Wall clock time and date at job start Mon Mar 30 2020 02:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.49968 * 2 1 4 4 C 1.53196 * 109.49491 * 120.09275 * 2 1 3 5 5 N 1.46925 * 108.77721 * 174.58614 * 4 2 1 6 6 C 1.36931 * 120.63244 * 126.41623 * 5 4 2 7 7 H 1.07995 * 120.00265 * 207.67818 * 6 5 4 8 8 C 1.38813 * 119.99731 * 27.67457 * 6 5 4 9 9 N 1.31617 * 120.00373 * 17.35894 * 8 6 5 10 10 Si 1.86804 * 119.99841 * 197.35977 * 8 6 5 11 11 H 1.48493 * 109.47565 * 90.00014 * 10 8 6 12 12 H 1.48503 * 109.47215 * 210.00366 * 10 8 6 13 13 H 1.48504 * 109.47189 * 330.00009 * 10 8 6 14 14 C 1.46928 * 118.73735 * 306.39576 * 5 4 2 15 15 C 1.53168 * 108.76836 * 53.60894 * 14 5 4 16 16 C 1.53039 * 109.32596 * 305.35085 * 15 14 5 17 17 H 1.08999 * 109.46142 * 181.38298 * 16 15 14 18 18 N 1.46495 * 109.46372 * 301.36099 * 16 15 14 19 19 C 1.34779 * 120.00187 * 275.02518 * 18 16 15 20 20 O 1.21692 * 119.99422 * 0.02562 * 19 18 16 21 21 C 1.46671 * 120.00091 * 179.97438 * 19 18 16 22 22 C 1.37876 * 126.23517 * 179.97438 * 21 19 18 23 23 C 1.39832 * 107.08734 * 180.02562 * 22 21 19 24 24 C 1.35448 * 107.86559 * 0.02562 * 23 22 21 25 25 N 1.35532 * 108.87179 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.67501 * 180.26826 * 25 24 23 27 27 H 1.09000 * 109.47077 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46964 * 300.07030 * 1 2 3 29 29 H 1.09002 * 109.46473 * 60.06522 * 1 2 3 30 30 H 1.08998 * 109.58793 * 294.37668 * 4 2 1 31 31 H 1.09000 * 109.58137 * 54.65689 * 4 2 1 32 32 H 0.96998 * 120.00104 * 179.97438 * 9 8 6 33 33 H 1.08998 * 109.58613 * 173.39359 * 14 5 4 34 34 H 1.08997 * 109.58933 * 293.67557 * 14 5 4 35 35 H 1.09001 * 109.47781 * 185.40554 * 15 14 5 36 36 H 1.08992 * 109.50119 * 65.31729 * 15 14 5 37 37 H 0.97005 * 120.00137 * 95.02591 * 18 16 15 38 38 H 1.07998 * 126.45203 * 0.03215 * 22 21 19 39 39 H 1.08005 * 126.06664 * 179.97438 * 23 22 21 40 40 H 1.08006 * 125.56371 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7241 1.2495 5 7 3.5046 -0.8295 1.1695 6 6 4.2935 -0.3800 2.1945 7 1 5.2987 -0.0405 1.9934 8 6 3.8010 -0.3606 3.4922 9 7 2.7374 -1.0707 3.8032 10 14 4.6479 0.6735 4.7972 11 1 4.0516 2.0333 4.8154 12 1 4.4687 0.0367 6.1267 13 1 6.0968 0.7725 4.4871 14 6 4.1053 -1.4267 -0.0309 15 6 3.5709 -0.6947 -1.2657 16 6 2.0409 -0.7228 -1.2485 17 1 1.6585 -0.2238 -2.1389 18 7 1.5784 -2.1127 -1.2313 19 6 1.4497 -2.7945 -2.3868 20 8 1.7182 -2.2555 -3.4443 21 6 0.9872 -4.1863 -2.3696 22 6 0.8096 -4.9997 -3.4685 23 6 0.3597 -6.2364 -2.9958 24 6 0.2717 -6.1585 -1.6465 25 7 0.6504 -4.9180 -1.2534 26 1 0.6826 -4.6000 -0.3375 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5149 0.8893 29 1 -0.3632 0.5128 -0.8906 30 1 1.7637 -0.1584 2.1389 31 1 1.6032 -1.7210 1.2989 32 1 2.3935 -1.0574 4.7101 33 1 5.1896 -1.3247 0.0136 34 1 3.8396 -2.4824 -0.0859 35 1 3.9337 -1.1892 -2.1668 36 1 3.9160 0.3391 -1.2535 37 1 1.3647 -2.5424 -0.3883 38 1 0.9851 -4.7321 -4.5000 39 1 0.1235 -7.1002 -3.5997 40 1 -0.0474 -6.9552 -0.9907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941808916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:39 Heat of formation + Delta-G solvation = 5.487723 kcal Electronic energy + Delta-G solvation = -22266.959038 eV Core-core repulsion = 19081.871413 eV Total energy + Delta-G solvation = -3185.087625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21418 -40.80731 -38.94977 -35.97431 -33.85255 -33.56591 -31.98480 -31.45665 -29.92290 -27.55810 -27.04018 -24.45267 -23.44166 -22.57028 -21.55284 -21.00639 -20.13123 -19.97066 -18.70351 -17.11605 -16.74535 -16.57796 -16.21528 -15.69365 -15.49385 -15.09709 -14.93328 -14.80135 -14.51068 -14.42033 -14.22626 -13.65489 -13.49344 -13.16435 -13.09010 -12.96368 -12.80887 -12.58722 -12.50801 -12.18878 -11.82466 -11.74343 -11.51627 -11.19973 -11.10895 -10.56163 -10.10247 -9.93439 -9.15335 -8.68990 -7.89490 -5.33112 0.50960 1.46542 1.49093 1.56344 1.88086 2.13577 2.28403 2.41607 2.50288 3.25590 3.63187 3.74774 3.95253 4.03063 4.15815 4.31269 4.33691 4.45776 4.53286 4.55268 4.62864 4.70783 4.81562 4.92705 4.99830 5.05878 5.10509 5.15172 5.25509 5.30074 5.31272 5.47637 5.54632 5.63793 5.72955 5.79210 5.97834 6.37922 6.46492 6.60194 7.14309 7.15228 7.83471 8.35076 9.16304 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.004891 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.783991 B = 5723.563966 C = 6084.195939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 H 0.073 0.927 4 C 0.188 3.812 5 N -0.606 5.606 6 C -0.265 4.265 7 H 0.061 0.939 8 C -0.041 4.041 9 N -0.928 5.928 10 Si 0.961 3.039 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.274 1.274 14 C 0.150 3.850 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.079 0.921 18 N -0.705 5.705 19 C 0.586 3.414 20 O -0.576 6.576 21 C -0.084 4.084 22 C -0.123 4.123 23 C -0.225 4.225 24 C 0.039 3.961 25 N -0.534 5.534 26 H 0.425 0.575 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.008 0.992 32 H 0.251 0.749 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.140 0.860 39 H 0.166 0.834 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.225 -7.299 -8.699 13.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 H 0.091 0.909 4 C 0.063 3.937 5 N -0.329 5.329 6 C -0.395 4.395 7 H 0.079 0.921 8 C -0.237 4.237 9 N -0.574 5.574 10 Si 0.790 3.210 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.199 1.199 14 C 0.025 3.975 15 C -0.175 4.175 16 C 0.062 3.938 17 H 0.097 0.903 18 N -0.356 5.356 19 C 0.375 3.625 20 O -0.456 6.456 21 C -0.197 4.197 22 C -0.151 4.151 23 C -0.248 4.248 24 C -0.097 4.097 25 N -0.130 5.130 26 H 0.263 0.737 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.158 0.842 39 H 0.183 0.817 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.051 -6.802 -9.119 13.384 hybrid contribution 0.524 0.499 1.661 1.812 sum -6.527 -6.303 -7.458 11.745 Atomic orbital electron populations 1.21656 0.93607 1.01807 1.01880 1.21955 0.96528 0.99880 0.95299 0.90852 1.20610 0.82361 0.95962 0.94815 1.44261 1.02267 1.69950 1.16414 1.19459 0.98031 1.35238 0.86785 0.92110 1.25632 0.99402 1.00092 0.98562 1.70121 1.26883 1.41401 1.18945 0.85364 0.78543 0.78574 0.78521 1.21270 1.22088 1.19856 1.20873 0.96289 0.93984 0.86382 1.22247 0.95788 1.01454 0.98038 1.20785 0.93573 0.81111 0.98315 0.90328 1.45952 1.67095 1.14122 1.08394 1.17364 0.76791 0.84613 0.83707 1.90766 1.53343 1.69871 1.31648 1.20324 1.17376 0.93297 0.88703 1.21506 1.02063 0.93937 0.97547 1.21209 1.10220 0.98818 0.94594 1.22755 1.02407 0.87620 0.96958 1.42171 1.50573 1.11768 1.08506 0.73668 0.92795 0.92450 0.91862 0.92311 0.97456 0.94006 0.93432 0.96931 0.92148 0.91160 0.76404 0.84229 0.81666 0.77315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 9.05 71.98 0.65 -3.15 16 2 C -0.12 -4.03 2.67 -10.71 -0.03 -4.06 16 3 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.19 8.17 4.29 86.36 0.37 8.54 16 5 N -0.61 -28.79 2.99 -699.15 -2.09 -30.88 16 6 C -0.26 -14.09 9.59 84.03 0.81 -13.29 16 7 H 0.06 3.23 7.89 -2.91 -0.02 3.20 16 8 C -0.04 -2.18 4.91 84.86 0.42 -1.76 16 9 N -0.93 -51.41 11.19 21.65 0.24 -51.16 16 10 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 C 0.15 6.21 6.25 86.35 0.54 6.75 16 15 C -0.14 -4.85 5.77 30.66 0.18 -4.68 16 16 C 0.17 5.60 2.21 45.02 0.10 5.70 16 17 H 0.08 2.66 7.58 -2.39 -0.02 2.65 16 18 N -0.71 -22.11 3.60 -446.39 -1.61 -23.71 16 19 C 0.59 19.38 7.75 86.44 0.67 20.05 16 20 O -0.58 -22.60 16.54 -4.32 -0.07 -22.67 16 21 C -0.08 -2.35 7.06 40.35 0.28 -2.07 16 22 C -0.12 -3.20 10.65 22.57 0.24 -2.96 16 23 C -0.22 -4.36 10.81 22.01 0.24 -4.12 16 24 C 0.04 0.66 11.89 83.48 0.99 1.65 16 25 N -0.53 -11.29 5.99 -183.62 -1.10 -12.39 16 26 H 0.42 7.78 8.19 -92.71 -0.76 7.02 16 27 H 0.05 1.48 7.53 -2.39 -0.02 1.46 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.96 6.04 -2.39 -0.01 2.95 16 31 H 0.01 0.33 6.65 -2.39 -0.02 0.31 16 32 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.05 1.98 7.93 -2.39 -0.02 1.97 16 34 H 0.01 0.53 7.74 -2.39 -0.02 0.51 16 35 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.40 12.01 5.86 -92.70 -0.54 11.46 16 38 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -65.04 322.74 2.61 -62.43 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.25 Total: 26.28 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 5.46 Total: 6.61 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -4.56 Total: -118.15 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.07 Total: -22.67 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -65.04 2.61 -62.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941808916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.915 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds