Wall clock time and date at job start Mon Mar 30 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52078 * 2 1 4 4 C 1.53192 * 109.50252 * 120.08858 * 2 1 3 5 5 N 1.46922 * 108.77681 * 174.58714 * 4 2 1 6 6 C 1.36936 * 120.63147 * 126.38745 * 5 4 2 7 7 H 1.07997 * 120.00481 * 207.68037 * 6 5 4 8 8 C 1.38817 * 119.99703 * 27.68907 * 6 5 4 9 9 N 1.31619 * 120.00022 * 17.34735 * 8 6 5 10 10 Si 1.86794 * 119.99665 * 197.35806 * 8 6 5 11 11 H 1.48501 * 109.47584 * 59.99354 * 10 8 6 12 12 H 1.48497 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47222 * 299.99253 * 10 8 6 14 14 C 1.46931 * 118.74125 * 306.39044 * 5 4 2 15 15 C 1.53194 * 108.77251 * 53.60669 * 14 5 4 16 16 C 1.53043 * 109.31689 * 305.36830 * 15 14 5 17 17 H 1.09001 * 109.45755 * 301.34461 * 16 15 14 18 18 N 1.46498 * 109.46141 * 181.38808 * 16 15 14 19 19 C 1.34776 * 120.00098 * 84.92952 * 18 16 15 20 20 O 1.21693 * 119.99779 * 0.02562 * 19 18 16 21 21 C 1.46677 * 119.99740 * 179.97438 * 19 18 16 22 22 C 1.37871 * 126.22950 * 179.69342 * 21 19 18 23 23 C 1.39834 * 107.08411 * 179.84692 * 22 21 19 24 24 C 1.35457 * 107.86225 * 0.41439 * 23 22 21 25 25 N 1.35529 * 108.87379 * 359.74409 * 24 23 22 26 26 H 0.96999 * 125.67723 * 179.97438 * 25 24 23 27 27 H 1.09012 * 109.46670 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46993 * 300.06925 * 1 2 3 29 29 H 1.08998 * 109.47793 * 60.07727 * 1 2 3 30 30 H 1.09003 * 109.58553 * 294.37569 * 4 2 1 31 31 H 1.09005 * 109.58713 * 54.79587 * 4 2 1 32 32 H 0.97003 * 119.99445 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.58289 * 293.82593 * 14 5 4 34 34 H 1.08998 * 109.58649 * 173.39428 * 14 5 4 35 35 H 1.08998 * 109.49883 * 185.41683 * 15 14 5 36 36 H 1.09003 * 109.49573 * 65.31831 * 15 14 5 37 37 H 0.97002 * 119.99720 * 264.92611 * 18 16 15 38 38 H 1.07993 * 126.46079 * 359.97438 * 22 21 19 39 39 H 1.08003 * 126.07407 * 180.15522 * 23 22 21 40 40 H 1.08004 * 125.56115 * 179.71399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7239 1.2494 5 7 3.5047 -0.8292 1.1694 6 6 4.2937 -0.3790 2.1940 7 1 5.2989 -0.0395 1.9925 8 6 3.8015 -0.3592 3.4918 9 7 2.7380 -1.0694 3.8032 10 14 4.6483 0.6756 4.7961 11 1 4.6316 2.1022 4.3842 12 1 3.9328 0.5257 6.0887 13 1 6.0537 0.2220 4.9524 14 6 4.1054 -1.4266 -0.0311 15 6 3.5708 -0.6948 -1.2662 16 6 2.0408 -0.7229 -1.2485 17 1 1.6967 -1.7571 -1.2356 18 7 1.5264 -0.0527 -2.4454 19 6 1.3984 -0.7378 -3.5989 20 8 1.7096 -1.9133 -3.6461 21 6 0.8829 -0.0669 -4.7970 22 6 0.7057 -0.6391 -6.0388 23 6 0.1930 0.3539 -6.8793 24 6 0.0775 1.4926 -6.1548 25 7 0.4934 1.2503 -4.8879 26 1 0.5137 1.8974 -4.1656 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 0.5126 -0.8906 30 1 1.7639 -0.1582 2.1389 31 1 1.6054 -1.7218 1.2978 32 1 2.3939 -1.0552 4.7101 33 1 3.8376 -2.4817 -0.0872 34 1 5.1897 -1.3244 0.0134 35 1 3.9333 -1.1893 -2.1674 36 1 3.9158 0.3391 -1.2542 37 1 1.2780 0.8842 -2.4076 38 1 0.9202 -1.6620 -6.3106 39 1 -0.0613 0.2353 -7.9223 40 1 -0.2862 2.4393 -6.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941808915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:36 Heat of formation + Delta-G solvation = 23.090875 kcal Electronic energy + Delta-G solvation = -21773.308876 eV Core-core repulsion = 18588.984581 eV Total energy + Delta-G solvation = -3184.324295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35656 -39.38196 -37.48959 -34.57607 -32.48231 -31.87619 -31.14564 -29.90342 -28.81189 -25.98356 -25.17230 -23.10489 -21.70368 -20.95194 -20.52575 -20.14142 -19.69924 -18.45324 -16.78026 -15.95241 -15.63743 -15.13726 -14.78536 -14.10275 -13.97096 -13.83217 -13.74341 -13.50633 -13.10108 -12.93798 -12.80392 -12.52959 -12.38288 -12.09995 -11.50792 -11.34336 -11.09691 -10.77820 -10.67247 -10.40373 -10.23473 -10.03517 -10.02001 -9.73613 -9.50556 -9.17335 -8.81273 -8.49097 -8.33163 -6.71422 -5.81877 -3.23740 1.42429 2.62240 2.93630 3.29608 3.36905 3.42333 3.43284 3.47187 4.47172 4.85282 4.85792 5.18463 5.19949 5.27860 5.34343 5.42724 5.54650 5.63277 5.84193 5.92164 6.01101 6.04148 6.10390 6.19731 6.30626 6.41548 6.46647 6.54134 6.57142 6.64991 6.75633 6.77603 6.91114 6.97345 7.18352 7.29802 7.57174 7.67746 7.77391 8.31550 8.41916 9.18206 9.81404 10.38364 11.26899 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.003841 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.209546 B = 7288.061294 C = 7446.582942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.066 0.934 4 C 0.181 3.819 5 N -0.593 5.593 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.903 3.097 11 H -0.284 1.284 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.147 3.853 15 C -0.140 4.140 16 C 0.157 3.843 17 H 0.084 0.916 18 N -0.722 5.722 19 C 0.583 3.417 20 O -0.530 6.530 21 C -0.049 4.049 22 C -0.113 4.113 23 C -0.213 4.213 24 C 0.016 3.984 25 N -0.540 5.540 26 H 0.416 0.584 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.092 0.908 31 H 0.021 0.979 32 H 0.255 0.745 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.388 0.612 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.782 7.001 -16.530 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 H 0.085 0.915 4 C 0.055 3.945 5 N -0.315 5.315 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.733 3.267 11 H -0.211 1.211 12 H -0.216 1.216 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.054 3.946 17 H 0.103 0.897 18 N -0.371 5.371 19 C 0.370 3.630 20 O -0.406 6.406 21 C -0.162 4.162 22 C -0.139 4.139 23 C -0.238 4.238 24 C -0.120 4.120 25 N -0.136 5.136 26 H 0.253 0.747 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.221 0.779 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.585 6.176 -16.195 18.541 hybrid contribution 0.220 1.410 0.956 1.718 sum -6.366 7.586 -15.239 18.174 Atomic orbital electron populations 1.21728 0.95905 1.01599 1.00430 1.22179 0.94662 1.00574 0.96916 0.91533 1.20803 0.83092 0.97115 0.93518 1.44097 1.01716 1.69387 1.16324 1.19157 0.97797 1.35572 0.85845 0.91652 1.25041 0.98560 0.99033 0.96961 1.70022 1.25620 1.40088 1.18930 0.86365 0.78989 0.80476 0.80913 1.21093 1.21624 1.20853 1.20885 0.96709 0.94344 0.86042 1.22400 0.94686 1.01318 0.99650 1.21107 0.93917 0.97280 0.82262 0.89743 1.46220 1.66268 1.13824 1.10766 1.17097 0.77972 0.86277 0.81653 1.90843 1.50472 1.15149 1.84159 1.20666 1.13544 0.84835 0.97191 1.21333 1.01715 0.99979 0.90907 1.20897 1.09454 0.93052 1.00351 1.22007 1.05144 1.00679 0.84175 1.42062 1.50171 1.10058 1.11355 0.74736 0.92858 0.92531 0.94171 0.88955 0.96051 0.93532 0.96061 0.92490 0.92527 0.92399 0.77916 0.83567 0.84049 0.81369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.03 37.16 0.34 -1.77 16 2 C -0.12 -2.18 2.46 -90.50 -0.22 -2.41 16 3 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 4 C 0.18 4.18 4.59 -3.71 -0.02 4.16 16 5 N -0.59 -14.70 2.99 -172.31 -0.52 -15.21 16 6 C -0.25 -6.89 9.59 -15.06 -0.14 -7.04 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 9 N -0.90 -25.79 11.19 55.49 0.62 -25.17 16 10 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.14 16 15 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 16 C 0.16 2.72 1.88 -67.89 -0.13 2.60 16 17 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 18 N -0.72 -10.13 4.36 -55.07 -0.24 -10.37 16 19 C 0.58 9.02 7.75 -12.85 -0.10 8.92 16 20 O -0.53 -10.26 16.54 5.19 0.09 -10.17 16 21 C -0.05 -0.62 7.06 -81.98 -0.58 -1.20 16 22 C -0.11 -1.38 10.65 -39.12 -0.42 -1.80 16 23 C -0.21 -2.03 10.81 -39.98 -0.43 -2.47 16 24 C 0.02 0.12 11.89 -16.91 -0.20 -0.08 16 25 N -0.54 -4.81 5.99 -9.39 -0.06 -4.87 16 26 H 0.42 2.57 8.19 -40.82 -0.33 2.24 16 27 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.04 0.51 7.36 -51.93 -0.38 0.13 16 30 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.39 4.29 7.44 -40.82 -0.30 3.99 16 38 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -32.11 326.66 -8.29 -40.41 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.92 Total: 4.78 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.16 Total: -0.67 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.19 Total: -55.62 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.11 -8.29 -40.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941808915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.498 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds