Wall clock time and date at job start Mon Mar 30 2020 02:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21573 * 120.00203 * 0.02562 * 13 12 2 15 15 C 1.47715 * 119.99883 * 180.02562 * 13 12 2 16 16 N 1.32208 * 126.67528 * 359.68404 * 15 13 12 17 17 N 1.28848 * 110.14530 * 179.84454 * 16 15 13 18 18 H 0.97006 * 124.97261 * 180.02562 * 17 16 15 19 19 C 1.34306 * 110.04394 * 0.36672 * 17 16 15 20 20 C 1.35585 * 107.21712 * 359.84974 * 19 17 16 21 21 C 1.50380 * 124.61773 * 179.78654 * 20 19 17 22 22 C 1.53471 * 108.28677 * 343.75658 * 21 20 19 23 23 H 1.08999 * 109.46422 * 289.47161 * 22 21 20 24 24 C 1.53007 * 109.45607 * 169.49264 * 22 21 20 25 25 C 1.53099 * 109.51438 * 49.48505 * 22 21 20 26 26 C 1.50716 * 128.90560 * 179.88790 * 19 17 16 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 31 31 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 32 32 H 1.09000 * 109.69733 * 103.45707 * 21 20 19 33 33 H 1.09003 * 109.70116 * 224.05609 * 21 20 19 34 34 H 1.09001 * 109.46730 * 299.96101 * 24 22 21 35 35 H 1.09001 * 109.46787 * 59.96236 * 24 22 21 36 36 H 1.08998 * 109.47226 * 179.97438 * 24 22 21 37 37 H 1.08997 * 109.44275 * 169.89381 * 25 22 21 38 38 H 1.09002 * 109.41223 * 49.98161 * 25 22 21 39 39 H 1.09000 * 109.69054 * 283.02714 * 26 19 17 40 40 H 1.09000 * 109.68886 * 43.56551 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8574 1.1614 2.4118 15 6 2.6399 -0.7142 3.5631 16 7 2.9852 -1.9871 3.6544 17 7 3.3722 -2.2571 4.8534 18 1 3.6731 -3.1276 5.1578 19 6 3.2908 -1.1584 5.6217 20 6 2.8270 -0.1540 4.8379 21 6 2.5831 1.2534 5.3079 22 6 2.5472 1.2493 6.8422 23 1 1.6389 0.7523 7.1829 24 6 2.5634 2.6903 7.3563 25 6 3.7702 0.5019 7.3804 26 6 3.6321 -0.9963 7.0807 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7088 1.1611 -3.4845 31 1 2.2490 -1.6316 1.1527 32 1 3.3880 1.9013 4.9609 33 1 1.6296 1.6107 4.9190 34 1 3.4719 3.1872 7.0159 35 1 1.6927 3.2225 6.9732 36 1 2.5375 2.6877 8.4460 37 1 3.8416 0.6513 8.4577 38 1 4.6700 0.8865 6.9003 39 1 2.8373 -1.4217 7.6933 40 1 4.5729 -1.5028 7.2962 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895980083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:30 Heat of formation + Delta-G solvation = 9.925182 kcal Electronic energy + Delta-G solvation = -21516.817811 eV Core-core repulsion = 18331.922608 eV Total energy + Delta-G solvation = -3184.895202 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.67063 -38.44311 -37.58192 -34.70418 -32.70054 -32.20008 -31.51457 -29.78383 -28.53121 -26.44671 -25.18922 -23.76884 -23.45342 -21.33491 -20.48470 -19.28975 -18.91060 -17.65806 -17.01170 -15.82246 -15.57932 -15.12457 -14.74824 -14.41792 -14.16283 -13.78209 -13.57896 -13.33543 -13.16955 -12.76452 -12.47060 -12.30537 -12.13520 -11.75345 -11.61315 -11.03311 -11.00417 -10.92873 -10.75229 -10.70222 -10.58718 -10.37383 -10.25396 -10.16302 -9.14243 -9.10383 -8.96722 -8.51000 -8.47577 -7.79909 -6.05987 -4.14366 1.89528 2.31017 2.93605 3.29560 3.35668 3.38487 4.10679 4.12813 4.39914 4.51256 4.58899 4.65968 4.88686 5.02514 5.15181 5.24704 5.26401 5.39064 5.47327 5.61045 5.73443 5.74567 5.76728 5.90339 5.94701 6.11554 6.15408 6.38724 6.42060 6.68130 6.90999 7.05541 7.10589 7.22593 7.52845 7.64708 7.76868 7.96081 8.07625 8.21589 8.78069 8.86137 9.20401 9.52784 11.00176 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030782 B = 0.003946 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.401483 B = 7093.709457 C = 7703.767492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.693 5.693 13 C 0.585 3.415 14 O -0.545 6.545 15 C 0.009 3.991 16 N -0.266 5.266 17 N -0.381 5.381 18 H 0.441 0.559 19 C -0.001 4.001 20 C -0.145 4.145 21 C -0.036 4.036 22 C -0.094 4.094 23 H 0.071 0.929 24 C -0.146 4.146 25 C -0.109 4.109 26 C -0.044 4.044 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.395 0.605 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -3.671 21.011 21.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.068 0.932 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.340 5.340 13 C 0.368 3.632 14 O -0.421 6.421 15 C -0.152 4.152 16 N -0.101 5.101 17 N -0.093 5.093 18 H 0.284 0.716 19 C -0.128 4.128 20 C -0.156 4.156 21 C -0.074 4.074 22 C -0.112 4.112 23 H 0.089 0.911 24 C -0.203 4.203 25 C -0.147 4.147 26 C -0.083 4.083 27 H 0.109 0.891 28 H 0.045 0.955 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.228 0.772 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.833 -3.635 20.178 21.065 hybrid contribution 0.550 -0.913 -0.348 1.121 sum 5.382 -4.548 19.830 21.045 Atomic orbital electron populations 1.22075 0.98342 0.99174 1.00933 1.18795 0.91122 0.94040 0.79853 0.93162 1.21236 1.32273 1.13204 0.90292 0.92030 1.24879 0.94831 0.94992 0.98987 1.69908 1.35947 1.22544 1.23787 0.86445 0.78565 0.79889 0.82181 1.20582 1.19851 1.21099 1.46435 1.63789 1.13901 1.09918 1.16946 0.78617 0.85997 0.81671 1.90730 1.51936 1.14981 1.84499 1.22100 1.06467 0.90339 0.96298 1.73900 1.16961 1.17461 1.01770 1.42947 1.48639 1.11375 1.06341 0.71572 1.21097 1.07648 0.87960 0.96050 1.19897 1.06424 0.97311 0.91927 1.20021 1.03423 0.90910 0.93036 1.21271 0.98163 0.96176 0.95604 0.91084 1.21812 1.02316 0.95855 1.00351 1.21624 0.99128 0.93072 1.00875 1.20176 1.01663 0.98363 0.88099 0.89080 0.95464 0.96552 0.92633 0.77239 0.90636 0.89637 0.92518 0.92280 0.92881 0.91082 0.91307 0.90191 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.26 37.16 0.34 -3.46 16 2 C 0.26 7.05 2.56 -69.09 -0.18 6.87 16 3 H 0.05 1.52 7.58 -51.92 -0.39 1.13 16 4 C -0.53 -14.69 8.73 -34.44 -0.30 -14.99 16 5 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 N -0.69 -16.10 5.07 -55.92 -0.28 -16.38 16 13 C 0.59 13.19 7.79 -12.39 -0.10 13.09 16 14 O -0.54 -13.62 15.47 5.30 0.08 -13.54 16 15 C 0.01 0.16 7.12 -82.99 -0.59 -0.43 16 16 N -0.27 -4.35 11.96 33.28 0.40 -3.96 16 17 N -0.38 -4.59 6.82 33.42 0.23 -4.36 16 18 H 0.44 3.41 8.96 -190.21 -1.71 1.71 16 19 C 0.00 -0.01 7.12 -82.45 -0.59 -0.59 16 20 C -0.15 -2.28 5.99 -104.88 -0.63 -2.90 16 21 C -0.04 -0.50 4.84 -27.79 -0.13 -0.64 16 22 C -0.09 -0.94 2.70 -90.32 -0.24 -1.18 16 23 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 24 C -0.15 -1.27 9.16 37.16 0.34 -0.93 16 25 C -0.11 -0.89 5.19 -26.47 -0.14 -1.02 16 26 C -0.04 -0.35 6.31 -27.67 -0.17 -0.52 16 27 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.39 8.47 8.27 -40.82 -0.34 8.13 16 32 H 0.08 1.10 8.12 -51.93 -0.42 0.67 16 33 H 0.09 1.37 7.67 -51.93 -0.40 0.97 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -32.48 327.63 -8.85 -41.33 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.34 Total: 5.57 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.48 Total: -4.98 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.97 Total: -49.48 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.08 Total: -13.54 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.48 -8.85 -41.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895980083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.250 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds