Wall clock time and date at job start Mon Mar 30 2020 02:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.49189 * 2 1 4 4 C 1.53190 * 109.49679 * 120.09420 * 2 1 3 5 5 N 1.46928 * 108.77410 * 174.58830 * 4 2 1 6 6 C 1.36937 * 120.62701 * 126.37204 * 5 4 2 7 7 H 1.08001 * 120.00330 * 332.63205 * 6 5 4 8 8 C 1.38810 * 120.00106 * 152.63143 * 6 5 4 9 9 N 1.31618 * 120.00230 * 159.37034 * 8 6 5 10 10 Si 1.86808 * 119.99859 * 339.36773 * 8 6 5 11 11 H 1.48506 * 109.47032 * 92.92730 * 10 8 6 12 12 H 1.48495 * 109.47489 * 212.92814 * 10 8 6 13 13 H 1.48503 * 109.47095 * 332.93306 * 10 8 6 14 14 C 1.46922 * 118.73821 * 306.39232 * 5 4 2 15 15 C 1.53162 * 108.76889 * 53.61454 * 14 5 4 16 16 C 1.53033 * 109.49971 * 239.93747 * 2 1 3 17 17 H 1.09000 * 109.46343 * 58.67391 * 16 2 1 18 18 N 1.46503 * 109.46006 * 298.70284 * 16 2 1 19 19 C 1.34773 * 120.00568 * 154.97574 * 18 16 2 20 20 O 1.21634 * 119.99799 * 0.02562 * 19 18 16 21 21 C 1.47255 * 120.00670 * 179.97438 * 19 18 16 22 22 C 1.46688 * 126.94021 * 0.15446 * 21 19 18 23 23 C 1.34492 * 106.33509 * 180.23074 * 22 21 19 24 24 N 1.36443 * 108.85377 * 359.78106 * 23 22 21 25 25 H 0.96996 * 124.85317 * 179.97438 * 24 23 22 26 26 C 1.34659 * 110.29778 * 359.97438 * 24 23 22 27 27 H 1.09005 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47662 * 300.06221 * 1 2 3 29 29 H 1.09005 * 109.47089 * 60.07131 * 1 2 3 30 30 H 1.09000 * 109.59026 * 294.37894 * 4 2 1 31 31 H 1.08997 * 109.58892 * 54.80373 * 4 2 1 32 32 H 0.97001 * 119.99682 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.58070 * 173.39413 * 14 5 4 34 34 H 1.08997 * 109.58793 * 293.81491 * 14 5 4 35 35 H 1.08997 * 109.47756 * 185.40520 * 15 14 5 36 36 H 1.08994 * 109.50667 * 65.31158 * 15 14 5 37 37 H 0.97008 * 119.99890 * 334.97026 * 18 16 2 38 38 H 1.07998 * 126.83668 * 0.02562 * 22 21 19 39 39 H 1.08001 * 125.57091 * 179.74976 * 23 22 21 40 40 H 1.08004 * 125.79917 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0413 -0.7241 1.2494 5 7 3.5046 -0.8293 1.1694 6 6 4.2935 -0.3790 2.1941 7 1 3.9444 0.4176 2.8344 8 6 5.5419 -0.9462 2.4098 9 7 6.4550 -0.2878 3.0917 10 14 5.9260 -2.6442 1.7322 11 1 6.5609 -2.5121 0.3963 12 1 6.8542 -3.3467 2.6541 13 1 4.6681 -3.4235 1.6075 14 6 4.1053 -1.4266 -0.0311 15 6 3.5709 -0.6945 -1.2658 16 6 2.0408 -0.7226 -1.2485 17 1 1.6584 -0.2237 -2.1389 18 7 1.5784 -2.1127 -1.2314 19 6 1.4498 -2.7944 -2.3868 20 8 1.7182 -2.2558 -3.4439 21 6 0.9855 -4.1918 -2.3696 22 6 0.6203 -4.9849 -1.1910 23 6 0.2636 -6.1987 -1.6475 24 7 0.3766 -6.2090 -3.0072 25 1 0.1772 -6.9703 -3.5742 26 6 0.8044 -5.0113 -3.4495 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5148 0.8893 29 1 -0.3633 0.5127 -0.8907 30 1 1.7637 -0.1585 2.1389 31 1 1.6053 -1.7219 1.2976 32 1 7.3275 -0.6841 3.2421 33 1 5.1896 -1.3244 0.0135 34 1 3.8377 -2.4817 -0.0873 35 1 3.9338 -1.1890 -2.1668 36 1 3.9159 0.3393 -1.2536 37 1 1.3648 -2.5424 -0.3884 38 1 0.6378 -4.6601 -0.1611 39 1 -0.0591 -7.0294 -1.0375 40 1 0.9800 -4.7447 -4.4813 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942070922.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:42 Heat of formation + Delta-G solvation = 7.161874 kcal Electronic energy + Delta-G solvation = -22314.062911 eV Core-core repulsion = 19129.047883 eV Total energy + Delta-G solvation = -3185.015028 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.00791 -40.88713 -38.97623 -36.02902 -33.99696 -33.36982 -32.45262 -31.24375 -29.98157 -27.77076 -27.01940 -24.44566 -23.34136 -23.02161 -21.55046 -20.63964 -20.15462 -19.64715 -18.73148 -17.40479 -16.98898 -16.58820 -16.27058 -15.86965 -15.27675 -15.16177 -15.06008 -14.79390 -14.54516 -14.50617 -14.19540 -13.87509 -13.81748 -13.44865 -13.16755 -12.98259 -12.88028 -12.79363 -12.24613 -12.08745 -11.90533 -11.64965 -11.41273 -11.25512 -10.89291 -10.70545 -10.03533 -9.68093 -9.26016 -8.90626 -8.16182 -5.46821 0.83587 1.30138 1.38661 1.47871 1.57991 2.23326 2.41590 2.63156 2.67262 3.04658 3.34972 3.73948 3.96284 4.06714 4.10875 4.21158 4.24751 4.41535 4.43870 4.54938 4.58730 4.60735 4.76787 4.90538 4.94271 4.95908 5.01130 5.04695 5.16335 5.18921 5.25145 5.31263 5.49932 5.67158 5.78498 5.87617 5.98410 6.14178 6.66451 6.77485 6.91818 7.40731 7.63058 8.04488 9.03601 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.006036 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.286309 B = 4638.097575 C = 5366.583966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 H 0.077 0.923 4 C 0.151 3.849 5 N -0.615 5.615 6 C -0.243 4.243 7 H 0.058 0.942 8 C -0.031 4.031 9 N -0.956 5.956 10 Si 0.941 3.059 11 H -0.288 1.288 12 H -0.310 1.310 13 H -0.257 1.257 14 C 0.132 3.868 15 C -0.139 4.139 16 C 0.168 3.832 17 H 0.080 0.920 18 N -0.705 5.705 19 C 0.584 3.416 20 O -0.598 6.598 21 C -0.271 4.271 22 C -0.195 4.195 23 C -0.002 4.002 24 N -0.537 5.537 25 H 0.437 0.563 26 C 0.075 3.925 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.405 0.595 38 H 0.147 0.853 39 H 0.205 0.795 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.158 -12.665 -11.583 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.129 4.129 3 H 0.095 0.905 4 C 0.026 3.974 5 N -0.339 5.339 6 C -0.373 4.373 7 H 0.076 0.924 8 C -0.226 4.226 9 N -0.602 5.602 10 Si 0.771 3.229 11 H -0.216 1.216 12 H -0.239 1.239 13 H -0.182 1.182 14 C 0.007 3.993 15 C -0.180 4.180 16 C 0.063 3.937 17 H 0.098 0.902 18 N -0.356 5.356 19 C 0.375 3.625 20 O -0.482 6.482 21 C -0.281 4.281 22 C -0.218 4.218 23 C -0.130 4.130 24 N -0.133 5.133 25 H 0.277 0.723 26 C -0.063 4.063 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.242 0.758 38 H 0.164 0.836 39 H 0.222 0.778 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -16.889 -12.416 -12.267 24.288 hybrid contribution 0.935 -0.838 0.186 1.269 sum -15.954 -13.254 -12.082 24.003 Atomic orbital electron populations 1.21681 0.92520 1.02414 1.02407 1.21796 0.97149 0.99749 0.94169 0.90500 1.21153 0.81706 0.97943 0.96591 1.44447 1.02350 1.71968 1.15185 1.18897 0.97998 1.12466 1.07921 0.92389 1.25815 0.96646 1.01068 0.99077 1.69958 1.04964 1.38578 1.46721 0.85998 0.77708 0.83105 0.76083 1.21595 1.23938 1.18168 1.21190 0.96310 0.95157 0.86689 1.22282 0.97024 1.01228 0.97419 1.20716 0.92322 0.81939 0.98751 0.90235 1.45842 1.67199 1.13480 1.09080 1.17828 0.75883 0.85690 0.83095 1.90702 1.54170 1.71332 1.31955 1.20470 1.17409 0.94449 0.95762 1.22283 1.07209 0.94522 0.97830 1.22294 1.07140 1.00126 0.83465 1.41648 1.51388 1.12358 1.07865 0.72317 1.21972 0.99684 0.85319 0.99329 0.92128 0.91298 0.92194 0.91765 0.94309 0.93062 0.93965 0.95276 0.92508 0.91412 0.75827 0.83557 0.77817 0.79706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.05 71.98 0.65 -2.42 16 2 C -0.11 -3.29 2.67 -10.72 -0.03 -3.32 16 3 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.15 5.44 5.50 86.36 0.48 5.92 16 5 N -0.62 -28.54 2.77 -699.17 -1.94 -30.48 16 6 C -0.24 -13.71 10.03 84.03 0.84 -12.86 16 7 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 8 C -0.03 -1.85 5.23 84.86 0.44 -1.40 16 9 N -0.96 -60.63 13.97 21.65 0.30 -60.33 16 10 Si 0.94 47.80 24.35 68.60 1.67 49.47 16 11 H -0.29 -14.44 6.62 99.48 0.66 -13.78 16 12 H -0.31 -15.92 7.11 99.48 0.71 -15.22 16 13 H -0.26 -12.34 6.64 99.48 0.66 -11.68 16 14 C 0.13 5.86 3.94 86.35 0.34 6.20 16 15 C -0.14 -5.37 5.77 30.66 0.18 -5.19 16 16 C 0.17 5.49 2.21 45.02 0.10 5.59 16 17 H 0.08 2.64 7.58 -2.39 -0.02 2.63 16 18 N -0.71 -21.61 3.59 -445.83 -1.60 -23.21 16 19 C 0.58 18.97 7.77 86.61 0.67 19.65 16 20 O -0.60 -23.09 16.58 -4.14 -0.07 -23.15 16 21 C -0.27 -7.05 6.29 -19.04 -0.12 -7.17 16 22 C -0.19 -4.07 10.56 23.62 0.25 -3.82 16 23 C 0.00 -0.03 11.89 83.12 0.99 0.96 16 24 N -0.54 -6.57 5.90 -194.55 -1.15 -7.71 16 25 H 0.44 1.82 8.96 -92.71 -0.83 0.99 16 26 C 0.08 1.48 11.69 83.91 0.98 2.46 16 27 H 0.06 1.32 7.54 -2.38 -0.02 1.30 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 31 H 0.04 1.27 6.64 -2.39 -0.02 1.26 16 32 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 33 H 0.04 2.12 4.49 -2.39 -0.01 2.11 16 34 H 0.03 1.28 6.67 -2.39 -0.02 1.27 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.40 11.46 5.85 -92.70 -0.54 10.91 16 38 H 0.15 2.87 7.70 -2.91 -0.02 2.85 16 39 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -75.55 316.69 2.59 -72.96 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.41 Total: 17.85 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 5.77 Total: 4.60 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -4.38 Total: -121.73 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.07 Total: -23.15 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.67 Total: 49.47 kcal Total: -75.55 2.59 -72.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942070922.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.124 kcal (2) G-P(sol) polarization free energy of solvation -75.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds