Wall clock time and date at job start Mon Mar 30 2020 02:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 8 8 O 1.42891 * 109.46947 * 299.99729 * 6 5 4 9 9 C 1.50703 * 109.46807 * 179.97438 * 6 5 4 10 10 H 1.07995 * 120.00107 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99714 * 179.97438 * 9 6 5 12 12 N 1.31510 * 119.99944 * 0.02562 * 11 9 6 13 13 Si 1.86799 * 119.99765 * 179.97438 * 11 9 6 14 14 H 1.48499 * 109.47110 * 90.00207 * 13 11 9 15 15 H 1.48501 * 109.47137 * 210.00199 * 13 11 9 16 16 H 1.48496 * 109.47323 * 330.00240 * 13 11 9 17 17 C 1.53000 * 109.46850 * 239.99678 * 2 1 3 18 18 C 1.53008 * 109.46989 * 180.02562 * 17 2 1 19 19 C 1.52992 * 109.47244 * 180.02562 * 18 17 2 20 20 C 1.53004 * 109.47371 * 59.99987 * 19 18 17 21 21 F 1.39894 * 109.47527 * 179.97438 * 20 19 18 22 22 F 1.39900 * 109.46962 * 59.99862 * 20 19 18 23 23 C 1.53004 * 109.46788 * 300.00517 * 20 19 18 24 24 C 1.52992 * 109.47587 * 59.99615 * 23 20 19 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 0.96703 * 114.00376 * 300.00063 * 8 6 5 32 32 H 0.97007 * 120.00038 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.47174 * 299.99851 * 17 2 1 34 34 H 1.09004 * 109.47058 * 300.00308 * 18 17 2 35 35 H 1.09000 * 109.46843 * 59.99545 * 18 17 2 36 36 H 1.09004 * 109.47332 * 300.00125 * 19 18 17 37 37 H 1.08997 * 109.47172 * 180.02562 * 19 18 17 38 38 H 1.09004 * 109.46874 * 299.99225 * 23 20 19 39 39 H 1.09004 * 109.47110 * 179.97438 * 23 20 19 40 40 H 1.08997 * 109.47172 * 179.97438 * 24 23 20 41 41 H 1.09004 * 109.47332 * 59.99890 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 1 3.5917 -0.9261 3.3683 8 8 1.7099 -1.6127 3.8743 9 6 2.6612 0.4062 4.7512 10 1 2.3661 1.4386 4.6353 11 6 3.0975 -0.0528 5.9759 12 7 3.4574 -1.3098 6.1169 13 14 3.1788 1.1113 7.4346 14 1 1.8852 1.0827 8.1633 15 1 4.2705 0.6861 8.3470 16 1 3.4452 2.4905 6.9530 17 6 2.0399 -0.7213 -1.2492 18 6 3.5700 -0.7219 -1.2489 19 6 4.0800 -1.4426 -2.4984 20 6 3.5705 -0.7205 -3.7474 21 9 4.0373 -1.3792 -4.8899 22 9 4.0373 0.5983 -3.7466 23 6 2.0405 -0.7199 -3.7476 24 6 1.5305 0.0008 -2.4982 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9173 -1.1205 1.0288 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5525 31 1 0.8039 -1.3358 4.0683 32 1 3.7648 -1.6326 6.9785 33 1 1.6766 -1.7490 -1.2491 34 1 3.9337 0.3057 -1.2487 35 1 3.9329 -1.2359 -0.3589 36 1 3.7162 -2.4702 -2.4991 37 1 5.1699 -1.4434 -2.4979 38 1 1.6767 -1.7475 -3.7483 39 1 1.6775 -0.2051 -4.6372 40 1 0.4405 0.0016 -2.4986 41 1 1.8942 1.0284 -2.4975 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930893560.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:27 Heat of formation + Delta-G solvation = -198.341908 kcal Electronic energy + Delta-G solvation = -22504.694613 eV Core-core repulsion = 18860.079085 eV Total energy + Delta-G solvation = -3644.615527 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 277.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96321 -47.96498 -40.01859 -38.00201 -36.00932 -34.20991 -32.68069 -31.95388 -29.59597 -29.07122 -26.23526 -24.07550 -23.90593 -22.37213 -21.49386 -20.77605 -18.96913 -18.41993 -17.80231 -17.21301 -17.14161 -16.65431 -16.19182 -15.66822 -15.59157 -15.28251 -14.82634 -14.80239 -14.54139 -14.33452 -14.26666 -13.87014 -13.56809 -13.43104 -13.30349 -12.99407 -12.93502 -12.81115 -12.76708 -12.51104 -12.40529 -12.23701 -12.06502 -11.97905 -11.46596 -11.31223 -11.03373 -10.91454 -10.71106 -10.03337 -9.16694 -8.12853 -6.38814 1.40908 1.41145 1.51966 2.39005 2.81761 3.13059 3.13900 3.25847 3.38736 3.41976 3.83928 3.98779 4.02937 4.15351 4.30121 4.34094 4.39840 4.47474 4.54821 4.61428 4.67338 4.70286 4.81081 4.86608 4.91712 4.98448 5.02680 5.04674 5.10256 5.18392 5.25352 5.41950 5.53040 5.61714 5.77618 6.06679 6.28311 6.59238 6.75741 7.35625 7.63287 8.91478 Molecular weight = 277.16amu Principal moments of inertia in cm(-1) A = 0.032141 B = 0.003485 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.949100 B = 8032.328748 C = 8292.615694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.030 0.970 4 N -0.681 5.681 5 C 0.056 3.944 6 C 0.234 3.766 7 H 0.017 0.983 8 O -0.569 6.569 9 C -0.589 4.589 10 H 0.057 0.943 11 C 0.027 3.973 12 N -0.899 5.899 13 Si 0.959 3.041 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.266 1.266 17 C -0.083 4.083 18 C -0.119 4.119 19 C -0.152 4.152 20 C 0.279 3.721 21 F -0.214 7.214 22 F -0.214 7.214 23 C -0.150 4.150 24 C -0.109 4.109 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.335 0.665 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.352 0.648 32 H 0.261 0.739 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 1.620 -20.164 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.048 0.952 4 N -0.314 5.314 5 C -0.073 4.073 6 C 0.176 3.824 7 H 0.035 0.965 8 O -0.372 6.372 9 C -0.627 4.627 10 H 0.075 0.925 11 C -0.176 4.176 12 N -0.536 5.536 13 Si 0.784 3.216 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.102 4.102 18 C -0.157 4.157 19 C -0.189 4.189 20 C 0.243 3.757 21 F -0.195 7.195 22 F -0.195 7.195 23 C -0.188 4.188 24 C -0.146 4.146 25 H 0.078 0.922 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.928 0.903 -20.022 20.424 hybrid contribution 0.908 1.481 0.827 1.924 sum -3.020 2.383 -19.196 19.577 Atomic orbital electron populations 1.21810 0.93881 1.02235 1.01363 1.21607 0.96569 0.95179 0.89011 0.95182 1.60556 1.33528 1.33238 1.04098 1.22472 0.99552 0.93529 0.91775 1.19168 0.88545 0.84729 0.89955 0.96504 1.86488 1.22141 1.36275 1.92291 1.22054 1.46967 0.97149 0.96567 0.92464 1.25881 0.93563 0.96331 1.01811 1.70216 1.42541 1.15961 1.24882 0.85573 0.77952 0.79233 0.78890 1.19759 1.20880 1.19029 1.21329 0.94160 1.01031 0.93680 1.21595 0.96160 1.00851 0.97118 1.22473 1.02938 1.01569 0.91964 1.21498 0.95231 0.75118 0.83848 1.92978 1.90831 1.81203 1.54461 1.92963 1.90775 1.38927 1.96868 1.22522 0.89694 1.05456 1.01128 1.21579 1.02639 0.99029 0.91394 0.92197 0.94362 0.90280 0.84464 0.96472 0.91985 0.80351 0.92997 0.89217 0.92126 0.90872 0.87086 0.89638 0.87007 0.88585 0.88224 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.06 71.98 0.65 -2.43 16 2 C 0.09 2.18 2.23 44.91 0.10 2.28 16 3 H 0.03 0.82 7.80 -2.38 -0.02 0.80 16 4 N -0.68 -22.72 6.18 -491.55 -3.04 -25.75 16 5 C 0.06 2.27 5.09 86.30 0.44 2.71 16 6 C 0.23 11.93 3.03 29.85 0.09 12.02 16 7 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 8 O -0.57 -29.82 12.59 -148.98 -1.88 -31.69 16 9 C -0.59 -32.40 8.76 25.60 0.22 -32.18 16 10 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 11 C 0.03 1.49 5.40 84.66 0.46 1.95 16 12 N -0.90 -53.88 12.84 21.45 0.28 -53.60 16 13 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 17 C -0.08 -1.61 1.91 -10.79 -0.02 -1.64 16 18 C -0.12 -2.46 4.85 30.59 0.15 -2.31 16 19 C -0.15 -2.68 5.45 30.59 0.17 -2.51 16 20 C 0.28 5.26 2.10 30.60 0.06 5.32 16 21 F -0.21 -4.56 17.06 44.97 0.77 -3.79 16 22 F -0.21 -4.99 16.02 44.97 0.72 -4.27 16 23 C -0.15 -2.09 5.45 30.59 0.17 -1.93 16 24 C -0.11 -1.66 4.73 30.59 0.14 -1.51 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 0.99 7.45 -2.38 -0.02 0.98 16 27 H 0.08 1.35 6.43 -2.39 -0.02 1.33 16 28 H 0.34 11.18 6.16 -89.69 -0.55 10.63 16 29 H 0.02 0.69 8.06 -2.39 -0.02 0.68 16 30 H 0.06 2.47 7.44 -2.39 -0.02 2.45 16 31 H 0.35 16.64 9.04 -74.06 -0.67 15.98 16 32 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.38 7.80 -2.38 -0.02 1.36 16 35 H 0.07 1.67 6.21 -2.39 -0.01 1.65 16 36 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.10 1.22 6.43 -2.39 -0.02 1.20 16 41 H 0.06 1.11 7.80 -2.38 -0.02 1.09 16 Total: -1.00 -64.66 327.28 1.32 -63.33 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.19 Total: 30.68 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 2.63 Total: -20.24 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.76 Total: -79.35 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.88 Total: -31.69 kcal Atomic # 9 Polarization: -9.55 SS G_CDS: 1.49 Total: -8.06 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.66 1.32 -63.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930893560.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.007 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds