Wall clock time and date at job start Mon Mar 30 2020 02:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46799 * 2 1 4 4 C 1.50705 * 109.47183 * 240.00203 * 2 1 3 5 5 O 1.21276 * 119.99295 * 240.00462 * 4 2 1 6 6 N 1.34772 * 120.00005 * 59.99516 * 4 2 1 7 7 C 1.46497 * 119.99640 * 180.02562 * 6 4 2 8 8 C 1.53001 * 109.47290 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46949 * 300.00191 * 8 7 6 10 10 C 1.53004 * 109.47135 * 59.99808 * 8 7 6 11 11 C 1.50696 * 109.47723 * 179.97438 * 8 7 6 12 12 H 1.08001 * 119.99656 * 1.34992 * 11 8 7 13 13 C 1.37880 * 120.00369 * 181.34431 * 11 8 7 14 14 N 1.31516 * 119.99845 * 193.98166 * 13 11 8 15 15 Si 1.86801 * 119.99788 * 13.98200 * 13 11 8 16 16 H 1.48491 * 109.46909 * 84.54645 * 15 13 11 17 17 H 1.48502 * 109.46696 * 204.54836 * 15 13 11 18 18 H 1.48505 * 109.46912 * 324.54402 * 15 13 11 19 19 C 1.50699 * 109.47012 * 120.00030 * 2 1 3 20 20 C 1.38388 * 120.00311 * 34.99614 * 19 2 1 21 21 N 1.32124 * 119.99982 * 179.97438 * 20 19 2 22 22 C 1.32157 * 119.99891 * 0.02562 * 21 20 19 23 23 C 1.38348 * 119.99796 * 0.02562 * 22 21 20 24 24 N 1.32121 * 119.99665 * 214.72490 * 19 2 1 25 25 H 1.08998 * 109.47623 * 300.00051 * 1 2 3 26 26 H 1.09004 * 109.47244 * 60.00057 * 1 2 3 27 27 H 1.08999 * 109.47345 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00090 * 0.02562 * 6 4 2 29 29 H 1.09000 * 109.47485 * 299.99893 * 7 6 4 30 30 H 1.08999 * 109.47495 * 60.00897 * 7 6 4 31 31 H 1.09005 * 109.47111 * 69.36783 * 9 8 7 32 32 H 1.09002 * 109.47211 * 189.36378 * 9 8 7 33 33 H 1.08995 * 109.47493 * 309.36408 * 9 8 7 34 34 H 1.08998 * 109.46764 * 60.00330 * 10 8 7 35 35 H 1.09004 * 109.47252 * 180.02562 * 10 8 7 36 36 H 1.09005 * 109.47327 * 300.00498 * 10 8 7 37 37 H 0.97001 * 119.99188 * 180.02562 * 14 13 11 38 38 H 1.08004 * 119.99686 * 0.02562 * 20 19 2 39 39 H 1.07997 * 119.99823 * 180.02562 * 22 21 20 40 40 H 1.07997 * 119.99205 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6852 -0.2193 -4.9000 9 6 0.1552 -0.2182 -4.9001 10 6 2.1962 1.2229 -4.9000 11 6 2.1876 -0.9296 -6.1304 12 1 2.7901 -1.8205 -6.0315 13 6 1.8780 -0.4423 -7.3826 14 7 2.0714 -1.1915 -8.4460 15 14 1.1840 1.2820 -7.5683 16 1 2.2984 2.2625 -7.6078 17 1 0.4037 1.3683 -8.8289 18 1 0.2979 1.5857 -6.4159 19 6 2.0323 -0.7104 1.2305 20 6 1.3374 -1.7955 1.7352 21 7 1.7781 -2.4186 2.8137 22 6 2.8823 -2.0053 3.4107 23 6 3.5764 -0.9199 2.9067 24 7 3.1391 -0.3006 1.8242 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.1493 0.5389 -2.5436 29 1 3.2846 -0.9413 -3.6509 30 1 1.8309 -1.9684 -3.6506 31 1 -0.2077 0.4339 -4.1056 32 1 -0.2078 0.1442 -5.8618 33 1 -0.2089 -1.2319 -4.7328 34 1 3.2862 1.2221 -4.8999 35 1 1.8329 1.7371 -5.7898 36 1 1.8332 1.7370 -4.0100 37 1 1.8540 -0.8484 -9.3269 38 1 0.4352 -2.1334 1.2470 39 1 3.2428 -2.5149 4.2920 40 1 4.4790 -0.5825 3.3944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909881262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:55 Heat of formation + Delta-G solvation = -6.405154 kcal Electronic energy + Delta-G solvation = -21575.025662 eV Core-core repulsion = 18389.422324 eV Total energy + Delta-G solvation = -3185.603339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.25121 -40.78840 -38.46612 -35.87192 -35.13006 -34.75417 -33.39098 -31.03467 -28.02675 -27.69371 -26.99821 -26.29085 -25.44451 -23.86721 -21.27337 -20.94319 -18.73296 -18.36176 -18.07601 -17.94436 -17.22320 -16.96235 -16.37802 -16.07006 -15.69371 -15.16115 -14.98014 -14.86917 -14.68327 -14.31319 -14.00866 -13.77135 -13.72398 -13.36452 -12.96359 -12.78063 -12.64006 -12.40743 -12.38902 -12.22532 -12.14124 -11.93982 -11.74884 -11.09673 -10.88420 -10.61420 -10.38961 -10.18812 -10.07909 -10.00775 -8.29884 -6.31975 -0.20543 0.15424 1.37499 1.39299 1.52502 1.61605 2.18113 2.35684 2.80071 2.99318 3.06617 3.35105 3.51643 3.64702 3.89587 4.06838 4.09968 4.12527 4.32658 4.37588 4.42725 4.45443 4.62012 4.76416 4.82300 4.83939 4.89522 4.90450 4.96743 5.07710 5.18283 5.25787 5.40969 5.43240 5.54358 5.72707 5.81812 6.30054 6.30431 6.59974 6.72980 6.80230 7.26519 7.33099 8.87529 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039980 B = 0.003755 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.186671 B = 7454.690671 C = 7596.777698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.051 4.051 3 H 0.134 0.866 4 C 0.516 3.484 5 O -0.591 6.591 6 N -0.703 5.703 7 C 0.158 3.842 8 C 0.028 3.972 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.520 4.520 12 H 0.024 0.976 13 C 0.015 3.985 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.283 1.283 17 H -0.316 1.316 18 H -0.198 1.198 19 C 0.091 3.909 20 C 0.053 3.947 21 N -0.461 5.461 22 C 0.043 3.957 23 C 0.049 3.951 24 N -0.460 5.460 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.414 0.586 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.264 0.736 38 H 0.179 0.821 39 H 0.205 0.795 40 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 7.771 23.507 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.074 4.074 3 H 0.152 0.848 4 C 0.303 3.697 5 O -0.471 6.471 6 N -0.355 5.355 7 C 0.034 3.966 8 C 0.027 3.973 9 C -0.198 4.198 10 C -0.205 4.205 11 C -0.558 4.558 12 H 0.042 0.958 13 C -0.182 4.182 14 N -0.587 5.587 15 Si 0.775 3.225 16 H -0.211 1.211 17 H -0.246 1.246 18 H -0.121 1.121 19 C -0.049 4.049 20 C -0.106 4.106 21 N -0.176 5.176 22 C -0.116 4.116 23 C -0.111 4.111 24 N -0.175 5.175 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.085 0.915 28 H 0.253 0.747 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.195 0.805 39 H 0.222 0.778 40 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.751 7.036 23.396 24.889 hybrid contribution 0.286 0.282 -1.129 1.198 sum -4.465 7.318 22.267 23.860 Atomic orbital electron populations 1.21958 0.88575 1.04081 1.05576 1.20210 0.99757 1.00858 0.86550 0.84783 1.20872 0.79524 0.84037 0.85264 1.90699 1.40132 1.28846 1.87473 1.45956 1.52894 1.32030 1.04655 1.21023 0.97121 0.95069 0.83402 1.18655 0.94098 0.93041 0.91523 1.22216 0.95636 1.00834 1.01116 1.22310 1.00873 0.96805 1.00498 1.21052 1.32975 1.11035 0.90767 0.95793 1.25904 0.95385 1.01799 0.95140 1.70126 1.50756 1.38401 0.99442 0.86322 0.79446 0.79595 0.77155 1.21059 1.24571 1.12135 1.21719 0.91933 0.95050 0.96227 1.23770 1.01246 0.92384 0.93169 1.68488 1.13491 1.27727 1.07895 1.24391 0.91178 0.95222 1.00845 1.24357 1.01147 0.93547 0.92074 1.68189 1.11071 1.30058 1.08175 0.88903 0.88821 0.91473 0.74713 0.94462 0.94096 0.90959 0.93663 0.93990 0.93789 0.94600 0.90382 0.92692 0.80454 0.77830 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 8.52 71.98 0.61 -1.25 16 2 C -0.05 -1.05 3.06 -12.28 -0.04 -1.09 16 3 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 4 C 0.52 15.49 7.15 87.66 0.63 16.12 16 5 O -0.59 -23.97 16.03 -3.02 -0.05 -24.01 16 6 N -0.70 -20.18 4.90 -463.07 -2.27 -22.45 16 7 C 0.16 6.18 4.49 86.38 0.39 6.57 16 8 C 0.03 1.15 0.50 -52.93 -0.03 1.13 16 9 C -0.14 -5.02 7.53 71.98 0.54 -4.48 16 10 C -0.15 -5.34 7.52 71.98 0.54 -4.80 16 11 C -0.52 -28.59 8.62 25.60 0.22 -28.37 16 12 H 0.02 1.51 7.99 -2.91 -0.02 1.48 16 13 C 0.01 0.84 5.32 84.66 0.45 1.29 16 14 N -0.95 -58.85 13.96 21.45 0.30 -58.55 16 15 Si 0.95 41.97 22.79 68.60 1.56 43.53 16 16 H -0.28 -12.39 7.10 99.48 0.71 -11.68 16 17 H -0.32 -14.54 7.11 99.48 0.71 -13.83 16 18 H -0.20 -7.20 4.65 99.48 0.46 -6.74 16 19 C 0.09 2.21 5.03 42.55 0.21 2.42 16 20 C 0.05 1.25 10.33 84.68 0.87 2.12 16 21 N -0.46 -10.83 10.50 -195.22 -2.05 -12.88 16 22 C 0.04 0.77 11.23 84.67 0.95 1.72 16 23 C 0.05 0.90 11.22 84.67 0.95 1.85 16 24 N -0.46 -11.40 10.42 -183.30 -1.91 -13.31 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.90 7.57 -2.38 -0.02 0.89 16 27 H 0.07 0.92 6.52 -2.39 -0.02 0.90 16 28 H 0.41 8.85 5.68 -92.71 -0.53 8.33 16 29 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.87 7.13 -2.38 -0.02 1.85 16 32 H 0.04 1.73 4.30 -2.39 -0.01 1.72 16 33 H 0.04 1.53 8.12 -2.39 -0.02 1.51 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.04 1.35 2.25 -2.38 -0.01 1.34 16 36 H 0.08 2.07 6.86 -2.38 -0.02 2.05 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.18 3.51 6.33 -2.91 -0.02 3.49 16 39 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -78.66 315.84 2.19 -76.47 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.29 Total: 17.97 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 6.31 Total: -6.77 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -5.93 Total: -107.19 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.56 Total: 43.53 kcal Total: -78.66 2.19 -76.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909881262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.067 kcal (2) G-P(sol) polarization free energy of solvation -78.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds