Wall clock time and date at job start Mon Mar 30 2020 02:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49968 * 2 1 4 4 C 1.53196 * 109.49491 * 120.09275 * 2 1 3 5 5 N 1.46925 * 108.77721 * 174.58614 * 4 2 1 6 6 C 1.36931 * 120.63244 * 126.41623 * 5 4 2 7 7 H 1.07995 * 120.00265 * 207.67818 * 6 5 4 8 8 C 1.38813 * 119.99731 * 27.67457 * 6 5 4 9 9 N 1.31617 * 120.00373 * 17.35894 * 8 6 5 10 10 Si 1.86804 * 119.99841 * 197.35977 * 8 6 5 11 11 H 1.48493 * 109.47565 * 90.00014 * 10 8 6 12 12 H 1.48503 * 109.47215 * 210.00366 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00009 * 10 8 6 14 14 C 1.46928 * 118.73735 * 306.39576 * 5 4 2 15 15 C 1.53168 * 108.76836 * 53.60894 * 14 5 4 16 16 C 1.53039 * 109.32596 * 305.35085 * 15 14 5 17 17 H 1.08999 * 109.46142 * 181.38298 * 16 15 14 18 18 N 1.46495 * 109.46372 * 301.36099 * 16 15 14 19 19 C 1.34779 * 120.00187 * 275.02518 * 18 16 15 20 20 O 1.21692 * 119.99422 * 0.02562 * 19 18 16 21 21 C 1.46671 * 120.00091 * 179.97438 * 19 18 16 22 22 C 1.37876 * 126.23517 * 179.97438 * 21 19 18 23 23 C 1.39832 * 107.08734 * 180.02562 * 22 21 19 24 24 C 1.35448 * 107.86559 * 0.02562 * 23 22 21 25 25 N 1.35532 * 108.87179 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.67501 * 180.26826 * 25 24 23 27 27 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46964 * 300.07030 * 1 2 3 29 29 H 1.09002 * 109.46473 * 60.06522 * 1 2 3 30 30 H 1.08998 * 109.58793 * 294.37668 * 4 2 1 31 31 H 1.09000 * 109.58137 * 54.65689 * 4 2 1 32 32 H 0.96998 * 120.00104 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.58613 * 173.39359 * 14 5 4 34 34 H 1.08997 * 109.58933 * 293.67557 * 14 5 4 35 35 H 1.09001 * 109.47781 * 185.40554 * 15 14 5 36 36 H 1.08992 * 109.50119 * 65.31729 * 15 14 5 37 37 H 0.97005 * 120.00137 * 95.02591 * 18 16 15 38 38 H 1.07998 * 126.45203 * 0.03215 * 22 21 19 39 39 H 1.08005 * 126.06664 * 179.97438 * 23 22 21 40 40 H 1.08006 * 125.56371 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8295 1.1695 6 6 4.2935 -0.3800 2.1945 7 1 5.2987 -0.0405 1.9934 8 6 3.8010 -0.3606 3.4922 9 7 2.7374 -1.0707 3.8032 10 14 4.6479 0.6735 4.7972 11 1 4.0516 2.0333 4.8154 12 1 4.4687 0.0367 6.1267 13 1 6.0968 0.7725 4.4871 14 6 4.1053 -1.4267 -0.0309 15 6 3.5709 -0.6947 -1.2657 16 6 2.0409 -0.7228 -1.2485 17 1 1.6585 -0.2238 -2.1389 18 7 1.5784 -2.1127 -1.2313 19 6 1.4497 -2.7945 -2.3868 20 8 1.7182 -2.2555 -3.4443 21 6 0.9872 -4.1863 -2.3696 22 6 0.8096 -4.9997 -3.4685 23 6 0.3597 -6.2364 -2.9958 24 6 0.2717 -6.1585 -1.6465 25 7 0.6504 -4.9180 -1.2534 26 1 0.6826 -4.6000 -0.3375 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5149 0.8893 29 1 -0.3632 0.5128 -0.8906 30 1 1.7637 -0.1584 2.1389 31 1 1.6032 -1.7210 1.2989 32 1 2.3935 -1.0574 4.7101 33 1 5.1896 -1.3247 0.0136 34 1 3.8396 -2.4824 -0.0859 35 1 3.9337 -1.1892 -2.1668 36 1 3.9160 0.3391 -1.2535 37 1 1.3647 -2.5424 -0.3883 38 1 0.9851 -4.7321 -4.5000 39 1 0.1235 -7.1002 -3.5997 40 1 -0.0474 -6.9552 -0.9907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941808916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:40 Heat of formation + Delta-G solvation = 23.984548 kcal Electronic energy + Delta-G solvation = -22266.156956 eV Core-core repulsion = 19081.871413 eV Total energy + Delta-G solvation = -3184.285542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21172 -39.46175 -37.46141 -34.28711 -32.38370 -31.89301 -30.95409 -29.91906 -28.78623 -25.99200 -25.31656 -23.08679 -21.91231 -21.01153 -20.58849 -19.99535 -18.85972 -18.56373 -16.83815 -15.85525 -15.28203 -14.95292 -14.86211 -14.13520 -13.98658 -13.84575 -13.54412 -13.49255 -13.23964 -12.98002 -12.79533 -12.50123 -12.27264 -12.08519 -11.51239 -11.27518 -11.09264 -10.99406 -10.77010 -10.42008 -10.21104 -10.01694 -9.90325 -9.74679 -9.49001 -9.01918 -8.74578 -8.54727 -8.18677 -6.76899 -5.88728 -3.30205 1.57802 2.76894 3.12955 3.32490 3.40063 3.40904 3.45613 3.60407 4.42579 5.00706 5.03553 5.22966 5.25842 5.34287 5.37495 5.46690 5.52750 5.61727 5.80096 6.02409 6.06410 6.09966 6.13863 6.15755 6.28998 6.39734 6.48034 6.51272 6.58477 6.70845 6.74198 6.86212 6.91414 6.98017 7.19556 7.35986 7.49137 7.71898 7.81179 8.35432 8.43483 9.11973 9.75027 10.31247 11.19895 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.004891 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.783991 B = 5723.563966 C = 6084.195939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 H 0.080 0.920 4 C 0.179 3.821 5 N -0.592 5.592 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.905 5.905 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.075 0.925 18 N -0.711 5.711 19 C 0.585 3.415 20 O -0.540 6.540 21 C -0.049 4.049 22 C -0.115 4.115 23 C -0.215 4.215 24 C 0.018 3.982 25 N -0.537 5.537 26 H 0.419 0.581 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.011 0.989 32 H 0.254 0.746 33 H 0.053 0.947 34 H 0.015 0.985 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.396 0.604 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.435 -6.302 -8.580 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.149 4.149 3 H 0.098 0.902 4 C 0.053 3.947 5 N -0.314 5.314 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.550 5.550 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.022 3.978 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.094 0.906 18 N -0.362 5.362 19 C 0.372 3.628 20 O -0.418 6.418 21 C -0.162 4.162 22 C -0.141 4.141 23 C -0.240 4.240 24 C -0.118 4.118 25 N -0.133 5.133 26 H 0.256 0.744 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.232 0.768 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.260 -5.806 -8.999 12.405 hybrid contribution 0.279 0.299 1.649 1.699 sum -5.981 -5.507 -7.349 10.960 Atomic orbital electron populations 1.21717 0.95855 1.01065 1.00999 1.22150 0.94742 1.00898 0.97138 0.90185 1.20772 0.83244 0.96312 0.94385 1.44061 1.01566 1.69540 1.16219 1.19222 0.97773 1.35322 0.85787 0.91583 1.25006 0.98544 0.99032 0.96945 1.70004 1.25778 1.40323 1.18873 0.86280 0.79240 0.80167 0.81041 1.21409 1.21785 1.20416 1.20854 0.96614 0.93972 0.86408 1.22379 0.95008 1.01797 0.99416 1.20919 0.94379 0.80337 0.98676 0.90648 1.46069 1.67241 1.14645 1.08234 1.17076 0.77570 0.83796 0.84350 1.90798 1.51552 1.68811 1.30596 1.20614 1.14446 0.93896 0.87272 1.21278 1.02306 0.92791 0.97751 1.20862 1.10323 0.99017 0.93784 1.22019 1.05343 0.87848 0.96583 1.42132 1.50938 1.11449 1.08799 0.74384 0.93445 0.92547 0.93551 0.89029 0.97096 0.93642 0.92848 0.96732 0.92408 0.91288 0.76812 0.83720 0.84146 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.05 37.16 0.34 -1.76 16 2 C -0.13 -2.27 2.67 -90.50 -0.24 -2.51 16 3 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 4 C 0.18 3.87 4.29 -3.71 -0.02 3.85 16 5 N -0.59 -13.95 2.99 -172.34 -0.52 -14.47 16 6 C -0.25 -6.64 9.59 -15.06 -0.14 -6.78 16 7 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.91 -24.86 11.19 55.49 0.62 -24.24 16 10 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.15 3.05 6.25 -3.72 -0.02 3.03 16 15 C -0.15 -2.64 5.77 -26.62 -0.15 -2.80 16 16 C 0.16 2.76 2.21 -67.89 -0.15 2.61 16 17 H 0.08 1.32 7.58 -51.93 -0.39 0.92 16 18 N -0.71 -11.35 3.60 -55.08 -0.20 -11.55 16 19 C 0.59 9.77 7.75 -12.86 -0.10 9.67 16 20 O -0.54 -10.57 16.54 5.20 0.09 -10.48 16 21 C -0.05 -0.70 7.06 -81.98 -0.58 -1.28 16 22 C -0.11 -1.55 10.65 -39.12 -0.42 -1.97 16 23 C -0.22 -2.38 10.81 -39.98 -0.43 -2.82 16 24 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 25 N -0.54 -6.22 5.99 -9.39 -0.06 -6.28 16 26 H 0.42 4.21 8.19 -40.82 -0.33 3.88 16 27 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 31 H 0.01 0.24 6.65 -51.93 -0.35 -0.10 16 32 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 33 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 34 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.40 6.08 5.86 -40.82 -0.24 5.84 16 38 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 39 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 40 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 322.74 15.07 4.86 4.86 Total: -1.00 -30.27 322.74 -8.20 -38.47 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.76 Total: 8.43 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.21 Total: -0.79 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.15 Total: -56.54 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.27 -8.20 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941808916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.453 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds