Wall clock time and date at job start Mon Mar 30 2020 02:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47560 * 2 1 4 4 C 1.52994 * 109.47079 * 120.00221 * 2 1 3 5 5 C 1.50702 * 109.47098 * 184.99775 * 4 2 1 6 6 C 1.38677 * 120.41881 * 89.99960 * 5 4 2 7 7 C 1.38628 * 118.41857 * 179.97438 * 6 5 4 8 8 C 1.38215 * 119.16579 * 0.02562 * 7 6 5 9 9 N 1.31854 * 120.76332 * 359.97438 * 8 7 6 10 10 C 1.31888 * 121.72838 * 0.02562 * 9 8 7 11 11 N 1.46907 * 109.47097 * 240.00138 * 2 1 3 12 12 C 1.46901 * 111.00077 * 84.99880 * 11 2 1 13 13 C 1.50696 * 109.46946 * 180.02562 * 12 11 2 14 14 O 1.21278 * 120.00224 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99686 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99862 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.47242 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99378 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00283 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00225 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47227 * 90.00089 * 21 19 17 23 23 H 1.48497 * 109.47172 * 210.00169 * 21 19 17 24 24 H 1.48497 * 109.47156 * 330.00194 * 21 19 17 25 25 H 1.08996 * 109.47115 * 300.00282 * 1 2 3 26 26 H 1.09005 * 109.46901 * 59.99690 * 1 2 3 27 27 H 1.08996 * 109.47053 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47138 * 65.00338 * 4 2 1 29 29 H 1.08994 * 109.47210 * 304.99642 * 4 2 1 30 30 H 1.08003 * 120.78603 * 0.02562 * 6 5 4 31 31 H 1.08005 * 120.41354 * 179.97438 * 7 6 5 32 32 H 1.07995 * 119.62265 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.61890 * 179.97438 * 10 9 8 34 34 H 1.00894 * 110.99933 * 208.95639 * 11 2 1 35 35 H 1.08996 * 109.47051 * 300.00044 * 12 11 2 36 36 H 1.09007 * 109.46963 * 60.00121 * 12 11 2 37 37 H 0.96994 * 120.00269 * 359.97438 * 15 13 12 38 38 H 1.09000 * 109.46962 * 300.00182 * 16 15 13 39 39 H 1.08998 * 109.46889 * 59.99974 * 16 15 13 40 40 H 0.97004 * 119.99749 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 6 4.1434 0.4489 1.9680 7 6 5.5282 0.5053 2.0014 8 6 6.2581 -0.4932 1.3845 9 7 5.6521 -1.4903 0.7704 10 6 4.3371 -1.5764 0.7185 11 7 2.0197 -0.6925 -1.1995 12 6 2.0824 0.2226 -2.3470 13 6 2.5873 -0.5218 -3.5561 14 8 2.8668 -1.6989 -3.4705 15 7 2.7282 0.1205 -4.7325 16 6 3.2195 -0.6030 -5.9079 17 6 3.2838 0.3357 -7.0851 18 1 2.9886 1.3681 -6.9691 19 6 3.7204 -0.1232 -8.3097 20 7 4.0803 -1.3802 -8.4506 21 14 3.7994 1.0402 -9.7690 22 1 5.1351 1.6878 -9.8141 23 1 3.5768 0.2770 -11.0232 24 1 2.7493 2.0809 -9.6298 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.7516 -1.7716 1.2054 29 1 1.6054 -0.2618 2.1369 30 1 3.5472 1.2148 2.4417 31 1 6.0303 1.3197 2.5026 32 1 7.3372 -0.4568 1.4065 33 1 3.8764 -2.4078 0.2059 34 1 2.9172 -1.1205 -1.0288 35 1 1.0871 0.6163 -2.5526 36 1 2.7589 1.0462 -2.1183 37 1 2.5043 1.0618 -4.8011 38 1 4.2147 -0.9971 -5.7021 39 1 2.5429 -1.4264 -6.1367 40 1 4.3872 -1.7031 -9.3123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934239046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:25 Heat of formation + Delta-G solvation = -13.536883 kcal Electronic energy + Delta-G solvation = -20791.910574 eV Core-core repulsion = 17605.997980 eV Total energy + Delta-G solvation = -3185.912594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50071 -38.88696 -37.11524 -34.14989 -33.32254 -32.31169 -32.02577 -30.81766 -27.75637 -26.99961 -25.45331 -23.77952 -22.63572 -22.15423 -20.52231 -19.64753 -17.29786 -17.25445 -16.63673 -16.12561 -15.68599 -15.52531 -15.26432 -14.74323 -14.50261 -14.06288 -13.96224 -13.58496 -13.27870 -13.00484 -12.75134 -12.49229 -12.46227 -12.16374 -11.96995 -11.76166 -11.59413 -11.31412 -11.06638 -10.95806 -10.85546 -10.30100 -9.99036 -9.56917 -9.37638 -9.17729 -8.98191 -8.71422 -8.40059 -7.83717 -6.14539 -4.21539 0.89200 1.07150 3.25244 3.31147 3.33675 3.41809 3.59919 3.81599 4.24609 4.31208 4.48813 4.52416 4.60575 4.71109 4.76947 4.86417 5.07837 5.16884 5.21366 5.27706 5.39397 5.46220 5.54217 5.59979 5.61939 5.67529 5.70334 5.85759 5.88078 6.03970 6.17708 6.51205 6.94047 7.34186 7.39192 7.47950 7.55321 7.69570 7.83325 7.99584 8.66164 8.81011 9.14684 9.45138 10.95700 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.003440 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.413966 B = 8137.369580 C = 8834.202312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.087 3.913 3 H 0.044 0.956 4 C -0.080 4.080 5 C -0.142 4.142 6 C -0.075 4.075 7 C -0.173 4.173 8 C 0.093 3.907 9 N -0.476 5.476 10 C 0.103 3.897 11 N -0.669 5.669 12 C 0.040 3.960 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.350 0.650 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 6.809 22.792 23.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.062 0.938 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.101 4.101 7 C -0.193 4.193 8 C -0.064 4.064 9 N -0.184 5.184 10 C -0.054 4.054 11 N -0.304 5.304 12 C -0.093 4.093 13 C 0.280 3.720 14 O -0.420 6.420 15 N -0.364 5.364 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.221 0.779 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.850 4.899 22.110 22.825 hybrid contribution 0.316 2.347 -0.324 2.391 sum -2.534 7.246 21.787 23.099 Atomic orbital electron populations 1.21805 0.93951 1.02793 1.01275 1.21535 0.96134 0.95685 0.88913 0.93829 1.20784 0.89688 1.03120 0.98224 1.21004 0.97467 0.96348 0.99601 1.21489 0.94831 0.96982 0.96765 1.22150 0.94788 1.00682 1.01709 1.22835 1.00687 0.89827 0.93030 1.67753 1.11453 1.23776 1.15447 1.22904 0.89104 0.97930 0.95470 1.60299 1.35106 1.31986 1.03024 1.21888 1.01985 0.94318 0.91110 1.20341 0.79219 0.87915 0.84552 1.90662 1.50620 1.15853 1.84853 1.46440 1.65539 1.13774 1.10629 1.19091 0.94970 0.92495 0.80467 1.21227 1.46087 0.96477 0.94382 0.91949 1.24953 0.94842 0.95325 0.98908 1.69980 1.42908 1.14310 1.25035 0.86416 0.78454 0.80487 0.81553 1.20488 1.20983 1.19760 0.92629 0.92423 0.91578 0.89314 0.89882 0.84974 0.84850 0.82797 0.82199 0.82819 0.88531 0.93151 0.77862 0.95618 0.95495 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.41 37.16 0.35 -0.91 16 2 C 0.09 0.88 2.64 -67.71 -0.18 0.70 16 3 H 0.04 0.43 7.80 -51.93 -0.40 0.02 16 4 C -0.08 -0.68 5.00 -27.88 -0.14 -0.82 16 5 C -0.14 -1.43 4.85 -104.48 -0.51 -1.94 16 6 C -0.07 -0.65 9.86 -39.28 -0.39 -1.04 16 7 C -0.17 -1.51 10.11 -39.45 -0.40 -1.91 16 8 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 9 N -0.48 -6.44 10.36 -13.26 -0.14 -6.57 16 10 C 0.10 1.27 9.22 -17.55 -0.16 1.11 16 11 N -0.67 -9.34 5.93 -107.99 -0.64 -9.98 16 12 C 0.04 0.59 5.97 -4.98 -0.03 0.56 16 13 C 0.50 10.19 7.87 -10.99 -0.09 10.10 16 14 O -0.54 -13.43 16.20 5.56 0.09 -13.34 16 15 N -0.71 -15.39 5.55 -61.47 -0.34 -15.73 16 16 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 17 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 18 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 19 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 20 N -0.88 -26.45 13.29 55.43 0.74 -25.71 16 21 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 29 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 31 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.16 1.97 7.53 -52.49 -0.39 1.57 16 34 H 0.35 5.27 5.22 -39.29 -0.20 5.07 16 35 H 0.10 1.25 7.44 -51.93 -0.39 0.86 16 36 H 0.05 0.67 8.06 -51.92 -0.42 0.25 16 37 H 0.39 7.14 8.32 -40.82 -0.34 6.80 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -34.07 339.11 -8.25 -42.33 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.87 Total: 8.06 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.18 Total: -0.19 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.38 Total: -57.99 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.07 -8.25 -42.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934239046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.788 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds