * 120.00209 * 264.99690 * 11 2 1 35 35 H 0.96994 * 119.99880 * 359.97438 * 14 12 11 36 36 H 1.08996 * 109.47164 * 300.00039 * 15 14 12 37 37 H 1.09000 * 109.46607 * 59.99924 * 15 14 12 38 38 H 1.09009 * 109.47312 * 300.00438 * 16 15 14 39 39 H 1.09003 * 109.47143 * 60.00047 * 16 15 14 40 40 H 0.97009 * 119.99056 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1434 0.4489 1.9680 7 6 5.5282 0.5053 2.0014 8 6 6.2581 -0.4932 1.3845 9 7 5.6521 -1.4903 0.7704 10 6 4.3371 -1.5764 0.7185 11 7 2.0183 -0.6906 -1.1962 12 6 2.1471 -0.0182 -2.3571 13 8 1.8576 1.1614 -2.4118 14 7 2.5959 -0.6537 -3.4577 15 6 2.7353 0.0771 -4.7198 16 6 3.2598 -0.8691 -5.8017 17 6 3.4038 -0.1173 -7.0998 18 1 3.1466 0.9305 -7.1484 19 6 3.8630 -0.7674 -8.2257 20 7 3.9882 -0.1113 -9.3586 21 14 4.3072 -2.5799 -8.1418 22 1 3.1098 -3.3982 -8.4608 23 1 5.3823 -2.8720 -9.1238 24 1 4.7826 -2.9102 -6.7743 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -1.7716 1.2054 29 1 1.6054 -0.2618 2.1369 30 1 3.5472 1.2148 2.4417 31 1 6.0303 1.3197 2.5026 32 1 7.3372 -0.4568 1.4065 33 1 3.8764 -2.4078 0.2059 34 1 2.2490 -1.6318 -1.1527 35 1 2.8264 -1.5948 -3.4142 36 1 1.7646 0.4711 -5.0207 37 1 3.4366 0.9009 -4.5870 38 1 4.2306 -1.2629 -5.5006 39 1 2.5588 -1.6932 -5.9346 40 1 4.3116 -0.5687 -10.1506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894131299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = -37.669389 kcal Electronic energy + Delta-G solvation = -20896.484457 eV Core-core repulsion = 17709.525399 eV Total energy + Delta-G solvation = -3186.959058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38483 -40.76228 -37.65597 -36.41750 -34.81976 -33.99826 -32.82263 -32.18870 -30.94158 -27.69271 -26.73472 -24.50320 -23.67214 -22.74806 -22.23055 -21.58089 -19.46504 -18.91353 -17.98493 -17.51459 -17.03470 -16.65267 -16.34192 -16.18101 -15.65792 -15.38749 -15.10244 -14.82644 -14.70507 -14.56412 -13.94550 -13.86450 -13.56379 -13.35235 -13.15279 -13.03021 -12.84635 -12.23255 -12.17531 -12.16268 -11.97127 -11.76745 -11.53769 -11.23453 -10.78918 -10.71588 -10.38049 -10.29975 -9.85953 -9.70811 -8.30362 -6.37549 0.19917 0.39137 1.38591 1.41612 1.52857 1.78643 2.20877 2.36701 2.88257 3.04691 3.37131 3.56525 3.79231 3.96526 3.98192 4.12233 4.16050 4.34674 4.35328 4.42390 4.44845 4.63144 4.74170 4.75966 4.84988 4.91141 4.96552 5.09207 5.18201 5.22580 5.33291 5.38353 5.40831 5.45328 5.65086 5.68328 5.83180 6.06562 6.23095 6.69552 7.07205 7.16931 7.26987 7.64625 8.86559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018683 B = 0.003803 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.329197 B = 7360.155619 C = 8185.823569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.060 0.940 4 C -0.071 4.071 5 C -0.135 4.135 6 C -0.083 4.083 7 C -0.174 4.174 8 C 0.071 3.929 9 N -0.516 5.516 10 C 0.087 3.913 11 N -0.726 5.726 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.734 5.734 15 C 0.166 3.834 16 C -0.010 4.010 17 C -0.540 4.540 18 H 0.028 0.972 19 C 0.005 3.995 20 N -0.950 5.950 21 Si 0.959 3.041 22 H -0.263 1.263 23 H -0.286 1.286 24 H -0.239 1.239 25 H 0.087 0.913 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.041 0.959 37 H 0.036 0.964 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.542 -6.567 29.406 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.079 0.921 4 C -0.110 4.110 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.193 4.193 8 C -0.085 4.085 9 N -0.225 5.225 10 C -0.070 4.070 11 N -0.383 5.383 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.390 5.390 15 C 0.042 3.958 16 C -0.048 4.048 17 C -0.578 4.578 18 H 0.047 0.953 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.212 1.212 24 H -0.163 1.163 25 H 0.106 0.894 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.244 0.756 35 H 0.244 0.756 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.240 -6.152 28.792 29.527 hybrid contribution 0.132 -0.181 -0.505 0.552 sum -2.109 -6.333 28.287 29.064 Atomic orbital electron populations 1.22159 0.94215 1.03122 1.02182 1.20855 0.94281 0.96240 0.82672 0.92147 1.20894 0.88918 1.03613 0.97530 1.21062 0.98024 0.95945 0.98676 1.21911 0.95222 0.97286 0.96456 1.22452 0.95198 1.00664 1.01028 1.23121 1.01591 0.90191 0.93598 1.67650 1.12581 1.25273 1.17019 1.22962 0.88973 0.98699 0.96374 1.45096 1.71280 1.13968 1.07907 1.16195 0.78080 0.84704 0.81270 1.90868 1.59257 1.16728 1.85483 1.45139 1.70497 1.14398 1.08920 1.20825 0.99075 0.94404 0.81540 1.19630 0.97183 0.95653 0.92358 1.21249 1.44688 0.97127 0.94749 0.95338 1.26070 0.94507 1.04222 0.94397 1.70082 1.47923 1.39320 1.01711 0.85535 0.78566 0.78238 0.79517 1.18763 1.21183 1.16261 0.89400 0.95146 0.90637 0.87593 0.86454 0.82643 0.82554 0.81640 0.81811 0.75578 0.75577 0.94061 0.94596 0.94806 0.94517 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 71.98 0.68 -1.82 16 2 C 0.16 2.88 2.56 44.99 0.12 2.99 16 3 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 4 C -0.07 -0.70 4.92 29.85 0.15 -0.55 16 5 C -0.14 -2.05 4.96 -19.77 -0.10 -2.15 16 6 C -0.08 -1.23 9.86 22.47 0.22 -1.01 16 7 C -0.17 -2.71 10.11 22.36 0.23 -2.49 16 8 C 0.07 1.37 11.18 84.68 0.95 2.32 16 9 N -0.52 -11.91 10.36 -195.85 -2.03 -13.94 16 10 C 0.09 1.60 10.29 84.67 0.87 2.48 16 11 N -0.73 -15.49 4.54 -457.82 -2.08 -17.57 16 12 C 0.70 23.14 8.53 179.05 1.53 24.66 16 13 O -0.64 -27.58 16.01 -3.99 -0.06 -27.65 16 14 N -0.73 -24.30 5.56 -478.53 -2.66 -26.96 16 15 C 0.17 7.14 5.61 86.38 0.48 7.62 16 16 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 17 C -0.54 -31.52 9.66 25.60 0.25 -31.28 16 18 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 19 C 0.01 0.30 5.47 84.65 0.46 0.76 16 20 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 21 Si 0.96 43.07 27.47 68.60 1.88 44.95 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.11 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.12 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 31 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.16 2.25 7.59 -2.91 -0.02 2.22 16 34 H 0.41 6.05 7.87 -92.71 -0.73 5.32 16 35 H 0.41 10.59 8.49 -92.71 -0.79 9.80 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.03 1.48 7.20 -2.38 -0.02 1.46 16 39 H 0.04 1.56 7.57 -2.39 -0.02 1.54 16 40 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -80.75 339.11 0.78 -79.97 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.53 Total: 19.73 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.96 Total: 1.20 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -6.47 Total: -118.20 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.06 Total: -27.65 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -80.75 0.78 -79.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894131299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.299 kcal (2) G-P(sol) polarization free energy of solvation -80.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds