Wall clock time and date at job start Mon Mar 30 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46431 * 2 1 4 4 C 1.53110 * 109.46896 * 119.99066 * 2 1 3 5 5 C 1.53396 * 109.64297 * 190.06459 * 4 2 1 6 6 C 1.50709 * 108.33767 * 309.99358 * 5 4 2 7 7 N 1.34316 * 128.90400 * 196.70780 * 6 5 4 8 8 H 0.96998 * 124.98028 * 359.76982 * 7 6 5 9 9 N 1.28839 * 110.04308 * 179.78648 * 7 6 5 10 10 C 1.32214 * 110.15234 * 0.05370 * 9 7 6 11 11 C 1.47711 * 126.68048 * 179.75837 * 10 9 7 12 12 O 1.21566 * 119.99834 * 180.02562 * 11 10 9 13 13 N 1.34772 * 119.99690 * 0.02757 * 11 10 9 14 14 C 1.46501 * 119.99710 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46817 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00324 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99670 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47156 * 59.99886 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46944 * 299.99661 * 20 18 16 24 24 C 1.35584 * 123.87859 * 16.59385 * 6 5 4 25 25 C 1.50368 * 124.62149 * 0.31003 * 24 6 5 26 26 H 1.09004 * 109.46893 * 300.00452 * 1 2 3 27 27 H 1.08990 * 109.47634 * 60.00961 * 1 2 3 28 28 H 1.09005 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.44200 * 70.01167 * 4 2 1 30 30 H 1.09003 * 109.40649 * 310.10032 * 4 2 1 31 31 H 1.09001 * 109.68778 * 190.27881 * 5 4 2 32 32 H 1.09008 * 109.72427 * 69.72648 * 5 4 2 33 33 H 0.97005 * 120.00207 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.46980 * 299.99752 * 14 13 11 35 35 H 1.09001 * 109.47059 * 59.99726 * 14 13 11 36 36 H 1.08996 * 109.47124 * 299.99807 * 15 14 13 37 37 H 1.08995 * 109.46608 * 60.00125 * 15 14 13 38 38 H 0.97006 * 119.99908 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.70637 * 256.51391 * 25 24 6 40 40 H 1.09006 * 109.70062 * 135.91069 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0403 -0.7216 1.2503 5 6 3.5533 -0.5089 1.3869 6 6 4.1999 -0.8404 0.0665 7 7 5.4919 -1.0924 -0.2003 8 1 6.2061 -1.0893 0.4560 9 7 5.6436 -1.3384 -1.4559 10 6 4.4798 -1.2628 -2.0787 11 6 4.2352 -1.4733 -3.5202 12 8 3.1090 -1.3726 -3.9666 13 7 5.2606 -1.7769 -4.3403 14 6 5.0181 -1.9851 -5.7700 15 6 6.3389 -2.3139 -6.4689 16 6 6.0895 -2.5275 -7.9397 17 1 5.0890 -2.4381 -8.3363 18 6 7.1384 -2.8380 -8.7788 19 7 8.3568 -2.9473 -8.2957 20 14 6.8292 -3.1034 -10.6018 21 1 6.2520 -1.8686 -11.1909 22 1 8.1110 -3.4236 -11.2798 23 1 5.8787 -4.2298 -10.7838 24 6 3.5221 -0.9371 -1.1037 25 6 2.0413 -0.7231 -1.2536 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8300 -1.7876 1.1651 30 1 1.5367 -0.3215 2.1303 31 1 3.9475 -1.1641 2.1637 32 1 3.7569 0.5304 1.6450 33 1 6.1594 -1.8569 -3.9842 34 1 4.3204 -2.8118 -5.9036 35 1 4.5944 -1.0787 -6.2025 36 1 7.0363 -1.4869 -6.3353 37 1 6.7629 -3.2202 -6.0365 38 1 9.0949 -3.1655 -8.8862 39 1 1.5391 -1.6853 -1.3532 40 1 1.8455 -0.1129 -2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897368318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:13 Heat of formation + Delta-G solvation = 2.941792 kcal Electronic energy + Delta-G solvation = -20919.593479 eV Core-core repulsion = 17734.395455 eV Total energy + Delta-G solvation = -3185.198025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.86395 -38.80725 -37.72066 -34.78032 -32.93746 -32.64406 -31.67801 -30.11622 -29.14404 -26.62042 -25.19592 -23.59299 -23.29583 -21.39630 -20.79001 -19.69839 -19.14648 -17.80657 -16.73176 -16.23412 -15.98922 -15.06231 -14.84588 -14.65726 -14.44689 -14.37361 -13.83976 -13.57710 -13.32835 -12.90012 -12.88303 -12.61301 -12.27301 -12.23244 -11.86152 -11.15802 -11.14319 -10.98167 -10.89830 -10.75504 -10.61847 -10.55001 -10.26270 -9.84595 -9.45663 -9.31953 -9.19223 -8.68303 -8.46362 -8.26715 -6.04111 -4.06995 1.67893 2.08635 2.76098 3.34788 3.38248 3.41352 3.73359 3.75890 4.31281 4.43135 4.46625 4.53706 4.67985 4.85664 5.01289 5.13159 5.26276 5.31935 5.32615 5.46876 5.52345 5.61120 5.63950 5.75075 5.79734 5.96589 5.99910 6.24767 6.25133 6.38857 6.41661 6.51241 6.80230 6.92297 7.00084 7.58212 7.68924 7.78499 7.94568 8.16178 8.33785 8.71173 8.98957 9.57381 11.07512 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003136 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.850629 B = 8927.551380 C = 9645.983058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.046 4.046 6 C 0.003 3.997 7 N -0.377 5.377 8 H 0.443 0.557 9 N -0.261 5.261 10 C 0.002 3.998 11 C 0.592 3.408 12 O -0.540 6.540 13 N -0.708 5.708 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.521 4.521 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.144 4.144 25 C -0.036 4.036 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.403 0.597 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 5.685 23.472 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.084 4.084 6 C -0.124 4.124 7 N -0.089 5.089 8 H 0.287 0.713 9 N -0.097 5.097 10 C -0.158 4.158 11 C 0.375 3.625 12 O -0.416 6.416 13 N -0.357 5.357 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.560 4.560 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.154 4.154 25 C -0.075 4.075 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.416 5.488 22.812 25.281 hybrid contribution 0.243 -0.097 -0.332 0.422 sum -9.173 5.392 22.480 24.871 Atomic orbital electron populations 1.21812 0.94757 1.02034 1.01760 1.21274 0.95759 0.99725 0.94477 0.91003 1.21629 0.93270 1.01578 0.98255 1.20199 0.95532 1.01982 0.90721 1.21133 0.85091 1.07991 0.98177 1.42963 1.08070 1.50898 1.06981 0.71310 1.73900 1.24861 1.19606 0.91355 1.21847 0.89913 1.08391 0.95652 1.16924 0.85161 0.77523 0.82856 1.90746 1.22422 1.52584 1.75887 1.46222 1.10443 1.68953 1.10089 1.21775 1.01226 1.00387 0.76663 1.19324 0.90545 0.97435 0.95206 1.21022 0.94385 1.48226 0.92362 0.92240 1.24999 0.95055 0.95215 0.99040 1.69958 0.99319 1.48446 1.35612 0.86569 0.77380 0.78808 0.84751 1.20109 1.21287 1.20115 1.19885 0.97291 1.07520 0.90698 1.20035 0.88498 1.01124 0.97798 0.92786 0.92286 0.92506 0.91274 0.90957 0.90401 0.90029 0.76219 0.92334 0.92343 0.95877 0.95877 0.92826 0.90585 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.09 -0.81 2.70 -90.31 -0.24 -1.05 16 3 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 4 C -0.11 -0.75 5.19 -26.47 -0.14 -0.88 16 5 C -0.05 -0.30 6.31 -27.67 -0.17 -0.48 16 6 C 0.00 0.03 7.12 -82.45 -0.59 -0.55 16 7 N -0.38 -3.98 6.82 33.42 0.23 -3.75 16 8 H 0.44 2.87 8.96 -190.22 -1.71 1.16 16 9 N -0.26 -3.82 11.96 33.28 0.40 -3.43 16 10 C 0.00 0.04 7.13 -82.98 -0.59 -0.55 16 11 C 0.59 11.50 7.82 -12.39 -0.10 11.41 16 12 O -0.54 -11.65 15.80 5.31 0.08 -11.56 16 13 N -0.71 -13.98 5.55 -61.29 -0.34 -14.32 16 14 C 0.12 2.72 5.61 -4.04 -0.02 2.70 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 17 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 20 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C -0.14 -1.98 5.99 -104.88 -0.63 -2.61 16 25 C -0.04 -0.45 4.84 -27.79 -0.13 -0.58 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 30 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.40 7.46 8.21 -40.82 -0.34 7.13 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 39 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -33.33 332.45 -9.20 -42.53 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.47 Total: 1.47 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.83 Total: -6.70 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.02 Total: -47.47 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.33 -9.20 -42.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897368318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.475 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds