Wall clock time and date at job start Mon Mar 30 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52078 * 2 1 4 4 C 1.53192 * 109.50252 * 120.08858 * 2 1 3 5 5 N 1.46922 * 108.77681 * 174.58714 * 4 2 1 6 6 C 1.36936 * 120.63147 * 126.38745 * 5 4 2 7 7 H 1.07997 * 120.00481 * 207.68037 * 6 5 4 8 8 C 1.38817 * 119.99703 * 27.68907 * 6 5 4 9 9 N 1.31619 * 120.00022 * 17.34735 * 8 6 5 10 10 Si 1.86794 * 119.99665 * 197.35806 * 8 6 5 11 11 H 1.48501 * 109.47584 * 59.99354 * 10 8 6 12 12 H 1.48497 * 109.47225 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47222 * 299.99253 * 10 8 6 14 14 C 1.46931 * 118.74125 * 306.39044 * 5 4 2 15 15 C 1.53194 * 108.77251 * 53.60669 * 14 5 4 16 16 C 1.53043 * 109.31689 * 305.36830 * 15 14 5 17 17 H 1.09001 * 109.45755 * 301.34461 * 16 15 14 18 18 N 1.46498 * 109.46141 * 181.38808 * 16 15 14 19 19 C 1.34776 * 120.00098 * 84.92952 * 18 16 15 20 20 O 1.21693 * 119.99779 * 0.02562 * 19 18 16 21 21 C 1.46677 * 119.99740 * 179.97438 * 19 18 16 22 22 C 1.37871 * 126.22950 * 179.69342 * 21 19 18 23 23 C 1.39834 * 107.08411 * 179.84692 * 22 21 19 24 24 C 1.35457 * 107.86225 * 0.41439 * 23 22 21 25 25 N 1.35529 * 108.87379 * 359.74409 * 24 23 22 26 26 H 0.96999 * 125.67723 * 179.97438 * 25 24 23 27 27 H 1.09012 * 109.46670 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46993 * 300.06925 * 1 2 3 29 29 H 1.08998 * 109.47793 * 60.07727 * 1 2 3 30 30 H 1.09003 * 109.58553 * 294.37569 * 4 2 1 31 31 H 1.09005 * 109.58713 * 54.79587 * 4 2 1 32 32 H 0.97003 * 119.99445 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.58289 * 293.82593 * 14 5 4 34 34 H 1.08998 * 109.58649 * 173.39428 * 14 5 4 35 35 H 1.08998 * 109.49883 * 185.41683 * 15 14 5 36 36 H 1.09003 * 109.49573 * 65.31831 * 15 14 5 37 37 H 0.97002 * 119.99720 * 264.92611 * 18 16 15 38 38 H 1.07993 * 126.46079 * 359.97438 * 22 21 19 39 39 H 1.08003 * 126.07407 * 180.15522 * 23 22 21 40 40 H 1.08004 * 125.56115 * 179.71399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7239 1.2494 5 7 3.5047 -0.8292 1.1694 6 6 4.2937 -0.3790 2.1940 7 1 5.2989 -0.0395 1.9925 8 6 3.8015 -0.3592 3.4918 9 7 2.7380 -1.0694 3.8032 10 14 4.6483 0.6756 4.7961 11 1 4.6316 2.1022 4.3842 12 1 3.9328 0.5257 6.0887 13 1 6.0537 0.2220 4.9524 14 6 4.1054 -1.4266 -0.0311 15 6 3.5708 -0.6948 -1.2662 16 6 2.0408 -0.7229 -1.2485 17 1 1.6967 -1.7571 -1.2356 18 7 1.5264 -0.0527 -2.4454 19 6 1.3984 -0.7378 -3.5989 20 8 1.7096 -1.9133 -3.6461 21 6 0.8829 -0.0669 -4.7970 22 6 0.7057 -0.6391 -6.0388 23 6 0.1930 0.3539 -6.8793 24 6 0.0775 1.4926 -6.1548 25 7 0.4934 1.2503 -4.8879 26 1 0.5137 1.8974 -4.1656 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5149 0.8894 29 1 -0.3634 0.5126 -0.8906 30 1 1.7639 -0.1582 2.1389 31 1 1.6054 -1.7218 1.2978 32 1 2.3939 -1.0552 4.7101 33 1 3.8376 -2.4817 -0.0872 34 1 5.1897 -1.3244 0.0134 35 1 3.9333 -1.1893 -2.1674 36 1 3.9158 0.3391 -1.2542 37 1 1.2780 0.8842 -2.4076 38 1 0.9202 -1.6620 -6.3106 39 1 -0.0613 0.2353 -7.9223 40 1 -0.2862 2.4393 -6.5263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941808915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:36 Heat of formation + Delta-G solvation = 1.688425 kcal Electronic energy + Delta-G solvation = -21774.236956 eV Core-core repulsion = 18588.984581 eV Total energy + Delta-G solvation = -3185.252375 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20510 -40.67434 -39.01979 -36.21093 -34.08255 -33.54544 -32.01370 -31.39870 -29.94348 -27.58916 -26.90276 -24.55385 -23.00877 -22.55452 -21.37713 -21.31000 -20.89638 -19.72542 -18.68045 -17.30930 -16.80457 -16.63459 -16.22713 -15.59417 -15.48910 -15.15017 -14.87597 -14.71422 -14.53265 -14.41606 -14.24096 -13.57545 -13.52293 -13.23042 -13.13509 -12.93831 -12.89833 -12.56717 -12.46939 -12.08218 -11.87322 -11.79273 -11.62342 -11.35092 -11.08610 -10.56883 -10.13546 -9.93060 -9.15638 -8.73366 -7.89153 -5.34883 0.49002 1.48270 1.49586 1.57093 1.87657 2.05348 2.28173 2.39111 2.50856 3.25867 3.59947 3.71090 3.92027 4.01303 4.15747 4.30570 4.36208 4.44688 4.53602 4.54342 4.65547 4.68754 4.80847 4.90317 4.96018 5.04954 5.08704 5.14546 5.25702 5.30052 5.30927 5.46662 5.47352 5.63657 5.70138 5.78088 5.95278 6.36819 6.48704 6.64496 7.12572 7.15836 7.81742 8.34988 9.17629 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037116 B = 0.003841 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.209546 B = 7288.061294 C = 7446.582942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.076 0.924 4 C 0.188 3.812 5 N -0.609 5.609 6 C -0.268 4.268 7 H 0.068 0.932 8 C -0.048 4.048 9 N -0.934 5.934 10 Si 0.970 3.030 11 H -0.275 1.275 12 H -0.294 1.294 13 H -0.278 1.278 14 C 0.144 3.856 15 C -0.126 4.126 16 C 0.169 3.831 17 H 0.057 0.943 18 N -0.706 5.706 19 C 0.584 3.416 20 O -0.579 6.579 21 C -0.081 4.081 22 C -0.128 4.128 23 C -0.229 4.229 24 C 0.047 3.953 25 N -0.528 5.528 26 H 0.430 0.570 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.064 0.936 31 H -0.009 1.009 32 H 0.251 0.749 33 H 0.006 0.994 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.407 0.593 38 H 0.133 0.867 39 H 0.162 0.838 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.474 10.121 -18.323 22.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.095 0.905 4 C 0.062 3.938 5 N -0.333 5.333 6 C -0.398 4.398 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.580 5.580 10 Si 0.797 3.203 11 H -0.201 1.201 12 H -0.220 1.220 13 H -0.204 1.204 14 C 0.018 3.982 15 C -0.166 4.166 16 C 0.065 3.935 17 H 0.075 0.925 18 N -0.356 5.356 19 C 0.373 3.627 20 O -0.460 6.460 21 C -0.194 4.194 22 C -0.156 4.156 23 C -0.253 4.253 24 C -0.090 4.090 25 N -0.125 5.125 26 H 0.270 0.730 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.009 0.991 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.243 0.757 38 H 0.151 0.849 39 H 0.180 0.820 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.281 9.346 -18.001 21.550 hybrid contribution 0.425 0.411 1.409 1.528 sum -6.857 9.757 -16.592 20.433 Atomic orbital electron populations 1.21680 0.93572 1.01517 1.02250 1.21901 0.96491 0.99970 0.94362 0.90546 1.20610 0.82466 0.95642 0.95079 1.44363 1.02307 1.69828 1.16756 1.19497 0.98242 1.35317 0.86719 0.91463 1.25811 0.99437 1.00169 0.98914 1.70188 1.27167 1.41562 1.19055 0.85314 0.77874 0.79122 0.77953 1.20055 1.22017 1.20363 1.20965 0.96917 0.93864 0.86468 1.22197 0.95341 1.01241 0.97790 1.20693 0.93225 0.96171 0.83441 0.92510 1.45852 1.65869 1.14528 1.09377 1.17465 0.77063 0.85748 0.82397 1.90815 1.52753 1.17405 1.84982 1.20147 1.16497 0.86729 0.95977 1.21519 1.01991 1.00305 0.91735 1.21216 1.09806 0.92864 1.01403 1.22761 1.01640 1.01668 0.82944 1.42043 1.49215 1.08798 1.12418 0.73012 0.93954 0.92213 0.90783 0.91725 0.99095 0.93975 0.97580 0.92286 0.92264 0.91364 0.75685 0.84937 0.82022 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.03 71.98 0.65 -3.20 16 2 C -0.11 -3.75 2.46 -10.71 -0.03 -3.78 16 3 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.19 8.97 4.59 86.36 0.40 9.37 16 5 N -0.61 -30.94 2.99 -699.08 -2.09 -33.04 16 6 C -0.27 -14.72 9.59 84.03 0.81 -13.91 16 7 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 8 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 9 N -0.93 -54.91 11.19 21.65 0.24 -54.67 16 10 Si 0.97 44.24 29.59 68.60 2.03 46.27 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 14 C 0.14 6.36 6.52 86.36 0.56 6.92 16 15 C -0.13 -4.58 5.65 30.67 0.17 -4.41 16 16 C 0.17 5.84 1.88 45.02 0.08 5.92 16 17 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 18 N -0.71 -18.79 4.36 -446.37 -1.95 -20.73 16 19 C 0.58 17.77 7.75 86.45 0.67 18.44 16 20 O -0.58 -23.08 16.54 -4.33 -0.07 -23.15 16 21 C -0.08 -1.91 7.06 40.35 0.28 -1.62 16 22 C -0.13 -3.01 10.65 22.57 0.24 -2.77 16 23 C -0.23 -3.66 10.81 22.01 0.24 -3.43 16 24 C 0.05 0.52 11.89 83.48 0.99 1.51 16 25 N -0.53 -7.42 5.99 -183.62 -1.10 -8.52 16 26 H 0.43 3.42 8.19 -92.71 -0.76 2.66 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.65 7.36 -2.39 -0.02 1.64 16 30 H 0.06 3.44 6.04 -2.39 -0.01 3.42 16 31 H -0.01 -0.48 8.14 -2.38 -0.02 -0.49 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 34 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.41 7.76 7.44 -92.71 -0.69 7.08 16 38 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 39 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 40 H 0.22 0.39 8.06 -2.91 -0.02 0.37 16 Total: -1.00 -72.96 326.66 2.15 -70.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -0.40 Total: 16.22 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.49 Total: 6.81 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.90 Total: -116.96 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -72.96 2.15 -70.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941808915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.492 kcal (2) G-P(sol) polarization free energy of solvation -72.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds