Wall clock time and date at job start Mon Mar 30 2020 02:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46431 * 2 1 4 4 C 1.53110 * 109.46896 * 119.99066 * 2 1 3 5 5 C 1.53396 * 109.64297 * 190.06459 * 4 2 1 6 6 C 1.50709 * 108.33767 * 309.99358 * 5 4 2 7 7 N 1.34316 * 128.90400 * 196.70780 * 6 5 4 8 8 H 0.96998 * 124.98028 * 359.76982 * 7 6 5 9 9 N 1.28839 * 110.04308 * 179.78648 * 7 6 5 10 10 C 1.32214 * 110.15234 * 0.05370 * 9 7 6 11 11 C 1.47711 * 126.68048 * 179.75837 * 10 9 7 12 12 O 1.21566 * 119.99834 * 180.02562 * 11 10 9 13 13 N 1.34772 * 119.99690 * 0.02757 * 11 10 9 14 14 C 1.46501 * 119.99710 * 180.02562 * 13 11 10 15 15 C 1.53007 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.46817 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00324 * 359.97438 * 16 15 14 18 18 C 1.37870 * 119.99670 * 180.02562 * 16 15 14 19 19 N 1.31518 * 120.00095 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00041 * 179.97438 * 18 16 15 21 21 H 1.48492 * 109.47156 * 59.99886 * 20 18 16 22 22 H 1.48500 * 109.47118 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46944 * 299.99661 * 20 18 16 24 24 C 1.35584 * 123.87859 * 16.59385 * 6 5 4 25 25 C 1.50368 * 124.62149 * 0.31003 * 24 6 5 26 26 H 1.09004 * 109.46893 * 300.00452 * 1 2 3 27 27 H 1.08990 * 109.47634 * 60.00961 * 1 2 3 28 28 H 1.09005 * 109.47101 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.44200 * 70.01167 * 4 2 1 30 30 H 1.09003 * 109.40649 * 310.10032 * 4 2 1 31 31 H 1.09001 * 109.68778 * 190.27881 * 5 4 2 32 32 H 1.09008 * 109.72427 * 69.72648 * 5 4 2 33 33 H 0.97005 * 120.00207 * 359.97438 * 13 11 10 34 34 H 1.08996 * 109.46980 * 299.99752 * 14 13 11 35 35 H 1.09001 * 109.47059 * 59.99726 * 14 13 11 36 36 H 1.08996 * 109.47124 * 299.99807 * 15 14 13 37 37 H 1.08995 * 109.46608 * 60.00125 * 15 14 13 38 38 H 0.97006 * 119.99908 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.70637 * 256.51391 * 25 24 6 40 40 H 1.09006 * 109.70062 * 135.91069 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0403 -0.7216 1.2503 5 6 3.5533 -0.5089 1.3869 6 6 4.1999 -0.8404 0.0665 7 7 5.4919 -1.0924 -0.2003 8 1 6.2061 -1.0893 0.4560 9 7 5.6436 -1.3384 -1.4559 10 6 4.4798 -1.2628 -2.0787 11 6 4.2352 -1.4733 -3.5202 12 8 3.1090 -1.3726 -3.9666 13 7 5.2606 -1.7769 -4.3403 14 6 5.0181 -1.9851 -5.7700 15 6 6.3389 -2.3139 -6.4689 16 6 6.0895 -2.5275 -7.9397 17 1 5.0890 -2.4381 -8.3363 18 6 7.1384 -2.8380 -8.7788 19 7 8.3568 -2.9473 -8.2957 20 14 6.8292 -3.1034 -10.6018 21 1 6.2520 -1.8686 -11.1909 22 1 8.1110 -3.4236 -11.2798 23 1 5.8787 -4.2298 -10.7838 24 6 3.5221 -0.9371 -1.1037 25 6 2.0413 -0.7231 -1.2536 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5136 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8300 -1.7876 1.1651 30 1 1.5367 -0.3215 2.1303 31 1 3.9475 -1.1641 2.1637 32 1 3.7569 0.5304 1.6450 33 1 6.1594 -1.8569 -3.9842 34 1 4.3204 -2.8118 -5.9036 35 1 4.5944 -1.0787 -6.2025 36 1 7.0363 -1.4869 -6.3353 37 1 6.7629 -3.2202 -6.0365 38 1 9.0949 -3.1655 -8.8862 39 1 1.5391 -1.6853 -1.3532 40 1 1.8455 -0.1129 -2.1353 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897368318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:12 Heat of formation + Delta-G solvation = -19.978148 kcal Electronic energy + Delta-G solvation = -20920.587363 eV Core-core repulsion = 17734.395455 eV Total energy + Delta-G solvation = -3186.191908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.87619 -40.40764 -38.44655 -36.62576 -34.84967 -33.75577 -32.50541 -31.70245 -30.39629 -27.51713 -26.99849 -24.85890 -24.24462 -22.82776 -22.10136 -21.14029 -20.01391 -18.73188 -18.52761 -17.94219 -17.07636 -16.64291 -16.45873 -16.21936 -15.67659 -15.17160 -14.97292 -14.73344 -14.45702 -14.30132 -14.11505 -13.89234 -13.43606 -13.24632 -12.96384 -12.92120 -12.55573 -12.45539 -12.26124 -11.87322 -11.72456 -11.67872 -11.56194 -11.43251 -11.37554 -10.97350 -10.61409 -10.44170 -10.00857 -9.63353 -8.24328 -6.35795 0.46886 1.08103 1.41366 1.44691 1.52527 1.85998 2.26058 2.31857 2.45089 3.10008 3.35347 3.61147 3.82871 3.96011 4.11610 4.26415 4.27436 4.46211 4.50390 4.52382 4.62016 4.75177 4.81487 4.84410 4.94982 5.00717 5.04968 5.10730 5.20898 5.23330 5.33434 5.45087 5.46947 5.50473 5.54665 5.58623 5.76420 6.12161 6.13815 6.48912 6.76894 6.85579 7.14988 7.33540 8.87738 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035758 B = 0.003136 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.850629 B = 8927.551380 C = 9645.983058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.074 0.926 4 C -0.107 4.107 5 C -0.043 4.043 6 C 0.030 3.970 7 N -0.354 5.354 8 H 0.463 0.537 9 N -0.278 5.278 10 C -0.033 4.033 11 C 0.591 3.409 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.548 4.548 17 H 0.062 0.938 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.969 3.031 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.171 4.171 25 C -0.036 4.036 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.409 0.591 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.266 0.734 39 H 0.063 0.937 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 6.169 25.798 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.082 4.082 6 C -0.099 4.099 7 N -0.070 5.070 8 H 0.311 0.689 9 N -0.116 5.116 10 C -0.191 4.191 11 C 0.377 3.623 12 O -0.447 6.447 13 N -0.357 5.357 14 C 0.017 3.983 15 C -0.014 4.014 16 C -0.586 4.586 17 H 0.080 0.920 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.181 4.181 25 C -0.074 4.074 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.245 0.755 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.840 5.974 25.167 27.675 hybrid contribution 0.405 -0.230 -0.943 1.052 sum -9.435 5.744 24.224 26.624 Atomic orbital electron populations 1.21805 0.93982 1.02139 1.02287 1.21250 0.96414 0.99464 0.93571 0.90783 1.21657 0.93657 1.01118 0.98088 1.20471 0.94850 1.04083 0.88761 1.21722 0.84366 1.04830 0.98960 1.43072 1.09070 1.48713 1.06106 0.68872 1.73806 1.24295 1.20366 0.93084 1.21480 0.91783 1.11489 0.94340 1.17337 0.84378 0.76365 0.84236 1.90712 1.23402 1.53725 1.76888 1.46067 1.11094 1.69528 1.09052 1.21328 0.99059 0.99711 0.78156 1.19126 0.91581 0.95850 0.94838 1.21439 0.94798 1.48672 0.93721 0.91956 1.25931 0.94672 0.94591 1.04135 1.70075 1.00241 1.48979 1.37494 0.85441 0.77606 0.79122 0.78535 1.19188 1.20541 1.19201 1.20175 0.97861 1.08746 0.91319 1.20012 0.88138 1.00433 0.98830 0.90594 0.93423 0.92638 0.91873 0.87937 0.87281 0.87654 0.75537 0.92955 0.92967 0.97565 0.97565 0.92502 0.91829 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.16 71.98 0.66 -1.28 16 2 C -0.09 -1.37 2.70 -10.59 -0.03 -1.40 16 3 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 4 C -0.11 -1.07 5.19 30.76 0.16 -0.91 16 5 C -0.04 -0.37 6.31 29.98 0.19 -0.18 16 6 C 0.03 0.55 7.12 41.57 0.30 0.85 16 7 N -0.35 -6.69 6.82 -48.18 -0.33 -7.02 16 8 H 0.46 4.52 8.96 -219.80 -1.97 2.55 16 9 N -0.28 -8.01 11.96 -48.61 -0.58 -8.59 16 10 C -0.03 -1.11 7.13 42.14 0.30 -0.81 16 11 C 0.59 24.10 7.82 86.75 0.68 24.77 16 12 O -0.57 -25.92 15.80 -3.92 -0.06 -25.99 16 13 N -0.71 -29.28 5.55 -466.10 -2.59 -31.87 16 14 C 0.14 6.58 5.61 86.38 0.48 7.07 16 15 C 0.02 1.26 5.09 29.85 0.15 1.42 16 16 C -0.55 -31.74 9.11 25.60 0.23 -31.51 16 17 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 20 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.17 -4.66 5.99 -20.03 -0.12 -4.78 16 25 C -0.04 -0.90 4.84 29.91 0.14 -0.75 16 26 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 0.74 8.11 -2.39 -0.02 0.72 16 30 H 0.10 0.50 8.11 -2.39 -0.02 0.48 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.41 15.86 8.21 -92.70 -0.76 15.10 16 34 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 39 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 40 H 0.05 1.67 7.67 -2.38 -0.02 1.65 16 Total: -1.00 -74.58 332.45 0.69 -73.89 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -1.67 Total: 15.57 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 3.61 Total: -6.76 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -3.21 Total: -103.40 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.06 Total: -25.99 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -74.58 0.69 -73.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897368318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.911 kcal (2) G-P(sol) polarization free energy of solvation -74.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds