Wall clock time and date at job start Mon Mar 30 2020 02:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49189 * 2 1 4 4 C 1.53190 * 109.49679 * 120.09420 * 2 1 3 5 5 N 1.46928 * 108.77410 * 174.58830 * 4 2 1 6 6 C 1.36937 * 120.62701 * 126.37204 * 5 4 2 7 7 H 1.08001 * 120.00330 * 332.63205 * 6 5 4 8 8 C 1.38810 * 120.00106 * 152.63143 * 6 5 4 9 9 N 1.31618 * 120.00230 * 159.37034 * 8 6 5 10 10 Si 1.86808 * 119.99859 * 339.36773 * 8 6 5 11 11 H 1.48506 * 109.47032 * 92.92730 * 10 8 6 12 12 H 1.48495 * 109.47489 * 212.92814 * 10 8 6 13 13 H 1.48503 * 109.47095 * 332.93306 * 10 8 6 14 14 C 1.46922 * 118.73821 * 306.39232 * 5 4 2 15 15 C 1.53162 * 108.76889 * 53.61454 * 14 5 4 16 16 C 1.53033 * 109.49971 * 239.93747 * 2 1 3 17 17 H 1.09000 * 109.46343 * 58.67391 * 16 2 1 18 18 N 1.46503 * 109.46006 * 298.70284 * 16 2 1 19 19 C 1.34773 * 120.00568 * 154.97574 * 18 16 2 20 20 O 1.21634 * 119.99799 * 0.02562 * 19 18 16 21 21 C 1.47255 * 120.00670 * 179.97438 * 19 18 16 22 22 C 1.46688 * 126.94021 * 0.15446 * 21 19 18 23 23 C 1.34492 * 106.33509 * 180.23074 * 22 21 19 24 24 N 1.36443 * 108.85377 * 359.78106 * 23 22 21 25 25 H 0.96996 * 124.85317 * 179.97438 * 24 23 22 26 26 C 1.34659 * 110.29778 * 359.97438 * 24 23 22 27 27 H 1.09005 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47662 * 300.06221 * 1 2 3 29 29 H 1.09005 * 109.47089 * 60.07131 * 1 2 3 30 30 H 1.09000 * 109.59026 * 294.37894 * 4 2 1 31 31 H 1.08997 * 109.58892 * 54.80373 * 4 2 1 32 32 H 0.97001 * 119.99682 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.58070 * 173.39413 * 14 5 4 34 34 H 1.08997 * 109.58793 * 293.81491 * 14 5 4 35 35 H 1.08997 * 109.47756 * 185.40520 * 15 14 5 36 36 H 1.08994 * 109.50667 * 65.31158 * 15 14 5 37 37 H 0.97008 * 119.99890 * 334.97026 * 18 16 2 38 38 H 1.07998 * 126.83668 * 0.02562 * 22 21 19 39 39 H 1.08001 * 125.57091 * 179.74976 * 23 22 21 40 40 H 1.08004 * 125.79917 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2935 -0.3790 2.1941 7 1 3.9444 0.4176 2.8344 8 6 5.5419 -0.9462 2.4098 9 7 6.4550 -0.2878 3.0917 10 14 5.9260 -2.6442 1.7322 11 1 6.5609 -2.5121 0.3963 12 1 6.8542 -3.3467 2.6541 13 1 4.6681 -3.4235 1.6075 14 6 4.1053 -1.4266 -0.0311 15 6 3.5709 -0.6945 -1.2658 16 6 2.0408 -0.7226 -1.2485 17 1 1.6584 -0.2237 -2.1389 18 7 1.5784 -2.1127 -1.2314 19 6 1.4498 -2.7944 -2.3868 20 8 1.7182 -2.2558 -3.4439 21 6 0.9855 -4.1918 -2.3696 22 6 0.6203 -4.9849 -1.1910 23 6 0.2636 -6.1987 -1.6475 24 7 0.3766 -6.2090 -3.0072 25 1 0.1772 -6.9703 -3.5742 26 6 0.8044 -5.0113 -3.4495 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8893 29 1 -0.3633 0.5127 -0.8907 30 1 1.7637 -0.1585 2.1389 31 1 1.6053 -1.7219 1.2976 32 1 7.3275 -0.6841 3.2421 33 1 5.1896 -1.3244 0.0135 34 1 3.8377 -2.4817 -0.0873 35 1 3.9338 -1.1890 -2.1668 36 1 3.9159 0.3393 -1.2536 37 1 1.3648 -2.5424 -0.3884 38 1 0.6378 -4.6601 -0.1611 39 1 -0.0591 -7.0294 -1.0375 40 1 0.9800 -4.7447 -4.4813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942070922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:43 Heat of formation + Delta-G solvation = 31.172150 kcal Electronic energy + Delta-G solvation = -22313.021747 eV Core-core repulsion = 19129.047883 eV Total energy + Delta-G solvation = -3183.973865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16518 -39.55082 -37.51813 -34.30101 -32.55062 -31.57065 -31.14962 -29.94641 -29.15176 -26.30669 -25.24856 -23.14402 -21.69606 -21.45837 -20.76958 -19.54230 -18.85164 -18.67087 -16.74920 -16.03617 -15.47190 -14.99078 -14.88722 -14.33314 -14.06242 -13.93725 -13.61988 -13.51302 -13.34921 -13.17676 -13.09700 -12.44351 -12.20842 -12.11491 -11.68263 -11.52997 -11.43490 -11.17289 -10.58004 -10.46057 -10.16338 -9.89001 -9.63329 -9.57575 -9.43636 -8.96851 -8.68215 -8.53579 -8.36673 -6.92782 -5.92057 -3.27494 1.81623 2.35072 3.03734 3.37349 3.51406 3.54434 3.71809 3.80333 4.56656 4.82363 4.97484 5.01355 5.07614 5.24192 5.31657 5.37373 5.43501 5.51098 5.75072 5.80419 5.93504 5.97529 5.99222 6.05736 6.14003 6.25731 6.36909 6.46827 6.53457 6.61423 6.66061 6.73074 6.77308 6.78236 6.91558 7.06374 7.28561 7.96185 7.99696 8.35642 8.64970 8.97275 9.75600 10.13486 11.23902 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.006036 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.286309 B = 4638.097575 C = 5366.583966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 H 0.085 0.915 4 C 0.155 3.845 5 N -0.605 5.605 6 C -0.259 4.259 7 H 0.085 0.915 8 C 0.024 3.976 9 N -0.909 5.909 10 Si 0.883 3.117 11 H -0.290 1.290 12 H -0.305 1.305 13 H -0.271 1.271 14 C 0.129 3.871 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.078 0.922 18 N -0.710 5.710 19 C 0.588 3.412 20 O -0.562 6.562 21 C -0.229 4.229 22 C -0.168 4.168 23 C -0.021 4.021 24 N -0.556 5.556 25 H 0.416 0.584 26 C 0.069 3.931 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.262 0.738 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.760 -10.277 -10.491 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 H 0.104 0.896 4 C 0.029 3.971 5 N -0.328 5.328 6 C -0.387 4.387 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.552 5.552 10 Si 0.714 3.286 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.196 1.196 14 C 0.003 3.997 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.096 0.904 18 N -0.361 5.361 19 C 0.376 3.624 20 O -0.442 6.442 21 C -0.239 4.239 22 C -0.192 4.192 23 C -0.148 4.148 24 N -0.151 5.151 25 H 0.252 0.748 26 C -0.067 4.067 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.236 0.764 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -14.427 -9.980 -11.156 20.789 hybrid contribution 0.269 -1.586 -0.121 1.613 sum -14.158 -11.566 -11.277 21.480 Atomic orbital electron populations 1.21754 0.95458 1.01476 1.01233 1.21937 0.94872 1.00932 0.96286 0.89635 1.20931 0.84512 0.96490 0.95193 1.44356 1.00609 1.71979 1.15904 1.18912 0.97869 1.13904 1.08047 0.89705 1.25254 0.96410 0.98027 0.97747 1.69840 1.04405 1.37052 1.43893 0.86952 0.77654 0.87069 0.76956 1.21743 1.23321 1.19588 1.21274 0.97866 0.94658 0.85855 1.22382 0.94969 1.02112 0.99177 1.20859 0.94286 0.80938 0.98252 0.90394 1.45925 1.67363 1.13998 1.08770 1.17355 0.76680 0.84600 0.83728 1.90735 1.52358 1.70258 1.30856 1.20495 1.14519 0.95282 0.93626 1.22133 1.05480 0.93503 0.98086 1.21762 1.09677 1.00229 0.83151 1.41621 1.53190 1.12637 1.07664 0.74783 1.21806 1.00770 0.84756 0.99348 0.92955 0.92627 0.93162 0.91578 0.96425 0.92825 0.91185 0.95694 0.92245 0.90887 0.76438 0.83727 0.81473 0.80707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.05 37.16 0.34 -1.50 16 2 C -0.12 -1.92 2.67 -90.50 -0.24 -2.16 16 3 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.16 2.91 5.50 -3.71 -0.02 2.89 16 5 N -0.61 -14.15 2.77 -172.34 -0.48 -14.63 16 6 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 7 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 9 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 10 Si 0.88 22.82 24.35 -169.99 -4.14 18.69 16 11 H -0.29 -7.39 6.62 56.52 0.37 -7.02 16 12 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.27 -6.82 6.64 56.52 0.38 -6.45 16 14 C 0.13 2.90 3.94 -3.73 -0.01 2.88 16 15 C -0.15 -2.84 5.77 -26.62 -0.15 -2.99 16 16 C 0.16 2.73 2.21 -67.89 -0.15 2.58 16 17 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 18 N -0.71 -11.39 3.59 -54.89 -0.20 -11.59 16 19 C 0.59 9.85 7.77 -12.60 -0.10 9.76 16 20 O -0.56 -10.96 16.58 5.25 0.09 -10.88 16 21 C -0.23 -3.19 6.29 -103.36 -0.65 -3.84 16 22 C -0.17 -1.98 10.56 -37.50 -0.40 -2.37 16 23 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 24 N -0.56 -4.46 5.90 -12.85 -0.08 -4.54 16 25 H 0.42 1.76 8.96 -40.82 -0.37 1.40 16 26 C 0.07 0.77 11.69 -16.84 -0.20 0.57 16 27 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.07 1.75 4.49 -51.93 -0.23 1.52 16 34 H 0.03 0.57 6.67 -51.93 -0.35 0.22 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 6.05 5.85 -40.82 -0.24 5.81 16 38 H 0.15 1.59 7.70 -52.49 -0.40 1.18 16 39 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.18 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 316.69 15.07 4.77 4.77 Total: -1.00 -34.23 316.69 -6.98 -41.21 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.70 Total: 5.50 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -2.03 Total: -1.29 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.02 Total: -58.00 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.14 Total: 18.69 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.23 -6.98 -41.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942070922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.385 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds