Wall clock time and date at job start Mon Mar 30 2020 02:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.52458 * 2 1 4 4 C 1.53197 * 109.49259 * 239.92513 * 2 1 3 5 5 N 1.46936 * 108.88860 * 185.34194 * 4 2 1 6 6 C 1.36935 * 120.62903 * 233.67990 * 5 4 2 7 7 H 1.08004 * 119.99817 * 27.39183 * 6 5 4 8 8 C 1.38804 * 120.00238 * 207.39383 * 6 5 4 9 9 N 1.31624 * 120.00025 * 17.25587 * 8 6 5 10 10 Si 1.86801 * 120.00311 * 197.25673 * 8 6 5 11 11 H 1.48505 * 109.47002 * 90.00337 * 10 8 6 12 12 H 1.48506 * 109.47209 * 209.99842 * 10 8 6 13 13 H 1.48497 * 109.47373 * 330.00036 * 10 8 6 14 14 C 1.47199 * 118.55327 * 53.53924 * 5 4 2 15 15 C 1.53191 * 108.85944 * 306.47272 * 14 5 4 16 16 C 1.53035 * 109.49913 * 120.08699 * 2 1 3 17 17 H 1.09002 * 109.46081 * 61.29511 * 16 2 1 18 18 N 1.46496 * 109.46009 * 301.32084 * 16 2 1 19 19 C 1.34780 * 119.99987 * 154.99762 * 18 16 2 20 20 O 1.21694 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.46685 * 119.99834 * 179.97438 * 19 18 16 22 22 C 1.37869 * 126.23034 * 179.68837 * 21 19 18 23 23 C 1.39834 * 107.08335 * 179.84835 * 22 21 19 24 24 C 1.35451 * 107.86604 * 0.42475 * 23 22 21 25 25 N 1.35536 * 108.87108 * 359.73690 * 24 23 22 26 26 H 0.96995 * 125.67734 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46763 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46619 * 300.07496 * 1 2 3 29 29 H 1.09002 * 109.47431 * 60.07843 * 1 2 3 30 30 H 1.08995 * 109.58688 * 305.19743 * 4 2 1 31 31 H 1.08992 * 109.59155 * 65.48496 * 4 2 1 32 32 H 0.96996 * 120.00327 * 179.97438 * 9 8 6 33 33 H 1.09006 * 109.53081 * 186.67784 * 14 5 4 34 34 H 1.08996 * 109.56546 * 66.29932 * 14 5 4 35 35 H 1.08997 * 109.49792 * 294.70915 * 15 14 5 36 36 H 1.08993 * 109.52877 * 174.61786 * 15 14 5 37 37 H 0.96997 * 120.00026 * 335.00429 * 18 16 2 38 38 H 1.08002 * 126.45755 * 0.02562 * 22 21 19 39 39 H 1.08005 * 126.07043 * 180.15708 * 23 22 21 40 40 H 1.07997 * 125.56890 * 179.71148 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2497 5 7 3.5048 -0.8290 -1.1732 6 6 4.2913 -0.3775 -2.1992 7 1 3.9408 0.4200 -2.8377 8 6 5.5390 -0.9448 -2.4187 9 7 5.8336 -2.1126 -1.8877 10 14 6.8000 -0.0510 -3.4677 11 1 7.6276 0.8293 -2.6042 12 1 7.6735 -1.0431 -4.1446 13 1 6.1017 0.7714 -4.4881 14 6 4.1052 -1.4267 0.0305 15 6 3.5710 -0.6951 1.2658 16 6 2.0408 -0.7232 1.2482 17 1 1.6968 -1.7574 1.2351 18 7 1.5269 -0.0530 2.4452 19 6 1.3988 -0.7383 3.5987 20 8 1.7106 -1.9137 3.6460 21 6 0.8848 -0.0670 4.7974 22 6 0.6966 -0.6424 6.0360 23 6 0.1967 0.3540 6.8802 24 6 0.0818 1.4930 6.1561 25 7 0.4967 1.2505 4.8888 26 1 0.5164 1.8975 4.1664 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5150 0.8893 29 1 -0.3634 0.5126 -0.8907 30 1 1.6052 -1.7215 -1.2982 31 1 1.7615 -0.1591 -2.1391 32 1 6.7054 -2.5092 -2.0414 33 1 5.1896 -1.3245 -0.0140 34 1 3.8375 -2.4818 0.0864 35 1 3.9160 0.3387 1.2539 36 1 3.9335 -1.1894 2.1671 37 1 1.2787 0.8839 2.4076 38 1 0.8998 -1.6686 6.3046 39 1 -0.0571 0.2355 7.9233 40 1 -0.2815 2.4397 6.5277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941808913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:30 Heat of formation + Delta-G solvation = 1.209740 kcal Electronic energy + Delta-G solvation = -21751.215267 eV Core-core repulsion = 18565.942135 eV Total energy + Delta-G solvation = -3185.273132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21144 -40.67815 -39.01979 -36.24714 -34.29913 -32.96418 -32.15824 -31.65162 -30.00653 -27.44271 -26.90586 -24.50388 -23.00624 -22.68445 -21.38696 -21.33449 -20.89870 -19.67415 -18.67416 -17.28995 -16.90032 -16.57371 -16.23758 -15.63595 -15.48575 -15.13943 -14.89718 -14.71930 -14.53030 -14.39922 -14.27441 -13.63348 -13.51107 -13.17826 -13.06913 -13.03473 -12.75216 -12.62108 -12.34632 -12.11225 -12.04022 -11.71716 -11.61523 -11.39715 -11.08139 -10.59448 -10.13808 -9.93568 -9.16218 -8.74448 -7.88925 -5.35253 0.48276 1.46925 1.48272 1.57460 1.87111 2.04506 2.27777 2.38499 2.50200 3.26641 3.58994 3.69767 3.92707 3.99770 4.11952 4.33965 4.36016 4.43947 4.53820 4.57003 4.68605 4.69770 4.81936 4.86271 4.98389 5.06956 5.09104 5.13983 5.25075 5.29957 5.35316 5.46501 5.48347 5.61288 5.66631 5.77067 5.94242 6.35717 6.48513 6.64654 7.10490 7.16237 7.81217 8.34901 9.18335 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.003940 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.539278 B = 7105.222204 C = 7355.082772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.609 5.609 6 C -0.262 4.262 7 H 0.075 0.925 8 C -0.054 4.054 9 N -0.938 5.938 10 Si 0.970 3.030 11 H -0.286 1.286 12 H -0.298 1.298 13 H -0.264 1.264 14 C 0.182 3.818 15 C -0.132 4.132 16 C 0.170 3.830 17 H 0.056 0.944 18 N -0.705 5.705 19 C 0.582 3.418 20 O -0.581 6.581 21 C -0.080 4.080 22 C -0.129 4.129 23 C -0.230 4.230 24 C 0.048 3.952 25 N -0.526 5.526 26 H 0.431 0.569 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.067 0.933 32 H 0.249 0.751 33 H 0.057 0.943 34 H -0.011 1.011 35 H 0.062 0.938 36 H 0.044 0.956 37 H 0.408 0.592 38 H 0.131 0.869 39 H 0.162 0.838 40 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 12.611 14.021 23.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.119 4.119 3 H 0.101 0.899 4 C 0.023 3.977 5 N -0.332 5.332 6 C -0.392 4.392 7 H 0.093 0.907 8 C -0.249 4.249 9 N -0.585 5.585 10 Si 0.798 3.202 11 H -0.213 1.213 12 H -0.225 1.225 13 H -0.188 1.188 14 C 0.056 3.944 15 C -0.172 4.172 16 C 0.065 3.935 17 H 0.075 0.925 18 N -0.355 5.355 19 C 0.372 3.628 20 O -0.461 6.461 21 C -0.193 4.193 22 C -0.157 4.157 23 C -0.253 4.253 24 C -0.089 4.089 25 N -0.124 5.124 26 H 0.271 0.729 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.007 0.993 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.244 0.756 38 H 0.149 0.851 39 H 0.180 0.820 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.041 11.778 13.807 22.946 hybrid contribution 1.131 0.135 -0.922 1.465 sum -12.909 11.914 12.886 21.786 Atomic orbital electron populations 1.21717 0.92675 1.01877 1.02880 1.21767 0.96860 0.99936 0.93382 0.89923 1.21083 0.83497 0.96794 0.96322 1.44401 1.01130 1.71434 1.16255 1.19582 0.98638 1.12391 1.08607 0.90719 1.25871 1.01912 0.96038 1.01089 1.70212 1.21827 1.16508 1.49906 0.85222 0.78953 0.77538 0.78465 1.21251 1.22483 1.18814 1.20515 0.97746 0.92094 0.84091 1.22323 0.96006 1.00872 0.98006 1.20701 0.92533 0.96326 0.83947 0.92539 1.45823 1.65830 1.14506 1.09390 1.17505 0.77070 0.85757 0.82508 1.90828 1.52661 1.17654 1.84983 1.20126 1.16508 0.86680 0.96001 1.21522 1.02055 1.00236 0.91874 1.21213 1.09986 0.92781 1.01331 1.22766 1.01592 1.01652 0.82866 1.42023 1.49183 1.08733 1.12428 0.72944 0.93670 0.91108 0.90870 0.97326 0.91460 0.94166 0.92504 0.99298 0.91898 0.93682 0.75565 0.85111 0.82029 0.76638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.02 71.98 0.65 -2.43 16 2 C -0.10 -3.04 2.46 -10.72 -0.03 -3.06 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.15 6.02 5.79 86.36 0.50 6.52 16 5 N -0.61 -30.83 3.01 -698.39 -2.10 -32.93 16 6 C -0.26 -14.34 9.59 84.03 0.81 -13.54 16 7 H 0.08 3.89 7.89 -2.91 -0.02 3.86 16 8 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 9 N -0.94 -57.07 11.18 21.65 0.24 -56.83 16 10 Si 0.97 44.95 29.59 68.60 2.03 46.98 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 14 C 0.18 9.34 5.33 86.31 0.46 9.80 16 15 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 16 C 0.17 5.86 1.88 45.02 0.08 5.94 16 17 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 18 N -0.71 -18.83 4.36 -446.36 -1.95 -20.78 16 19 C 0.58 18.26 7.75 86.45 0.67 18.93 16 20 O -0.58 -24.18 16.55 -4.33 -0.07 -24.25 16 21 C -0.08 -1.95 7.06 40.35 0.28 -1.66 16 22 C -0.13 -3.14 10.65 22.57 0.24 -2.90 16 23 C -0.23 -3.76 10.81 22.01 0.24 -3.52 16 24 C 0.05 0.54 11.89 83.48 0.99 1.53 16 25 N -0.53 -7.40 5.99 -183.62 -1.10 -8.50 16 26 H 0.43 3.24 8.19 -92.71 -0.76 2.48 16 27 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.07 1.28 7.36 -2.39 -0.02 1.27 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 32 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.06 3.28 6.04 -2.38 -0.01 3.26 16 34 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 7.49 7.44 -92.71 -0.69 6.81 16 38 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 40 H 0.22 0.35 8.06 -2.91 -0.02 0.33 16 Total: -1.00 -76.01 326.70 2.15 -73.86 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -0.40 Total: 14.70 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.49 Total: 7.74 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -4.91 Total: -119.04 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -76.01 2.15 -73.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941808913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.071 kcal (2) G-P(sol) polarization free energy of solvation -76.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds